Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3,684
datasets available to search
ShareScore release 0.9.0
Dataset results
3,684 results for “extract”
CompactIE: Compact Facts in Open Information Extraction [Dataset]
<p>Dataset for the paper <a href="https://arxiv.org/abs/2205.02880">"CompactIE: Compact Facts in Open Information Extraction"</a>. </p>
FIGURE. Cladosporium benschii (VIC 44412, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–J. Non-geniculate macronematous conidiophores and conidia. K. Conidiogenous cells with slightly protuberant loci. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Cladosporium benschii (VIC 44412, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–J. Non-geniculate macronematous conidiophores and conidia. K. Conidiogenous cells with slightly protuberant loci. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E–M = 20 µM.
FIGURE. Cladosporium bambusicola (VIC 44237, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–F. Conidiophore and bigger conidia. G–H. Conidiophores and smaller conidia. I. Stromatic hyphal aggregation. J–K. Micronematous conidiophores. L. Ramoconidia and conidia. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Cladosporium bambusicola (VIC 44237, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–F. Conidiophore and bigger conidia. G–H. Conidiophores and smaller conidia. I. Stromatic hyphal aggregation. J–K. Micronematous conidiophores. L. Ramoconidia and conidia. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM.
FIGURE. Cladosporium aulonemiae (VIC 44413, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–G. Macronematous conidiophores and numerous conidia; H–I. Formation of loci in close succession; I. Spread polysaccharide-like material; J. Micronematous conidiophores; K. Ramoconidia and conidia; L. Microcyclic conidiogenesis; M. Stromatic hyphal aggregation. Scale bars: E–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Cladosporium aulonemiae (VIC 44413, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–G. Macronematous conidiophores and numerous conidia; H–I. Formation of loci in close succession; I. Spread polysaccharide-like material; J. Micronematous conidiophores; K. Ramoconidia and conidia; L. Microcyclic conidiogenesis; M. Stromatic hyphal aggregation. Scale bars: E–M = 20 µM.
Appendix for "Is JavaScript Call Graph Extraction Solved Yet? A Comparative Study of Static and Dynamic Tools"
<p><strong>Abstract</strong></p> <p>The popularity and wide adoption of JavaScript both at the client and server-side makes its code analysis more essential than ever before. Most of the algorithms for vulnerability analysis, coding issue detection, or type inference rely on the call graph representation of the underlying program. Luckily, there are quite a few tools to get this job done already. However, their performance in vitro and especially in vivo has not yet been extensively compared and evaluated.</p> <p>In this paper, we systematically compare five static and two dynamic approaches for building JavaScript call graphs on 26 WebKit SunSpider benchmark programs and two static and two dynamic methods on 12 real-world Node.js modules. The tools under examination using static techniques were <em>npm call graph</em>, <em>IBM WALA</em>, <em>Google Closure Compiler</em>, <em>Approximate Call Graph</em>, and <em>Type Analyzer for JavaScript</em>. We performed dynamic analyzes relying on the <em>nodejs-cg</em> tool (a customized Node.js runtime) and the <em>NodeProf </em>instrumentation and profiling framework.</p> <p>We provide a quantitative evaluation of the results, and a result quality analysis based on 941 manually validated call edges. On the SunSpider programs, which do not take any inputs, so dynamic extraction could be complete, all the static tools also performed well. For example, TAJS found 93% of all edges while having a 97% precision compared to the precise dynamic call graph. When it comes to real-world Node.js modules, our evaluation shows that static tools struggle with parsing the code and fail to detect a significant amount of call edges that dynamic approaches can capture. Nonetheless, a significant number of edges not detected by dynamic approaches are also reported. Among these, however, there are also edges that are real, but for some reason the unit tests did not execute the branches in which these calls were included.</p>
