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geo12/100

Transcription activated by AP2-Z in early zygote plays an essential role in Plasmodium ookinete development

GEO Series GSE198072. Plasmodium berghei. 10 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenAug 2022View details →
geo12/100

Tuft cells play a suppressive role in pancreatic injury and tumorigenesis

GEO Series GSE116536. Mus musculus. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.

openGEO-OpenJul 2018View details →
geo12/100

Rpb9 plays a critical role in global co-transcriptional splicing (Time-course GRO-seq)

GEO Series GSE221839. Homo sapiens. 10 samples. Type: Other.

openGEO-OpenDec 2023View details →
geo12/100

Senataxin, the helicase mutated in AOA2 and ALS4, plays a role in autophagy regulation

GEO Series GSE145677. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Expression profiling by array.

openGEO-OpenFeb 2020View details →
geo12/100

Cancer associated fibroblasts play an important role in prostate cancer progression [ATAC-Seq]

GEO Series GSE213665. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenJun 2023View details →
geo12/100

Cancer associated fibroblasts play an important role in prostate cancer progression [ChIP-Seq]

GEO Series GSE213664. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenJun 2023View details →
geo12/100

Senataxin, the helicase mutated in AOA2 and ALS4, plays a role in autophagy regulation [HTS]

GEO Series GSE145675. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenFeb 2020View details →
geo12/100

Intronic Circular RNA hsa_circ_0092339 Plays as Molecular Sponge in Castration-resistance Prostate Cancer by hsa-mir-940/C-MYC Axis

GEO Series GSE185910. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJan 2023View details →
geo12/100

The transcription factor EGR2 plays an important role in the expansion and function TCRα + CD4 - CD8 - double negative T cells in lpr lupus mice

GEO Series GSE306407. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2025View details →
geo12/100

SMAD4 plays acritical role in CD8 T cell cytotoxic function [ChIP-seq]

GEO Series GSE192620. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenJul 2022View details →
zenodo12/100

Time series from "Telescope: An Automatic Feature Extraction and Transformation Approach for Time Series Forecasting on a Level-Playing Field"

<p>Time Series used in the evaluation of &quot;Telescope: An Automatic Feature Extraction and Transformation Approach for Time Series Forecasting on a Level-Playing Field&quot;</p>

restrictedJan 2020View details →
zenodo12/100

Fastball pitching performance only slightly decreases after mobility impediment of the pelvis and trunk – Do (catch-up) compensation strategies come into play? (Dataset)

<p>Kinematic data (position data) of&nbsp;eleven baseball pitchers who&nbsp;performed&nbsp;25 fastballs recorded with a VICON motion capture system. The pickle-files (version 4.0) contain the position data of a static anatomical reference posture (&#39;STATIC&#39;) and a fastball pitch motion (&#39;PITCH&#39;)&nbsp;the landmarks attached to our subjects according to the&nbsp;modified plug-in-gait model<sup>1</sup>. The anatomical landmarks of the static posture and pitch motion are organised in Python dictionaries containing pandas DataFrames (version 1.1.0) with the X, Y and Z coordinates.</p> <p>For more information about the&nbsp;data read the original paper<sup>2</sup>&nbsp;and/or send an&nbsp;e-mail to corresponding author of the article:&nbsp;a.j.r.leenen@vu.nl.</p> <p><strong>References</strong><br> 1.&nbsp;Vicon R&copy;. Plug-in-Gait Modelling Instructions (2010)<br> 2.&nbsp;Leenen A, Trigt B van, Hoozemans M, Veeger H. Fastball pitching performance only slightly decreases after mobility impediment of the pelvis and trunk&mdash;Do (catch-up) compensation strategies come into play? Sports Act Living (2022) doi:&nbsp;10.3389/fspor.2022.1044616</p>

restrictedAug 2022View details →
zenodo12/100

Dataset related to Article "A SINGLE-GROUP STUDY ON THE EFFECT OF ONABOTULINUMTOXINA IN PATIENTS WITH CHRONIC MIGRAINE ASSOCIATED TO MEDICATION OVERUSE HEADACHE: PAIN CATASTROPHIZING PLAYS A ROLE"_ submitted

