Find research datasets worth reusing
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2,373
datasets available to search
ShareScore release 0.9.0
Dataset results
2,373 results for “Platform”
Data from: Marine fouling assemblages on offshore gas platforms in the southern North Sea: effects of depth and distance from shore on biodiversity
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Data from: Early and Middle Triassic trends in diversity, evenness, and size of foraminifers on a carbonate platform in south China: Implications for tempo and mode of biotic recovery from the end-Permian mass extinction
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Data from: Harnessing stratigraphic bias at the section scale: conodont diversity in the Homerian (Silurian) of the Midland Platform, England
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Evaluation of BugBox, a software platform for AI-assisted bioinventories of arthropods
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Data from: Marine communities on oil platforms in Gabon, West Africa: high biodiversity oases in a low biodiversity environment
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Data from: Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
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A phenotypic screening platform utilising human spermatozoa identifies compounds with contraceptive activity
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Data from: Caveolae and Bin1 form ring-shaped platforms for T-tubule initiation
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Accuracy of genomic selection for growth and wood quality traits in two control-pollinated progeny trials using exome capture as genotyping platform in Norway spruce
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The Alginate Immobilization of Metabolic Enzymes (AIME) platform retrofits an estrogen receptor transactivation assay with metabolic competence
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Data from: Trepostomate bryozoans from the upper Katian (Upper Ordovician) of Morocco: gigantism in high latitude Gondwana platforms
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Biometric conversion factors as a unifying platform for comparative assessment of invasive freshwater bivalves
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Data from: Genomic prediction accuracies in space and time for height and wood density of Douglas-fir using exome capture as the genotyping platform
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Chimpanzee identification and social Network construction through an online citizen science platform
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Example single molecule tracking data from: A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms
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Dataset for the paper: "The Gas Accessible Membrane Electrode (GAME): A Versatile Platform for Elucidating Electrocatalytic Processes Using Real Time and In Situ Hyphenated Electrochemical Techniques"
<p>The data in this spreadsheet was used to produce the figures in the paper</p> <p>Authors: Guohui Zhang, Anthony Kucernak</p> <p>Title: The Gas Accessible Membrane Electrode (GAME): A Versatile Platform for Elucidating Electrocatalytic Processes Using Real Time and In Situ Hyphenated Electrochemical Techniques </p> <p>Journal: ACS Catalysis, 2020</p> <p>DOI: 10.1021/acscatal.0c02433</p> <p>Please cite the above reference if you wish to use this data<br> DOI of data:10.5281/zenodo.3985811</p>
Data from: Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix)
Next-generation sequencing (NGS) of amplicons is used in a wide variety of contexts. In many cases, NGS amplicon sequencing remains overly expensive and inflexible, with library preparation strategies relying upon the fusion of locus-specific primers to full-length adapter sequences with a single identifying sequence or ligating adapters onto PCR products. In Adapterama I, we presented universal stubs and primers to produce thousands of unique index combinations and a modifiable system for incorporating them into Illumina libraries. Here, we describe multiple ways to use the Adapterama system and other approaches for amplicon sequencing on Illumina instruments. In the variant we use most frequently for large-scale projects, we fuse partial adapter sequences (TruSeq or Nextera) onto the 5' end of locus-specific PCR primers with variable-length tag sequences between the adapter and locus-specific sequences. These fusion primers can be used combinatorially to amplify samples within a 96-well plate (eight forward primers + 12 reverse primers yield 8 x 12 = 96 combinations), and the resulting amplicons can be pooled. The initial PCR products then serve as template for a second round of PCR with dual-indexed iTru or iNext primers (also used combinatorially) to make full-length libraries. The resulting quadruple-indexed amplicons have diversity at most base positions and can be pooled with any standard Illumina library for sequencing. The number of sequencing reads from the amplicon pools can be adjusted, facilitating deep sequencing when required or reducing sequencing costs per sample to an economically trivial amount when deep coverage is not needed. We demonstrate the utility and versatility of our approaches with results from six projects using different implementations of our protocols. Thus, we show that these methods facilitate amplicon library construction for Illumina instruments at reduced cost with increased flexibility. A simple web page to design fusion primers compatible with iTru primers is available at: http://baddna.uga.edu/tools-taggi.html. A fast and easy to use program to demultiplex amplicon pools with internal indexes is available at: https://github.com/lefeverde/Mr_Demuxy.
Data from: A virtual molecular tumor board platform to improve efficiency and scalability of delivering precision oncology to physicians and their patients
OBJECTIVES: Scalable informatics solutions that provide molecularly-tailored treatment recommendations to clinicians are needed to streamline Precision Oncology in care settings. MATERIALS AND METHODS: We developed a cloud-based virtual molecular tumor board (VMTB) platform that included a knowledgebase, scoring model, rules engine, an asynchronous virtual chat room and a reporting tool that generated a treatment plan for each of the 1725 patients based on their molecular profile, previous treatment history, structured trial eligibility criteria, clinically relevant cancer gene-variant assertions, biomarker-treatment associations, and current treatment guidelines. The VMTB systematically allows clinician users to combine expert-curated data and structured data from clinical charts along with molecular testing data to develop consensus on treatments, especially those that require off-label and clinical trial considerations. RESULTS: The VMTB was used as part of the cancer care process for a focused subset of 1725 patients referred by advocacy organizations wherein resultant personalized reports were successfully delivered to treating oncologists. Median turnaround time from data receipt to report delivery decreased from 14 days to 4 days over 4 years while the volume of cases increased nearly twofold each year. Using a novel scoring model for ranking therapy options, oncologists chose to implement the VMTB-derived therapies over others, except when pursuing immunotherapy options without molecular support. DISCUSSION: VMTBs will play an increasingly critical role in precision oncology as the compendium of biomarkers and associated therapy options available to a patient continues to expand. CONCLUSION: Further development of such clinical augmentation tools that systematically combine patient-derived molecular data, real world evidence from electronic health records, and expert curated knowledgebases on biomarkers with computational tools for ranking best treatments can support care pathways at point of care.
Generating Adaptation Plans Based on Quality Models for Cloud Platforms
<p>Apresentação referente ao artigo "Generating Adaptation Plans Based on Quality Models for Cloud Platforms". SBES 2020 - Trilha de Ideias Inovadoras e Resultados Emergentes.</p>
Generating Trustworthiness Adaptation Plans Based on Quality Models for Cloud Platforms
<p>Apresentação referente ao artigo "Generating Trustworthiness Adaptation Plans Based on Quality Models for Cloud Platforms". SBCARS 2020 - Artigos Completos</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.