Automatic unsupported electromembrane extraction followed by on-line electrochemical detection of diclofenac in urine
<p>Raw voltammograms (including calibration) of data presented in Table 1 of the article entitled "Programmable millifluidic platform integrating automatic electromembrane extraction clean-up and in-line electrochemical detection: A proof of concept"<strong> </strong>published in ACS Sensors (<a href="https://doi.org/10.1021/acssensors.2c01648">10.1021/acssensors.2c01648</a>)</p>
[IO Islamic 611] Historical and Geographical Extracts
<ul> <li><strong>Extracts.</strong></li> <li><strong>This manuscript is now IO Islamic 728 in the India Office collections.</strong></li> <li><strong>[metadata:</strong> <a href="https://en.wikipedia.org/wiki/Carl_Hermann_Eth%C3%A9"><strong>Hermann Ethé</strong></a><strong><em>, </em></strong><a href="http://doi.org/10.5281/zenodo.1323681"><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> </a><a href="http://doi.org/10.5281/zenodo.1323681"><strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong></a> <strong>number 611 here with notations and hyperlinks].</strong></li> </ul> <p>728</p> <p>Historical and geographical extracts.</p> <p>Contents:</p> <p>1.A few extracts from a تأريخ مير ابراهيم الحسينى الموسوى (not met with hitherto), on ff. 8<sup>a</sup>-15<sup>b</sup>, 22 and 23, consisting of short accounts of the emperors Akbar, Jahângîr, Shâhjahân, etc.</p> <p>2.Extracts from the Haft Iḳlîm, beginning with a ذكر هفت اقليم (a general account of the seven climates, somewhat like the preceding انتخاب), on ff. 99<sup>a</sup>-151<sup>b</sup>, and concluding with a مجملئ سلاطين دهلى كه در هفت اقليم آورده بتحرير مى آرد (the general account of the Muḥammad rulers of Dihlî, which is found on fol. 153<sup>a</sup>, first line sq. in No. 724, col. 406 above), on ff. 153<sup>a</sup>-176<sup>b</sup>.</p> <p>3.Another extract from the تأريخ مير ابراهيم, containing a تعريف امصار (description of cities), and beginning with Akbarâbâd, ff. 177<sup>a</sup>-190<sup>b</sup>.</p> <p>An index of these miscellanies is found on ff. 2<sup>b</sup>-7<sup>a</sup>.</p> <p>No. 611, ff. 2<sup>b</sup>-15, 22, 23, 99-190, ll. 21; careless Nasta’lîḳ; size, 8<sup>7/8</sup> in. by 4<sup>7/8</sup> in.</p> <p> </p>
Crossref datadump extraction for benchmarking purpose of Jsonpath
<p> Several aggregation of Crossref datadump to amplify the size for benchmarking purpose.</p>
The ARRIVE Essential 10: author checklist – Gastroprotective effect of Zinnia elegans extracts against ethanol-Induced induced gastric mucosal damage through downregulation of TLR4 and inflammatory cytokines.
<p>The ARRIVE Essential 10: author checklist – Gastroprotective effect of Zinnia elegans extracts against ethanol-Induced induced gastric mucosal damage through downregulation of TLR4 and inflammatory cytokines.</p>
Privacy Challenges and Solutions in Smart Health: A Systematic Literature Review Extraction Forms
<p>Data extraction forms for a Systematic Literature Review on Privacy Challenges and Solutions in Smart Health</p>
Supplementary material 1 from: Giurginca A, Šustr V, Tajovský K, Giurginca M, Matei I (2015) Spectroscopic parameters of the cuticle and ethanol extracts of the fluorescent cave isopod Mesoniscus graniger (Isopoda, Oniscidea). In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 111–125. https://doi.org/10.3897/zookeys.515.9395
Autofluorescence of living Mesoniscus graniger: Explanation note: Living Mesoniscus graniger individuals recorded by Canon EOS camera on the cave sediment inside Ardovská Cave (Slovak Karst, Slovakia) under white LED lamp and UV lamp consecutively.
