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2,078 results for “soil data”

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dryad32/100

Data from: Differential impacts of nitrogen addition on rhizosphere and bulk-soil carbon sequestration in an alpine shrubland

<p><span><span>1. Due to complex root-soil interactions, the responses of carbon (C) dynamics in the rhizosphere to elevated nitrogen (N) deposition may be different from those in bulk soil. However, the potentially different response of C dynamics in the rhizosphere and bulk soils and their contributions to soil C sequestration under N deposition is still not elucidated.</span></span></p> <p><span><span>2. We conducted an N addition experiment in an alpine shrubland dominated by <i>Sibiraea angustata</i> located on the eastern Qinghai-Tibet Plateau (QTP). We measured the soil organic C (SOC) contents and density fractions in the rhizosphere and bulk soils in the top 15 cm of mineral soil and then employed a numerical model based on the rhizosphere extent to evaluate how the rhizosphere modulates soil C sequestration under N addition. We also measured the microbial gene abundance and C-acquisition enzyme activities to assess microbial community responses to N addition.</span></span></p> <p><span><span>3. The results showed that nitrogen addition had opposite effects on the rhizosphere and bulk-soil C stocks. Specifically, N addition decreased the rhizosphere SOC content through increasing bacterial abundance, β-glucosidase activity, and thus accelerating the loss of free light fraction C (FLF-C). However, N addition increased the bulk-soil C content, which was corresponding with the reduced oxidase activities and the accelerated accumulation of heavy fraction C (HF-C) under N addition. Numerical model analysis showed that the decrease induced by N addition in rhizosphere SOC stock ranged from 0.11 to 3.01 kg C m<sup>-2</sup> as root exudation diffusion distance extended from 0.5 mm to 2 mm, while the corresponding increase in the bulk-soil C stock ranged from 1.91 to 4.08 kg C m<sup>-2</sup>. By synthesizing the dynamics of the SOC stocks in these two soil compartments under N addition, the SOC stock at the ecosystem level exhibited an increase in range of 0.73-2.44 kg C m<sup>-2</sup>.</span></span></p> <p><span><span>4. <i>Synthesis</i> Our results suggest that alpine shrublands on the eastern QTP have great potential for soil C sequestration under N deposition, and the magnitude of the sequestration would depend closely on the responses of rhizosphere microbial C processes and the rhizosphere extent. Our results highlight the importance of integrating rhizosphere processes into land surface models to accurately predict ecosystem functions in the background of elevated N deposition.</span></span></p>

opencc-zeroJul 2020View details →
dryad32/100

Data from: Multiple scales of spatial heterogeneity control soil respiration responses to precipitation across a dryland rainfall gradient

<p><i>Aims –</i> Soil respiration (R<sub>s</sub>) is a major pathway for releasing fixed carbon back to the atmosphere. However, controls over R<sub>s</sub> are poorly understood in arid and hyper-arid systems where microbial activity is frequently constrained by moisture. We addressed key uncertainties in R<sub>s</sub>: 1) How do short-term rainfall pulses affect R<sub>s</sub> at sites that differ in long-term precipitation inputs?, 2) how do R<sub>s</sub> responses to short and long-term rainfall differ across soil surfaces?, and 3) how are R<sub>s</sub> responses affected by local-scale attributes?</p> <p><i>Methods – </i>We measured R<sub>s</sub> responses to rainfall pulses over a 48 h period. Working across a climate gradient, we compared R<sub>s </sub>responses on two contrasting soil surfaces which both had two vegetation/soil morphology patch types that differed in organic matter inputs and accumulation.</p> <p><i>Results – </i>Rates of R<sub>s </sub>were low, but highly responsive to rainfall pulses. Stimulation of R<sub>s </sub>by rainfall was generally greater in areas with higher annual rainfall. However, patterns for R<sub>s </sub>responses to rainfall differed greatly on the two soil surfaces and among patch types.</p> <p><i>Conclusions – </i>The strong role of patch type and soil surface in controlling R<sub>s</sub> points to the need to carefully consider small-scale spatial and temporal variation when interpreting dryland biogeochemical fluxes.</p>

opencc-zeroJun 2020View details →
dryad32/100

Data from: Decomposition of leaf litter mixtures across biomes: The role of litter identity, diversity and soil fauna