<p>THIS DATASET INCLUDES INFORMATION ON HEADACHE FREQUENCY, MEDICATION INTAKE, MIDAS SCORE, AVERAGE PAIN, HIT-6, ASC-12 AND PCS REFERRED TO PATIENTS RECEIVING ONABOTULINUMTOXINA AS PROPHYLAXIS FOR CM-MOH OVER 12 MONTHS.</p>

restrictedDec 2022View details →
zenodo12/100

The density of crown-like structures in epicardial adipose tissue could play a role in cardiovascular diseases

<p>Malavazos AE, Di Vincenzo A, Iacobellis G, Basilico S, Dubini C, Morricone L, Menicanti L, Luca T, Giordano A, Castorina S, Carruba M, Nisoli E, Del Prato S, Cinti S. The density of crown-like structures in epicardial adipose tissue could play a role in cardiovascular diseases. Eat Weight Disord. 2022 Oct;27(7):2905-2910. doi: 10.1007/s40519-022-01420-8. Epub 2022 Jun 9. PMID: 35678980.</p> <p><strong>Abstract</strong></p> <p><strong>Purpose:&nbsp;</strong>The visceral fat of patients affected by abdominal obesity is inflamed, and the main histopathologic feature is the high density of crown-like structures (CLS). Epicardial adipose tissue (EAT) is a visceral fat of paramount importance for its relationships with coronary vessels and myocardium. Its inflammation in patients with abdominal obesity could be of clinical relevance, but histopathological studies on CLS density in EAT are lacking. This study aimed to assess the histopathology of EAT biopsies obtained from patients undergoing open-heart surgery.</p> <p><strong>Methods:&nbsp;</strong>We collected EAT biopsies from 10 patients undergoing open-heart surgery for elective coronary artery bypass grafting (CABG) (n = 5) or valvular replacement (VR) (n = 5). Biopsies were treated for light microscopy and immunohistochemistry. We quantify the CLS density in each EAT sample.</p> <p><strong>Results:&nbsp;</strong>Despite all patients having abdominal obesity, in EAT samples, no CLS were detected in the VR group; in contrast, CLS were detected in the CABG group (about 17 CLS/10<sup>4</sup>&nbsp;adipocytes vs. 0.0 CLS/10<sup>4</sup>&nbsp;adipocytes, CABG vs. VR group, respectively). An impressive density of CLS (100 times that of other patients) was found in one patient (LS) in the CABG group that had a relevant anamnestic aspect: relatively rapid increase of weight gain, especially in abdominal adipose tissue, coincident with myocardial infarction.</p> <p><strong>Conclusions:&nbsp;</strong>CLS density could be an important predictive tool for cardiovascular diseases. Furthermore, the LS case implies a role for timing in weight gain.</p> <p><strong>Level of evidence:&nbsp;</strong>No level of evidence; this is a basic science study.</p>

