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933
datasets available to search
ShareScore release 0.9.0
Dataset results
933 results for “shRNA”
Effect of lentiviral-based shRNA-mediated knockdown of ZFX on the human medulloblastoma (MB) cell-line DAOY
GEO Series GSE45265. Homo sapiens. 4 samples. Type: Expression profiling by array.
Genome-wide shRNA screen to identify cellular regulators of the maintenance of HIV-1 latency
GEO Series GSE59758. Homo sapiens. 2 samples. Type: Expression profiling by array.
EZH2 reads DNA 6mA to regulate survival and drug resistance of human head and neck squamous carcinoma by suppressing RIOX2-CDKN1A-NRF2 signaling axis [MeDIP-ChIP-seq-shRNA]
GEO Series GSE212437. Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
ACC-MESO1 cells: Control shRNA vs USP22 shRNA
GEO Series GSE104929. Homo sapiens. 1 samples. Type: Expression profiling by array.
Expression of FRY-targeting shRNA in MCF10A cells
GEO Series GSE35928. Homo sapiens. 6 samples. Type: Expression profiling by array.
Treatment of human AML cell lines MOLM-14 and THP-1 with MUC1 specific shRNA
GEO Series GSE99510. Homo sapiens. 12 samples. Type: Non-coding RNA profiling by array.
Table A1: RNA-seq Data for shRNA PRLR vs shRNA NTC for 3 samples each in PEO-1.
<p><strong>Table A1: RNA-seq Data for shRNA PRLR vs shRNA NTC for 3 samples each in PEO-1.</strong></p> <p>Excel Workbooks for RNA seq analysis showing the differential expression results for shRNA PRLR vs shRNA NTC for 3 samples each in PEO-1.</p> <p>Samples F01_4 to F01_6 represent shRNA NTC PEO-1 and F01_7 to F01_9 represent shRNA PRLR PEO-1.</p> <p>Sheet 1: statistically significant up-regulated genes with log2fold change of >= 1 (sorted by fold change).</p> <p>Sheet 2: statistically significant down-regulated genes with log2fold change of <= -1 (sorted by fold change)</p> <p>Sheet 3: Statistically significant differentially expressed (DE) genes (p value =< 0.05 and p adj =< 0.05) including normalised counts for each sample (rounded values)</p> <p>Sheet 4: Differential expression analysis results (raw) including normalised counts for each sample.</p> <p>Sheet 5: Raw counts for the six samples (three replicates PEO-1 shRNA NTC and three replicates PEO-1 shRNA PRLR</p> <p>Sheet 6: Filtered normalised counts (all genes with row Sum less than one were removed)</p> <p>The data presented log2 fold change, lfcSE = standard error of the log2 Fold Change estimate, stat = Wald statistic and fold change are included</p>
Table A2: RNA-seq Data for shRNA PRLR vs shRNA NTC for 2 samples each in PEO-1.
<p><strong>Table A2: RNA-seq Data for shRNA PRLR vs shRNA NTC for 2 samples each in PEO-1.</strong></p> <p>A) Excel Workbooks for RNA seq analysis showing the differential expression results for shRNA PRLR vs shRNA NTC for 2 samples each in PEO-1.</p> <p>Samples F01_5 and F01_6 represent shRNA NTC PEO-1 and F01_7 to F01_8 represent shRNA PRLR PEO-1.</p> <p> </p> <p>Sheet 1: statistically significant up-regulated genes with log2fold change of >= 1 (sorted by fold change).</p> <p>Sheet 2: statistically significant down-regulated genes with log2fold change of <= -1 (sorted by fold change)</p> <p>Sheet 3: Statistically significant differentially expressed (DE) genes (p value =< 0.05 and p adj =< 0.05) including normalised counts for each sample (rounded values)</p> <p>Sheet 4: Differential expression analysis results (raw) including normalised counts for each sample.</p> <p>Sheet 5: Raw counts for the six samples (three replicates PEO-1 shRNA NTC and three replicates PEO-1 shRNA PRLR</p> <p>Sheet 6: Filtered normalised counts (all genes with row Sum less than one were removed)</p> <p>The data presented log2 fold change, lfcSE = standard error of the log2 Fold Change estimate, stat = Wald statistic and fold change are included.</p> <p> </p> <p>B) List of genes in the top up-regulated and down-regulated hallmark pathways, which were affected by PRLR knockdown in PEO-1 cells.</p> <p>Sheet 1: list of all (raw) hallmark pathways affected by knocking down PRLR generated by set enrichment analysis (GSEA) in R using the Bioconductor package fgsea.</p> <p>Sheet 2: list of significantly affected pathways with (p value =< 0.05 and p adj =< 0.05)</p> <p>Sheet 3: list of gene in Myc targets V1 pathway</p> <p>Sheet 4: list of gene in Myc targets V2 pathway</p> <p>Sheet 5: list of gene in epithelial mesenchymal transition pathway</p> <p>Sheet 6: list of gene in glycolysis pathway</p> <p>Sheet 7: list of gene in oxidative phosphorylation pathway.</p> <p>The data presented NES= normalised enrichment score, NE= enrichment score, n More Extreme= number of times a random gene set had a more extreme enrichment score value, log2 fold change, lfcSE = standard error of the log2 Fold Change estimate, stat = Wald statistic , fold change, p value, and read count are included.</p>
Whole genome pooled shRNA screen to characterize Raptinal-induced apoptosis in the MIA PaCa-2 cell line
GEO Series GSE66423. Homo sapiens. 3 samples. Type: Non-coding RNA profiling by array.
m1A enrichment analysis of SNU-668 Erastin-resistant cells transfected with shRNA-ALKBH3 or control shRNA
GEO Series GSE317886. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Differential Gene Expression in MDA-MB231 from transduction of cells with shRNA targeting CDK19 and CDK8
GEO Series GSE103851. Homo sapiens. 9 samples. Type: Expression profiling by array.
Expression analysis of the effect of overexpression of Cebpb shRNA in mouse 4T1 mammary tumor cells
GEO Series GSE40825. Mus musculus. 10 samples. Type: Expression profiling by array.
PHF19 shRNA or scrambled control shRNA
GEO Series GSE254528. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.