<p class="CxSpFirst">1. At broad spatial scales, the factors regulating litter decomposition remain ambiguous, with the understanding of these factors largely based on studies investigating site-specific single litter species, whereas studies using multi litter species mixtures across sites are rare.</p> <p class="CxSpMiddle">2. We exposed in microcosms containing single species and all possible mixtures of four leaf litter species differing widely in initial chemical and physical characteristics from a temperate forest to the climatic conditions of four different forests across the northern hemisphere for one year.</p> <p class="CxSpMiddle">3. Calcium, magnesium and condensed tannins predicted litter mass loss of single litter species and mixtures across forest types and biomes, regardless of species richness and microarthropod presence. However, relative mixture effects differed among forest types and varied with the access to the litter by microarthropods. Access to the microcosms by microarthropods modified the decomposition of individual litter species within mixtures, which differed among forest types independent of litter species richness and composition of litter mixtures. However, soil microarthropods generally only little affected litter decomposition.</p> <p>4. <i>Synthesis</i>. We conclude that litter identity is the dominant driver of decomposition across different forest types and the non-additive litter mixture effects vary among biomes despite identical leaf litter chemistry. These results suggest that across large spatial scales the environmental context of decomposing litter mixtures, including microarthropod communities, determine the decomposition of litter mixtures besides strong litter trait based effects.</p>

opencc-zeroDec 2019View details →
dryad32/100

Data from: Foraging by an avian ecosystem engineer extensively modifies the litter and soil layer in forest ecosystems

<p>Ecosystem engineers physically modify their environment, thereby altering habitats for other organisms. Increasingly, 'engineers' are recognised as an important focus for conservation and ecological restoration because their actions affect a range of ecosystem processes and thereby influence how ecosystems function. The superb lyrebird Menura novaehollandiae is proposed as an ecosystem engineer in forests of south-eastern Australia due to the volume of soil and litter it turns over when foraging. We measured the seasonal and spatial patterns of foraging by lyrebirds and the amount of soil displaced in forests in the Central Highlands, Victoria. We tested the effects of foraging on litter, soil nutrients and soil physical properties by using an experimental approach with three treatments: lyrebird exclusion, lyrebird exclusion with simulated foraging, and non-exclusion reference plots. Treatments were replicated in three forest types in each of three forest blocks. Lyrebirds foraged extensively in all forest types in all seasons. On average, lyrebirds displaced 155.7 t/ha of litter and soil in a 12-month period. Greater displacement occurred where vegetation complexity (&lt;50 cm height) was low. After two years of lyrebird exclusion, soil compaction (top 7.5 cm) increased by 37% in exclusion plots compared with baseline measures, whilst in unfenced plots it decreased by 22%. Litter depth was almost three times greater in fenced than unfenced plots. Soil moisture, pH and soil nutrients showed no difference between treatments. The enormous extent of litter and soil turned over by the superb lyrebird is unparalleled by any other vertebrate soil engineer in terrestrial ecosystems globally. The profound influence of such foraging activity on forest ecosystems is magnified by its year-round pattern and widespread distribution. The disturbance regime that lyrebirds impose has implications for diverse ecosystem processes including decomposition and nutrient cycling, the composition of litter- and soil-dwelling invertebrate communities, the shaping of ground-layer vegetation patterns, and fire behavior and post-fire ecosystem recovery. Maintaining lyrebird populations as a key facilitator of ecosystem function is now timely and critical as unprecedented wildfires in eastern Australia in summer 2019/2020 have severely burned ~12 million ha of forest, including ~30% of the geographic range of the superb lyrebird.</p>

opencc-zeroJul 2020View details →
dryad32/100

Data from: Soil microbial biomass increases along elevational gradients in the tropics and sub-tropics but not elsewhere

Abstract Aim: Our aim is to use elevational gradients to quantify the relationship between temperature and ecosystem functioning. Ecosystem functions such as decomposition, nutrient cycling and carbon storage are linked with the amount of microbial biomass in the soil. Previous studies have shown variable relationships between elevation and soil microbial biomass (SMB). Understanding the biological mechanisms linking SMB with elevational gradients will shed light on the environmental impacts of global warming. Location: Global. Time period: 2002-2018. Major taxa studied: Soil microbes. Method: We performed a global meta-analysis of the relationships between SMB and elevation. Data were collected from 59 studies of 73 elevational transects from around the world. Results: We found no consistent global relationship between SMB and elevation. SMB increased significantly with elevation in the tropics and sub-tropics, but not in other climate zones. However, we found consistent positive relationships between SMB, soil organic carbon and total nitrogen concentrations. Main conclusions: Our results suggest that global warming will impact tropical and sub-tropical ecosystems more severely than colder regions. Tropical ecosystems, already at risk from species extinctions, will likely experience declines in SMB as the climate warms, resulting in losses of fundamental ecosystem functions such as nutrient cycling and carbon storage.