restrictedJan 2023View details →
zenodo12/100

Can I Play It? (CIPI) Dataset

<h2>Can I Play It? (CIPI) dataset from <em>Combining piano performance dimensions for score difficulty classification</em></h2> <h3>Description</h3> <h4>Overview</h4> <p>Predicting the difficulty of playing a musical score plays a pivotal role in structuring and exploring score collections, with significant implications for music education. The automatic difficulty classification of piano scores, however, remains an unsolved challenge. This is largely due to the scarcity of annotated data and the inherent subjectiveness in the annotation process. The "Can I Play It?" (CIPI) dataset represents a substantial step forward in this domain, providing a machine-readable collection of piano scores paired with difficulty annotations from the esteemed Henle Verlag.</p> <h4>Dataset Creation</h4> <p>The CIPI dataset is meticulously assembled by aligning public domain scores with their corresponding difficulty labels sourced from Henle Verlag. This initial pairing was subsequently reviewed and refined by an expert pianist to ensure accuracy and reliability. The dataset is structured to facilitate easy access and interpretation, making it a valuable resource for researchers and educators alike.</p> <h4>Contributions and Findings</h4> <p>Our work makes two primary contributions to the field of score difficulty classification. Firstly, we address the critical issue of data scarcity, introducing the CIPI dataset to the academic community. Secondly, we delve into various input representations derived from score information, utilizing pre-trained machine learning models tailored for piano fingering and expressiveness. These models draw inspiration from musicological definitions of performance, offering nuanced insights into score difficulty.</p> <p>Through extensive experimentation, we demonstrate that an ensemble approach&mdash;combining outputs from multiple classifiers&mdash;yields superior results compared to individual classifiers. This highlights the diverse facets of difficulty captured by different representations. Our comprehensive experiments lay a robust foundation for future endeavors in score difficulty classification, and our best-performing model reports a balanced accuracy of 39.5% and a median square error of 1.1 across the nine difficulty levels introduced in this study.</p> <h4>Access and Usage</h4> <p>The CIPI dataset, along with the associated code and models, is made publicly available to ensure reproducibility and to encourage further research in this domain. Users are encouraged to reference this resource in their work and to contribute to its ongoing development.</p> <h3>Citation</h3> <blockquote> <p>Ramoneda, P., Jeong, D., Eremenko, V., Tamer, N. C., Miron, M., &amp; Serra, X. (2024). Combining Piano Performance Dimensions for Score Difficulty Classification. <em>Expert Systems with Applications</em>, 238, 121776. <a href="https://doi.org/10.1016/j.eswa.2023.121776">DOI: 10.1016/j.eswa.2023.121776</a></p> </blockquote> <p><code>@article{Ramoneda2024,</code><br><code>&nbsp; author &nbsp; &nbsp;= {Pedro Ramoneda and Dasaem Jeong and Vsevolod Eremenko and Nazif Can Tamer and Marius Miron and Xavier Serra},</code><br><code>&nbsp; title &nbsp; &nbsp; = {Combining Piano Performance Dimensions for Score Difficulty Classification},</code><br><code>&nbsp; journal &nbsp; = {Expert Systems with Applications},</code><br><code>&nbsp; volume &nbsp; &nbsp;= {238},</code><br><code>&nbsp; pages &nbsp; &nbsp; = {121776},</code><br><code>&nbsp; year &nbsp; &nbsp; &nbsp;= {2024},</code><br><code>&nbsp; doi &nbsp; &nbsp; &nbsp; = {10.1016/j.eswa.2023.121776},</code><br><code>&nbsp; url &nbsp; &nbsp; &nbsp; = {https://doi.org/10.1016/j.eswa.2023.121776}</code><br><code>}</code></p> <h3>Contact</h3> <p>pedro.ramoneda@upf.edu</p> <p>xavier.serra@upf.edu</p>

restrictedMay 2022View details →
geo12/100

A flucytosine-responsive APSES protein, Mbs1, plays pleiotropic roles in stress response, differentiation, and virulence of Cryptococcus neoformans

GEO Series GSE30156. Cryptococcus deneoformans JEC21; Cryptococcus neoformans H99. 9 samples. Type: Expression profiling by array.

openGEO-OpenJun 2011View details →
geo12/100

MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated Zebrafish brain tissue

GEO Series GSE32092. Danio rerio. 4 samples. Type: Expression profiling by array.

openGEO-OpenOct 2011View details →
geo12/100

miR-223 Plays A Critical Role in Obesogen-Enhanced Adipogenesis in Mesenchymal Stem Cells and Transgenerational Obesity

GEO Series GSE216429. Mus musculus. 50 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenOct 2022View details →
geo12/100

ß-catenin Plays a Dual Role in the Generation and Maintenance of Immortalized Hematopoietic Stem Cells

GEO Series GSE6424. Mus musculus. 4 samples. Type: Expression profiling by array.

openGEO-OpenDec 2006View details →
geo12/100

Mig-6 plays a critical role in the regulation of cholesterol homeostasis and bile acid synthesis.

GEO Series GSE31752. Mus musculus. 6 samples. Type: Expression profiling by array.

openGEO-OpenAug 2011View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record