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Supplementary material 1 from: Mulema J, Phiri S, Bbebe N, Chandipo R, Chijikwa M, Chimutingiza H, Kachapulula P, Kankuma Mwanda F, Matimelo M, Mazimba-Sikazwe E, Mfune S, Mkulama M, Moonga M, Mphande W, Mufwaya M, Mulenga R, Mweemba B, Ndalamei Mabote D, Nkunika P, Nthenga I, Tembo M, Chowa J, Odunga S, Opisa S, Kasoma C, Charles L, Makale F, Rwomushana I, Phiri NA (2024) Rapid risk assessment of plant pathogenic bacteria and protists likely to threaten agriculture, biodiversity and forestry in Zambia. NeoBiota 91: 145-178. https://doi.org/10.3897/neobiota.91.113801
All data from horizon scanning for Zambia
Data from: Distribution models predict climate-related range alteration or extinction of eleven threatened tropical rainforest trees in the Western Ghats
<p>This dataset contains information related to species occurence data and species distribution modeling (SDM) analysisr of eleven threatened tree species. Occurrences are compiled from extensive field surveys in the Anamalai Hills along with data from the Global Biodiversity Information Facility (GBIF.org) and earlier work done within the southern Western Ghats, India.</p> <p>References:<br>Page, N. V., & Shanker, K. (2020). Climatic stability drives latitudinal trends in range size and richness of woody plants in the Western Ghats, India. PLOS ONE, 15(7), e0235733. https://doi.org/10.1371/journal.pone.0235733</p> <p>GBIF.org (2022) GBIF Occurrence Download, 2 August 2022. DOI:10.15468/dl.gnvuxj</p> <p><br>AUTHOR #1<br>1. Name: A.P. Madhavan<br>2. Work Address: Nature Conservation Foundation, 1311, 12th A Main, Vijayanagar 1st Stage, Mysuru 570017, Karnataka, India<br>3. Email address: madhavan@ncf-india.org<br>4. ORCID: https://orcid.org/0009-0009-2754-8256</p> <p>AUTHOR #2<br>1. Name: Kshama Bhat<br>2. Work Address: Nature Conservation Foundation, 1311, 12th A Main, Vijayanagar 1st Stage, Mysuru 570017, Karnataka, India<br>3. Email address: kshama@ncf-india.org<br>4. ORCID: ORCID: https://orcid.org/0000-0002-6190-2687</p> <p>AUTHOR #3<br>1. Name: Srinivasan Kasinathan<br>2. Work Address: Nature Conservation Foundation, 1311, 12th A Main, Vijayanagar 1st Stage, Mysuru 570017, Karnataka, India<br>3. Email address: srini@ncf-india.org<br>4. ORCID: https://orcid.org/0000-0001-7323-6653</p> <p>AUTHOR #4<br>1. Name: Divya Mudappa <br>2. Work Address: Nature Conservation Foundation, 1311, 12th A Main, Vijayanagar 1st Stage, Mysuru 570017, Karnataka, India<br>3. Email address: divya@ncf-india.org <br>4. ORCID: https://orcid.org/0000-0001-9708-4826</p> <p>AUTHOR #5<br>1. Name: Navendu Page<br>2. Work Address: Wildlife Institute of India, Post Box No. 18, Chandrabani, Dehradun, Uttarakhand 248001, India<br>3. Email address: navendu.page@gmail.com<br>4. ORCID: ORCID: https://orcid.org/0000-0002-9413-7571</p> <p>AUTHOR #6<br>1. Name: T. R. Shankar Raman <br>2. Work Address: Nature Conservation Foundation, 1311, 12th A Main, Vijayanagar 1st Stage, Mysuru 570017, Karnataka, India<br>3. Email address: trsr@ncf-india.org <br>4. ORCID: https://orcid.org/0000-0002-1347-3953</p> <p>Keywords: tropical rainforest, climate change, tree distributions, species distribution models, range shifts, Western Ghats</p> <p><br>Geographic Coverage:<br>1. Location/Study Area: Southern Western Ghats Montane Rain Forests, Southern Western Ghats Moist Deciduous Forests, India<br>2. GPS coordinates: SWG (73.95° – 80.33° E, 8.06° – 13.11°N) </p> <p>Temporal coverage<br>Starts: 2020-08-01<br>Ends: 2024-03-28</p> <p>Besides this README.txt file, the dataset includes three comma-delimited text files (csv); two R scripts, and 1 kml file of surveyed trails.</p> <p>CSV files with the data in columns as explained below:</p> <p>1) Focal_Tree_Dat.csv</p> <p>Comp: Number identifier<br>FT_ID: Unique tree no for each individual<br>Focal_tree: Scientific name of species<br>Date: Date of occurrence observation<br>Place: Area/locality description<br>Trail: Unique trail ID<br>Waypoint: Waypoint number <br>Time: Time in hh:mm format <br>Location: Specific description of occurrence locality <br>Latitude: Latitude in decimal degrees N <br>Longitude: Longitude in decimal degrees E <br>Elevation: Elevation in metres <br>Slope: Cateory of slope <br>ID_Notes: Notes on identification<br>Phenophase: Phenophase expression at the time of observation <br>GBH: Girth at breast height in centimetres (comma separated list of numbers in case of multi-stemmed trees) <br>Tree_ht: Tree height in metres<br>Canopy_ht: Maximimum height of the surrounding canopy in metres<br>Substrate: Soil substrate