opencc-zeroSep 2020View details →
dryad32/100

Data from: Effects of soil particles and convective transport on dispersion and aggregation of nanoplastics via small-angle neutron scattering (SANS) and ultra SANS (USANS)

Terrestrial nanoplastics (NPs) pose a serious threat to agricultural food production systems due to the potential harm of soil-born micro- and macroorganisms that promote soil fertility and ability of NPs to adsorb onto and penetrate into vegetables and other crops. Very little is known about the dispersion, fate and transport of NPs in soils. This is because of the challenges of analyzing terrestrial NPs by conventional microscopic techniques due to the low concentrations of NPs and absence of optical transparency in these systems. Herein, we investigate the potential utility of small-angle neutron scattering (SANS) and Ultra SANS (USANS) to probe the agglomeration behavior of NPs prepared from polybutyrate adipate terephthalate, a prominent biodegradable plastic used in agricultural mulching, in the presence of vermiculite, an artificial soil. SANS with the contrast matching technique was used to study the aggregation of NPs co-dispersed with vermiculite in aqueous media. We determined the contrast match point for vermiculite was 66% D 2 O / 33% H 2 O. At this condition, the signal for vermiculite was ~50-100%-fold lower that obtained using neat H 2 O or D 2 O as solvent. According to SANS and USANS, smaller-sized NPs (50 nm) remained dispersed in water and did not undergo size reduction or self-agglomeration, nor form agglomerates with vermiculite. Larger-sized NPs (300-1000 nm) formed self-agglomerates and agglomerates with vermiculite, demonstrating their significant adhesion with soil. However, employment of convective transport (simulated by ex situ stirring of the slurries prior to SANS and USANS analyses) reduced the self-agglomeration, demonstrating weak NP-NP interactions. Convective transport also led to size reduction of the larger-sized NPs. Therefore, this study demonstrates the potential utility of SANS and USANS with contrast matching technique for investigating behavior of terrestrial NPs in complex soil systems.

opencc-zeroAug 2020View details →
dryad32/100

Data from: Agroforestry coffee soils increase the insect-suppressive potential offered by entomopathogenic fungi over full-sun soils: a case proposing a "bait-survival technique"

Entomopathogenic fungi are important natural enemies of insects. However, there is little information on the insect-suppressive potential of these fungi and possible effects of farming management on this. Meanwhile, changes in natural landscapes due to agricultural intensification have caused considerable biodiversity loss and consequent decay of ecosystem services. However, the adoption of practices such as agroforestry in agroecosystems can foster abiotic and biotic conditions that conserve biodiversity, consequently restoring the provision of ecosystems services. Here, we assessed the effect of management systems (agroforestry or full-sun) on the pest-suppressive potential of entomopathogenic fungi in Brazilian coffee plantations. We used the insect-bait method coupled with survival analyses to assess the speed of kill by entomopathogenic fungi and their presence in soil samples from both farming systems. We found that insects exposed to agroforestry soils died more quickly than insects exposed to full-sun soils. Of the fungi isolated from the insect-baits, Metarhizium was found most frequently, followed by Beauveria. Meanwhile, Fusarium was frequently isolated as primary or secondary infections. We propose that the differential survival of insects is indicative of a greater suppressive potential by entomopathogenic fungi in agroforestry, and that this could be promoted by the diversified landscape, microclimatic stability and reduced soil disturbance in agroforestry systems. Furthermore, our results provide a useful demonstration of the potential use of the insect bait method to investigate pest suppressive potential through insect-bait mortality, and we term this the "bait survival technique".

opencc-zeroAug 2020View details →
dryad32/100

Data from: Climate and soil nutrients differentially drive multidimensional fine root traits in ectomycorrhizal‐dominated alpine coniferous forests