Information Extraction System: a case study in information extraction from the Polish Fire Service rescue reports
<p>The mind maps of the car accident ontologies.</p>
Raw data and concentration response curves for: Neurotoxic mixture effects of chemicals extracted from blood of pregnant women
<p>The raw data and concentration response curves of the single chemicals, sample extracts, blanks and controls, as well as designed mixtures. The assay was a neurite outgrowth inhibition assay based on the SH-SY5Y neuroblastoma cell line. Reported endpoints were neurite outgrowth inhibition relative to unexposed cells (%), and cytotoxicity relative to unexposed cells (%). </p>
Datasets for "Reading Order Independent Metrics for Information Extraction in Handwritten Documents"
<p>This repository includes the five datasets used for our paper entitled <em>Reading Order Independent Metrics for Information Extraction in Handwritten Documents</em>, in which we compare various metrics to evaluate end-to-end information extraction from scanned documents.</p> <h2>Datasets</h2> <p>Five datasets are released following the BIO format:</p> <ul> <li>IAM</li> <li>Simara</li> <li>POPP</li> <li>Esposalles</li> <li>French Military Records</li> </ul> <p>For each dataset, we provide the following data (on test sets):</p> <ul> <li>Ground truth annotations (<code>gt/</code>)</li> <li>Automatic predictions (<code>dan/</code>)</li> <li>Automatic predictions with entities appearing in random order (<code>dan_shuffled/</code>)</li> </ul> <p>The data is organized as follows:</p> <p><code>├── Dataset name/</code><br><code>│ ├── gt/</code><br><code>│ ├── dan/</code><br><code>│ └── dan_shuffled/</code></p> <h2>Metrics</h2> <p>To install the <a href="https://pypi.org/project/ie-eval/"><code>ie-eval</code></a> package, run <code>pip install ie-eval</code>.</p> <p>To compute all metrics on a specific dataset, run:<br><br><code>ie-eval all --label-dir IAM_paragraph/gt/ --prediction-dir IAM_paragraph/dan/</code><br><br></p> <p>To learn more about the various options, use the <code>--help</code> argument or read the <a href="https://ie-eval-ner-metrics-050f40e80b04480e2310d39ad338de778f6bec80e18.pages.teklia.com/">documentation</a>.</p> <p> </p>
Data Extraction Sheet
Open the record for dataset details and reuse information.
Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies_Dataset_Rscript
<p>Datasets and Rscript associated with paper draft titled: "<span>Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies".</span></p> <p> </p> <p>Abstract: <span>Studies in evolution, ecology and conservation are increasingly based on genetic and genomic inferences. With increased focus on molecular approaches, ethical concerns about destructive or more invasive techniques need to be considered, with a push for minimally invasive sampling to be optimised. Buccal swabs have been increasingly used to collect DNA in a number of taxa, including amphibians.<span> </span>However, DNA yield and purity from swabs is often low, limiting its use. In this study we compare different types of swabs, preservation method and storage, and DNA extraction technique in three case studies to assess the optimal approach for recovering DNA in anurans. Out of the five different types of swab that we tested, Isohelix MS-02 and Rapidry swabs generated higher DNA yields than other swabs. When comparing storage buffers, ethanol is a better preservative than a non-alcoholic alternative. Dried samples resulted in similar or better final DNA yields than ethanol-fixed samples if kept cool. DNA extraction via a Qiagen</span><span>™</span><span> DNeasy Blood and Tissue Kit and McHale’s salting out extraction method resulted in similar DNA yields but the Qiagen</span><span>™</span><span> kit extracts contained less contamination. We also found that samples produce better DNA recovery if frozen as soon as possible after collection. We provide recommendations for sample collection and extraction under different conditions, including budgetary considerations, size of individual sampled, access to cold storage facilities, and DNA extraction methodology. Maximising efficacy of all of these factors for better DNA recovery will allow buccal swabs to be used for genetic and genomic studies in a range of vertebrates.</span></p>
Synthetic dataset and prediction files for the paper "Denoising of Geodetic Time Series Using Spatiotemporal Graph Neural Networks: Application to Slow Slip Event Extraction", by Costantino et al. (2024)
<p>Synthetic database used for training and evaluation of SSEdenoiser</p>
Dataset extracted from En-Ru MultiUN corpus using data selection
Open the record for dataset details and reuse information.
Data Extraction_Heimrich Alexander
<p>The Data Extraction was conducted to support the Research Questions for the Master Thesis: "<span>Enhancing Process Mining Robustness: Investigating Process Mining Techniques, Algorithms,<span> </span>and<span> </span>Anomaly<span> </span>Detection<span> </span>Methods<span> </span>in the Presence of Noisy"</span></p>
Prebiotic Systems Containing Anthocyanin-Rich Pomegranate Flower Extracts with Antioxidant and Antidiabetic Effects
<p>Publication and related data</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.