composition<br>Invasives: Name of invasive species (if present) <br>Stature: Vegetation strata position <br>Relatively: Stature of focal individual relative to other surrounding individuals <br>Deadwood: Description of deadwood on the tree <br>Damage: Description of damage on the bole <br>Shape: Description of tree canopy shape<br>Closure: Canopy closure at focal tree <br>Seedlings: Number of conspecific seedlings present in 5 m radius of focal tree <br>Saplings: Number of conspecific saplings present in 5 m radius of focal tree<br>Trees: Number of conspecific trees present in 5 m radius of focal tree<br>Remarks: Remarks </p> <p>2) Ffspecies.csv</p> <p>Source: Source of occurrence <br>ID: State/location of occurrence<br>Region: Biogeographic region of occurrence <br>decimalLatitude: Latitude in decimal degrees N<br>decimalLongitude: Longitude in decimal degrees E<br>species: Scientific name of species</p> <p>4) ft_surveys.csv</p> <p>Date: Date of survey of sample trail<br>Prot_type: Category indicating whether protected area or fragment <br>Place: Area/locality description<br>Route_description: Specific landmark description of trail<br>Trail: Unique trail ID <br>Trail_distance: Tracked distance of trail in km <br>Corrected_trail_distance: Corrected distance of trail in km<br>Track_filename_kml: File name of gps track<br>Sample_collected: Name of species if sample collected <br>Observers: Name of observers <br>Remarks: Remarks</p> <p>ANALYSES SCRIPTS<br>flexsdm_script.R<br>Script containing the analysis of all maxent distribution modeling and associated analysis</p> <p>Franklinia_density.Rmd<br>Script of density and abundance related analysis</p> <p> </p>
Fig. 2 in Novitates neocaledonicae V: Eugenia plurinervia N. Snow, Munzinger & Callm. (Myrtaceae), a new threatened species with distinct leaves
Fig. 2. – Distribution map of subpopulations of Eugenia plurinervia N. Snow, Munzinger & Callm. (yellow dots) in an area adjacent to mining
Fig. 1 in Novelties from the Northern Mountains Complex of Madagascar V: A new threatened Pandanus (Pandanaceae) from the Kalobinono massif
Fig. 1. – The Galoko mountain range with the Galoko summit on the left, the distinctly shaped domes of the Kalobinono on the right
Figure 8 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 8 A holotype left pedipalp showing the trichobothria distribution B details of chelal teeth C distal part of fixed chelal finger (lateral view) D detail with emphasis on the micro–denticles in two interdental spaces, on teeth 15 and 29, respectively E pedipalp femur F distal part of fixed chelal finger (ventral view).
Figure 7 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 7 Pseudochthonius ramalho sp. nov., male A carapace dorsal view, and detail of the anterior margin (with the epistome) B right chelicera (dorsal view) C detail of the rallum D coxa I and II E details of coxal spines F leg I (lateral view) G leg IV (lateral view).
Figure 2 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 2 A Gruna do Vandercir cave B surroundings of Gruna do Vandercir cave with its dry characteristic vegetation (Images A Adriano GambariniB Maria Elina Bichuette).
Figure 1 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 1 Map depicting the known distribution of Pseudochthonius ramalho sp. nov. in Gruna do Vandercir cave, located in Bahia state. The cave belongs to karst area in Jacaré formation, Bambuí group.
Figure 11 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 11 Comparison of morphology among some species of Pseudochthonius from Brazil A Holotype Pseudochthonius ramalho sp. nov. (troglobitic) (LES9601) and left chela (A1) BPseudochthonius strinatii (troglobitic) (LES9391) and pedipalp detail (B1) CPseudochthonius biseriatus (troglobitic) (LES9434) and pedipalp detail (C1) DPseudochthonius sp. (epigean) (LES9629) and pedipalp detail (D1) (Images: A D. M. von Schimonsky; A1–C1 L.B.R Fernandes; D–D1 M. E. Bichuette).
Figure 5 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 5 Pseudochthonius ramalho sp. nov. scanning electron images. Paratype female, habitus A dorsal view B ventral view C zoom in on the anterior margin of the carapace with eye spots denoted with red circle. (Images: Luciana B. R. Fernandes).
Figure 6 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 6 Pseudochthonius ramalho sp. nov. female paratype scanning electron images A detail on the right chelicera of serrula exterior and rallumB detail on the right pedipalp trichobothrium isb and ib, lateral C left pedipalp D detail on the left pedipalp teeth. (Images: L. B. R. Fernandes).