<ol> <li><span><span>Fine root traits vary greatly with environmental changes, but the understanding of root-trait variation and its drivers is limited over broad geographical scales, especially for ectomycorrhizal (ECM)-dominated conifers in alpine forests. Herein, the covariation patterns of and environmental controls for fine root traits among ECM-dominated conifers were examined to test whether and how climate and soil nutrients differentially affect fine root trait variations.</span></span></li> <li><span><span>Eight traits of first- and second-order roots were measured, i.e., root diameter (RD), specific root length (SRL), branching intensity (BRI), root tissue density (RTD), mycorrhizal colonization rate (MCR), and concentrations of carbon (C), nitrogen (N) and phosphorus (P), across 76 alpine coniferous populations on the eastern Tibetan Plateau, China.</span></span></li> <li><span><span>Our results showed that variations of the fine root traits fell into two major dimensions: the first dimension (32.39% of the total variance) was mainly represented by RD and SRL, potentially conveying a tradeoff between root lifespan and efficiency of resource foraging; the second dimension (23.70% of the variance) represented coordinated variation for root nutrients (i.e., N and P) and RTD, which depicts the conservation-acquisition tradeoff in resource uptake, i.e., root economic spectrum (RES). Variations in RD and SRL were mainly driven by climatic variables, characterized by a significant increase in RD and a decrease in SRL with increasing mean annual precipitation. In contrast, variations in fine root nutrients (i.e., N and P) and RTD were primarily driven by soil fertility, showing a significant increase in root N and P concentrations but a decrease in RTD with increasing soil resource levels.</span></span></li> <li><span><span><i>Synthesis. </i>Our study clearly shows two distinct dimensions of the variation of fine root traits in ECM-dominated alpine coniferous forests, providing further evidence of the inherent multidimensionality of root traits. Moreover, our findings highlight different roles of climatic and soil variables in driving the variation of fine root traits, potentially leading to the multidimensionality of root traits. This study provides new insights for understanding and predicting shifts in plant belowground strategies in climate-sensitive alpine forests worldwide.</span></span></li> </ol>

opencc-zeroApr 2020View details →
dryad32/100

Data from: Dynamics of deep soil carbon - insights from 14C time series across a climatic gradient

Quantitative constraints on soil organic matter (SOM) dynamics are essential for comprehensive understanding of the terrestrial carbon cycle. Deep soil carbon is of particular interest, as it represents large stocks and its turnover times remain highly uncertain. In this study, SOM dynamics in both the top and deep soil across a climatic (average temperature ~1-9 °C) gradient are determined using time-series (~20 years) 14C data from bulk soil and water-extractable organic carbon (WEOC). Analytical measurements reveal enrichment of bomb-derived radiocarbon in the deep soil layers on the bulk level during the last two decades. The WEOC pool is strongly enriched in bomb-derived carbon, indicating that it is a dynamic pool. Turnover time estimates of both the bulk and WEOC pool show that the latter cycles up to a magnitude faster than the former. The presence of bomb-derived carbon in the deep soil, as well as the rapidly turning WEOC pool across the climatic gradient implies that there likely is a dynamic component of carbon in the deep soil. Precipitation and bedrock type appear to exert a stronger influence on soil C turnover time and stocks as compared to temperature.

opencc-zeroAug 2020View details →
dryad32/100

Data from: Microplastics negatively affect soil fauna but stimulate microbial activity: insights from a field-based microplastic addition experiment

<p>Microplastics are recognized as an emerging contaminant worldwide. Although microplastics have been shown to strongly affect organisms in aquatic environments, less is known about whether and how microplastics can affect different taxa within a soil community, and it is unclear whether these effects can cascade through soil food webs. By conducting a microplastic manipulation experiment, i.e. adding low-density polyethylene fragments in the field, we found that microplastic addition significantly affected the composition and abundance of microarthropod and nematode communities. Contrary to soil fauna, we found only small effects of microplastics on the biomass and structure of soil microbial communities. Nevertheless, structural equation modeling revealed that the effects of microplastics strongly cascade through the soil food webs, leading to the modification of microbial functioning with further potential consequences on soil carbon and nutrient cycling. Our results highlight that taking into account the effects of microplastics at different trophic levels is important to elucidate the mechanisms underlying the ecological impacts of microplastic pollution on soil functioning.</p>

opencc-zeroAug 2020View details →
dryad32/100

Data from: Developing extruded seed pellets to overcome soil hydrophobicity and seedling emergence barriers

<p>Globally soil water repellency is a major constraint to plant establishment, restricting water infiltration and moisture retention in the seed zone, resulting in poor germination and seedling emergence.</p> <p>To address this problem within an ecosystem restoration context, we investigated the use of a surfactant in extruded seed pellets to improve native plant recruitment in water repellent topsoils of two proteaceous woodland species, <i>Banksia menziesii </i>R.Br (glasshouse trial) and <i>Lambertia inermis </i>R.Br (field trial). In this two-part study, we first examined <i>B. menziesii </i>seedling performance in detail under glasshouse conditions for differences in survival between the extruded pelleting formulations after an induced drought at 12 weeks.</p> <p>We demonstrated that there was no difference in seedling emergence, amongst control seed and pellet treatments in <i>B. menziesii</i>. Initially <i>B. menziesii </i>seedlings emerged faster in the control treatment (non-pelleted control seeds) and had greater initial plant growth (leaf and root production), however by week 12, seedlings generated from pellets were not significantly different from the control seeds, and pellets + surfactant had the greatest number of leaf establishment.</p> <p>Survival after drought of <i>B. menziesii </i>seedlings ranged from 14 to 31 days with pellet + surfactant surviving approximately 2.6 days (11.8%) longer than the control seeds. For the second species, <i>L. inermis</i>,<i> </i>seedling emergence under field conditions was approximately 24% greater in seedlings derived from extruded pellets, however there was no difference in overall survival due to post-emergence predation.</p> <p>This study provides a proof of concept that seedling emergence in water repellent soils can be enhanced with extruded pellets containing surfactants. Our demonstration under <i>in situ</i> and <i>ex situ</i> conditions confirms the prospective use of seed enhancement technologies with future development and field-testing warranted.</p>

opencc-zeroAug 2020View details →
zenodo32/100

Data and R code used in Delory et al (2020) Soil chemical legacies trigger species-specific and context-dependent root responses in later arriving plants

<p>This repository contains the data and R markdown files supporting the findings presented in Delory et al (2020) Soil chemical legacies trigger species-specific and context-dependent root responses in later arriving plants.</p>

opengpl-3.0-or-laterAug 2020View details →
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Data from: Above-belowground linkages of functionally dissimilar plant communities and soil properties in a grassland experiment

<p>Changes in plant community composition can have long-lasting consequences for ecosystem functioning. However, how the duration of plant growth of functionally distinct grassland plant communities influences abiotic and biotic soil properties and thus ecosystem functions is poorly known. In a field experiment, we established identical experimental subplots in two successive years comprising of fast- or slow-growing grass and forb community mixtures with different forb:grass ratios. After one and two years of plant growth, we measured above- and belowground biomass, soil abiotic characteristics (pH, organic matter, soil nutrients), soil microbial properties (respiration, biomass, community composition), and nematode abundance. Fast- and slow-growing plant communities did not differ in above- and belowground biomass. However, fast-and slow-growing plant communities created distinct soil bacterial communities, whereas soil fungal communities differed most in 100% forb communities compared to other forb:grass ratio mixtures. Moreover, soil nitrate availability was higher after two years of plant growth, whereas the opposite was true for soil ammonium concentrations. Furthermore, total nematodes and especially bacterial-feeding nematodes were more abundant after two years of plant growth. Our results show that plant community composition is a driving factor in soil microbial community assembly and that the duration of plant growth plays a crucial role in the establishment of plant community and functional group composition effects on abiotic and biotic soil ecosystem functioning under natural field conditions.</p>

opencc-zeroAug 2020View details →
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Data from: Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities

<p><b>Background</b>: Insect-associated microorganisms can provide a wide range of benefits to their host, but insect dependency on these microbes varies greatly. The origin and functionality of insect microbiomes is not well understood. Many caterpillars can harbor symbionts in their gut that impact host metabolism, nutrient uptake and pathogen protection. Despite our lack of knowledge on the ecological factors driving microbiome assemblages of wild caterpillars, they seem to be highly variable and influenced by diet and environment. Several recent studies have shown that shoot-feeding caterpillars acquire part of their microbiome from the soil. Here, we examine microbiomes of a monophagous caterpillar (<i>Tyria jacobaeae</i>) collected from its natural host plant (<i>Jacobaeae vulgaris</i>) growing in three different environments: coastal dunes, natural inland grasslands and riverine grasslands, and compare the bacterial communities of the wild caterpillars to those of soil samples collected from underneath each of the host plants from which the caterpillars were collected.</p> <p><b>Results</b>: The microbiomes of the caterpillars were dominated by Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes. Only 5% of the total bacterial diversity represented 86.2% of the total caterpillar's microbiome. Interestingly, we found a high consistency of dominant bacteria within the family Burkholderiaceae in all caterpillar samples across the three habitats. There was one amplicon sequence variant belonging to the genus <i>Ralstonia</i> that represented on average 53% of total community composition across all caterpillars. On average, one quarter of the caterpillar microbiome was shared with the soil.</p> <p><b>Conclusions</b>: We found that the monophagous caterpillars collected from fields located more than 100 kilometers apart were all dominated by a single <i>Ralstonia</i>. The remainder of the bacterial communities that were present resembled the local microbial communities in the soil in which the host plant was growing. Our findings provide an example of a caterpillar that has just a few key associated bacteria, but that also contains a community of low abundant bacteria characteristic of soil communities.</p>