Figure 10 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 10 Morphological differences on the carapace of hypogean and epigean species of Pseudochthonius: eyes (denoted with red circle), and the narrowing of the posterior region of the carapace (marked with dashed line on the sides of the carapace) A hypogean P. ramalho sp. nov. (male) B epigean P. thibaudiC epigean P. arabicus.
Figure 3 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 3 Holotype of Pseudochthonius ramalho sp. nov. in natural habitat, at Gruna do Vandercir cave, Serra do Ramalho, Bahia. (Image: Adriano Gambarini).
Figure 9 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 9 Distribution of epigean and hypogean Pseudochthonius species in Brazil, with troglobitic representatives detached.
Figure 3 in Reproductive biology of direct developing and threatened frog Adelophryne maranguapensis (Anura, Eleutherodactylidae) reveals a cryptic reproductive mode for anurans and the first record of parental care for the genus
Figure 3. Female Adelophryne maranguapensis showing parental care activity (clutch 13, Table 1).
Figure 1 in Reproductive biology of direct developing and threatened frog Adelophryne maranguapensis (Anura, Eleutherodactylidae) reveals a cryptic reproductive mode for anurans and the first record of parental care for the genus
Figure 1. Fieldwork areas. Riacho Beija-flor (a) and Pico da Rajada (b).
Supplementary material 2 from: Muraro M, Romagnoli S, Barzaghi B, Falaschi M, Manenti R, Ficetola GF (2021) Invasive predators induce plastic and adaptive responses during embryo development in a threatened frog. NeoBiota 70: 69-86. https://doi.org/10.3897/neobiota.70.65454
Raw data
Data from: Occasional long-distance dispersal may not prevent inbreeding in a threatened butterfly
<p><strong>Background:</strong> To set up successful conservation measures, detailed knowledge on the dispersal and colonization capacities of the focal species and connectivity between populations is of high relevance. We developed species-specific nuclear microsatellite molecular markers for the grayling (<i>Hipparchia semele</i>), a butterfly endemic to Europe and of growing conservation concern in North-West Europe, and report on its population genetics, in a fragmented, anthropogenic landscape in Belgium. Our study included samples from 23 different locations nested in two regions and additional historical samples from two locations. We assessed contemporary<span>, </span><span><span>long-distance</span></span><span> disper</span>sal based on genetic assignment tests and investigated the effect of habitat loss and fragmentation on the population genetic structure and genetic variation using data of nine microsatellite loci.</p> <p><strong>Results:</strong> Detected dispersal events covered remarkably long distances, which were up to ten times larger than previously reported colonisation distances, with the longest movement recorded in this study even exceeding 100 km. However, observed frequencies of<span> </span><span><span>long-distance</span></span><span> </span>dispersal were low. Our results point to the consequences of the strong population decline of the last decades, with evidence of inbreeding in 72% of the recently sampled populations and low estimates of effective population sizes (<i>Ne</i>) (ranging from 20 to 54 individuals).</p> <p><strong>Conclusions:</strong> Our study shows low frequencies of<span> </span><span><span>long-distance</span></span><span> dispersal, which is unable to prevent inbreeding </span><span><span>in most of the local populations.</span></span><span> We discuss the significance for species conservation including future translocation events and </span><span><span>discuss</span></span><span> appropriate conservation strategies to maintain viable </span><span><span>grayling</span></span><span> (meta)p</span>opulations in highly fragmented, anthropogenic landscapes.</p>
Supplementary material 2 from: Kenis M, Agboyi LK, Adu-Acheampong R, Ansong M, Arthur S, Attipoe PT, Baba A-SM, Beseh P, Clottey VA, Combey R, Dzomeku I, Eddy-Doh MA, Fening KO, Frimpong-Anin K, Hevi W, Lekete-Lawson E, Nboyine JA, Ohene-Mensah G, Oppong-Mensah B, Nuamah HSA, van der Puije G, Mulema J (2022) Horizon scanning for prioritising invasive alien species with potential to threaten agriculture and biodiversity in Ghana. NeoBiota 71: 129-148. https://doi.org/10.3897/neobiota.71.72577
Risk scores for potential invasive alien plant pests in Ghana
Supplementary material 1 from: Kenis M, Agboyi LK, Adu-Acheampong R, Ansong M, Arthur S, Attipoe PT, Baba A-SM, Beseh P, Clottey VA, Combey R, Dzomeku I, Eddy-Doh MA, Fening KO, Frimpong-Anin K, Hevi W, Lekete-Lawson E, Nboyine JA, Ohene-Mensah G, Oppong-Mensah B, Nuamah HSA, van der Puije G, Mulema J (2022) Horizon scanning for prioritising invasive alien species with potential to threaten agriculture and biodiversity in Ghana. NeoBiota 71: 129-148. https://doi.org/10.3897/neobiota.71.72577
Guidelines for horizon scanning for plant pests potentially threatening Ghana
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.