opencc-zeroAug 2020View details →
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Data from: Soil functional responses to drought under range-expanding and native plant communities

1. Current climate warming enables plant species and soil organisms to expand their range to higher latitudes and altitudes. At the same time, climate change increases the incidence of extreme weather events such as drought. While it is expected that plants and soil organisms originating from the south are better able to cope with drought, little is known about the consequences of their range shifts on soil functioning under drought events. 2. Here, we test how range-expanding plant species and soil communities may influence soil functioning under drought. We performed a full-factorial outdoor mesocosm experiment with plant communities of range expanders or related natives, with soil inocula from the novel or the original range, with or without summer drought. We measured litter decomposition, carbon mineralization and enzyme activities, substrate-induced respiration, and the relative abundance of soil saprophytic fungi immediately after drought and at 6 and 12 weeks after rewetting. 3. Drought decreased all soil functions regardless of plant and soil origin except one; soil respiration was less reduced in soils of range-expanding plant communities, suggesting stronger resistance to drought. After rewetting, soil functioning responses depended on plant and soil origin. Soils of native plant communities with a history of drought had more litter mass loss and higher relative abundance of saprophytic fungi than soils without drought and soils of range expanders. Functions of soil from range expanders recovered in a more conservative manner than soils of natives, as litter mass loss did not exceed the control rates. At the end of the experiment, after rewetting, most soil functions in mesocosms with drought history did not differ anymore from the control. 4. We conclude that functional consequences of range expanding plants and soil biota may interact with effects of drought, and that these effects are most prominent during the first weeks after rewetting of the soil.

opencc-zeroDec 2018View details →
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Data from: Resistance of soil biota and plant growth to disturbance increases with plant diversity

Plant diversity is critical to the functioning of ecosystems, potentially mediated in part by interactions with soil biota. Here, we characterized multiple groups of soil biota across a plant diversity gradient in a long-term experiment. We then subjected soil samples taken along this gradient to drought, freezing, and a mechanical disturbance to test how plant diversity affects the responses of soil biota and growth of a focal plant to these disturbances. High plant diversity resulted in soils that were dominated by fungi and associated soil biota, including increased arbuscular mycorrhizal fungi and reduced plant-feeding nematodes. Disturbance effects on the soil biota were reduced when plant diversity was high, resulting in higher growth of the focal plant in all but the frozen soils. These results highlight the importance of plant diversity for soil communities and their resistance to disturbance, with potential feedback effects on plant productivity.

opencc-zeroDec 2018View details →
zenodo32/100

Data set: Burn severity and soil chemistry are weak drivers of early vegetation succession following a boreal mega-fire in a production forest landscape

<p>Data used in the analyses of the study. Data set on soil chemistry (pH, organic content, nutrient content), plots distance to the fire perimeter, and plant communities (vascular plants and bryophytes) recorded in permanent plots on clearcuts in a burn-severity gradient two and five years following a wildfire. Data collected from a 13000 hectare wildfire that occurred in 2014, in boreal southern Sweden. Calculated trait means from data bases, and plant community data from unburned plots from another study, are are also included here.</p>

opencc-by-4.0Sep 2020View details →
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Data from: Changes in soil pH and their dependence on the species of cereals and strategies for sustainable agriculture

<p>The acidity of the environment is one of the key elements determining proper conditions for crop cultivation. Inappropriate environmental conditions may contribute to numerous changes in plant raw materials. New strategies introduced in agriculture bring with them some uncertainties associated with the adaptation of plants to the soil. Currently, in the EU market, a gradual replacement of conventional strategies in favour of organic ones is observed. The change in fertilization strategy may lead to the emergence of new soil conditions in cultivation. Soil pH and humus content determine the phenomenon of soil fertility as well as soil physical, chemical, and biological properties. Rational and effective management of nutrients is related to the assessment of the content of available nutrients in the soil, as well as to the agronomic assessment of the soil class. This type of treatment is key in the planning of crops rotation. The study aimed to evaluate soil pH after combine harvesting, in wheat, rye, and barley crops cultivation according to two agricultural strategies, viz. ecological and conventional.  In the course of the study mature soil was sampled. The research was carried out on pH meter CP 411 combined with an EPS-1 pH electrode. The obtained soil pH results varied according to the type of cereal grown. Statistical analysis of variance with the significance level of 0.05 showed no significant difference regardless of the implemented agricultural strategy. It is recommended once every 4 years to perform laboratory examination of soil pH for fertilization advice.</p>

opencc-zeroOct 2020View details →
dryad32/100

Data from: Soil solution in Swiss forest stands: a 20 year's time series

<p>Soil solution chemistry is influenced by atmospheric deposition of air pollutants, exchange processes with the soil matrix and soil-rhizosphere-plant interactions. In this study we present the results of the long-term Intercantonal Forest Observation Program in Switzerland with soil solution measurements since 1998 on a current total of 47 plots. The forest sites comprise two major forest types of Switzerland including a wide range of ecological gradients such as different nitrogen (N) deposition and soil conditions. The long-term data set of 20 years of soil solution measurements revealed an ongoing, but site-specific soil acidification. In strongly acidified soils (soil pH below 4.2), acidification indicators changed only slowly over the measured period, possibly due to high buffering capacity of the aluminum buffer (pH 4.2 – 3.8). In contrast, in less acidified sites we observed an increasing acidification rate over time, reflected, for example, by the continuous decrease in the ratio of base cations to aluminum (BC/Al ratio). Nowadays, the main driver of soil acidification is the high rate of N deposition, causing cation losses and hampering sustainable nutrient balances for tree nutrition. Mean nitrate leaching rates for the years 2005-2017 were 9.4 kg N ha<sup>‑1</sup> yr<sup>‑1</sup>, ranging from 0.04 to 53 kg N ha<sup>‑1</sup> yr<sup>‑1</sup>. Three plots with high N input had a remarkable low nitrate leaching. Both N deposition and nitrate leaching have decreased since 2000. However, the latter trend may be partly explained due to increased drought in recent years. Nonetheless, those high N depositions are still affecting the majority of the forest sites. Taken together, this study gives evidence of anthropogenic soil acidification in Swiss forest stands. The underlying long-term measurements of soil solution provides important information on nutrient leaching losses and the impact climate change effects such as droughts.. Furthermore, this study improves the understanding of forest management and tree mortality regarding varying nitrate leaching rates.</p>

opencc-zeroSep 2020View details →
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Data from: Montane meadows: A soil carbon sink or source?

<p>As the largest biogeochemically active terrestrial reserve of carbon (C), soils have the potential to either mitigate or amplify rates of climate change. Ecosystems with large C stocks and high rates of soil C sequestration, in particular, may have outsized impacts on regional and global C cycles. Montane meadows have large soil C stocks relative to surrounding ecosystems. However, anthropogenic disturbances in many meadows may have altered the balance of C inputs and outputs, potentially converting these soils from net C sinks to net sources of C to the atmosphere. Here, we quantified ecosystem-level C inputs and outputs to estimate the annual net soil C flux from 13 montane meadows spanning a range of conditions throughout the California Sierra Nevada. Our results suggest that meadow soils can be either large net C sinks (577.6 ± 250.5 g C m−2 y−1) or sources of C to the atmosphere (− 391.6 ± 154.2 g C m−2 y−1). Variation in the direction and magnitude of net soil C flux appears to be driven by belowground C inputs. Vegetation species and functional group composition were not associated with the direction of net C flux, but climate and watershed characteristics were. Our results demonstrate that, per unit area, montane meadows hold a greater potential for C sequestration than the surrounding forest. However, legacies of disturbance have converted some meadows to strong net C sources. Accurate quantification of ecosystem-level C fluxes is critical for the development of regional C budgets and achieving global emissions goals.</p>

opencc-zeroOct 2020View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.