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1,751 results for “molecular phylogenetics”
FIGURE 14 in Two new species of Phyllodistomum Braun, 1899 (Digenea: Gorgoderidae), from freshwater fishes (Cyprinodontiformes: Goodeidae: Goodeinae) in central Mexico: An integrative taxonomy approach using morphology, ultrastructure and molecular phylogenetics
FIGURE 14. Coalescent-based phylogenetic tree obtained from the species tree analysis of the combined data set (COI+28S). The scale bar represents the number of nucleotide substitutions per site. Filled circles above/below branches represent Bayesian posterior probability ≥ 0.95. GenBank accession numbers of the new species are given in the taxonomic remarks section.
FIGURES 6–9 in Two new species of Phyllodistomum Braun, 1899 (Digenea: Gorgoderidae), from freshwater fishes (Cyprinodontiformes: Goodeidae: Goodeinae) in central Mexico: An integrative taxonomy approach using morphology, ultrastructure and molecular phylogenetics
FIGURES 6–9. Scanning electron microscopy of a specimen of Phyllodistomum cribbi n. sp. 6. Adult, ventral view. 7. Oral sucker, showing 4 pairs of papillae. 8. Ventral sucker, showing 3 pairs of papillae. 9. Ventral surface of hindbody exhibiting papillae on the tegument.
FIGURES 2–5 in Two new species of Phyllodistomum Braun, 1899 (Digenea: Gorgoderidae), from freshwater fishes (Cyprinodontiformes: Goodeidae: Goodeinae) in central Mexico: An integrative taxonomy approach using morphology, ultrastructure and molecular phylogenetics
FIGURES 2–5. Line drawings of the holotype of P. cribbi n. sp. and P. wallacei n. sp., and detail of the male reproductive system of both species 2. Phyllodistomum cribbi n. sp. from Zoogoneticus quitzeoensis, ventral view. 3. Detail of the cirrus sac of P. cribbi n. sp. 4. Phyllodistomum wallacei n. sp. from Ilyodon furcidens, ventral view. 5. Detail of the cirrus sac of P. wallacei n. sp. Symbols: os = oral sucker, gp = genital pore, c = cecum, vs = ventral sucker, vg = vitelline gland, o = ovary, t = testis, e = eggs.
FIGURE 1. Hydrological systems and collection sites for Phyllodistomum cribbi n in Two new species of Phyllodistomum Braun, 1899 (Digenea: Gorgoderidae), from freshwater fishes (Cyprinodontiformes: Goodeidae: Goodeinae) in central Mexico: An integrative taxonomy approach using morphology, ultrastructure and molecular phylogenetics
FIGURE 1. Hydrological systems and collection sites for Phyllodistomum cribbi n. sp. (square) and P. wallacei n. sp. (circles) in central Mexico. Full green circles and square correspond to localities where specimens were collected for molecular phylogenetic analyses; full grey circle and square indicate specimens identified either as Dendrorchis sp. or Phyllodistomum sp. from previous studies. These records were not included in the phylogenetic analyses in this study.
FIGURE 6 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 6. Type locality of Liolaemus crandalli. Upper: general view of the region around Park Ranger Station on Area Natural Protegida Auca Mahuida. Below: close view of the common outcrops where lizards were collected or observed basking or hiding in crevices.
FIGURE 4 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 4. Variation in dorsal coloration of several individuals observed at type locality; all in natural conditions. Bottom photograph, an adult male of Liolaemus elongatus showing the typical dorsal pattern in western Chubut (region were the species was originally described).
FIGURE 3 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 3. Liolaemus crandalli, holotype adult male in dorsal and ventral view (MLP.S 2631), from Auca Mahuida volcano type locality, Pehuenches Department, Neuquén, Argentina.
FIGURE 5 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 5. Map of northern Neuquén and southern Mendoza region showing the complex landscape of northwestern Patagonia. Arrow marks Liolaemus crandalli type locality. Small red circles mark L. crandalli collection/observed localities. Orange dotted line marks distributional limits of species related to the Liolaemus elongatus clade; question mark in Chachahuen Mountains are populations of uncertain phylogenetic placement. Yellow dotted line marks Auca Mahuida Volcanic Field boundaries. Main mountains ranges, cities, and roads are marked. Colorado River drainage is marked in blue. Inset: Region in South America.
FIGURE 1 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 1. Bayesian concatenated gene tree showing the topological position of Liolaemus crandalli with other members of the L. elongatus clade, and species of the L. petrophilus and L. kriegi clades. Numbers above nodes are posterior probability values, blue thick lines represent posterior probability values> 0.95.
FIGURE 2 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 2. Liolaemus crandalli (MLP.S 2631) adult male in dorsal and ventral view, from Auca Mahuida volcano type locality, Pehuenches Department, Neuquén province, Argentina.
FIGURE 4 in First record of the African-Indian centipede genus Digitipes Attems, 1930 (Scolopendromorpha: Otostigminae) from Myanmar, and the systematic position of a new species based on molecular phylogenetics
FIGURE 4. Maximum likelihood consensus tree based on combined COI and 16S sequences. Numbers at nodes are bootstrap support in maximum likelihood (ML) and posterior probabilities in Bayesian inference (BI). Black circles refer to nodes supported from both ML and BI; grey circle refers to a node supported only by ML.
FIGURE 3 in First record of the African-Indian centipede genus Digitipes Attems, 1930 (Scolopendromorpha: Otostigminae) from Myanmar, and the systematic position of a new species based on molecular phylogenetics
FIGURE 3. Drawings depicting variation in some morphological characters; A. Cephalic plate and T1 (Holotype). B. Forcipular segment (Holotype). C. Tooth-plate with five teeth on right side (Paratype; CUMZ 00234). D. Articles 1–3 of telopodite of second maxilla (Paratype; CUMZ 00241). E. Tergites 9–11 (Holotype). F. Sternite 10 (Paratype; CUMZ 00240). G. Coxopleural pore area (Holotype). H. Sternite of ultimate leg-bearing segment with ultimate legs (Holotype; ventral view). I. Left ultimate leg (Paratype; CUMZ 00234).
FIGURE 2 in First record of the African-Indian centipede genus Digitipes Attems, 1930 (Scolopendromorpha: Otostigminae) from Myanmar, and the systematic position of a new species based on molecular phylogenetics
FIGURE 2. Morphological characters of Digitipes kalewaensis n. sp.; A. Forcipular coxosternite (Paratype; CUMZ 00234). B- C. Tergites and sternites 9–11 (Paratype; CUMZ 00241). D. Antenna, cephalic plate and T1 (Holotype). E-G. Spiracles 3, 5 and 8, respectively (Holotype). H, J. Ultimate legs (Paratypes; CUMZ 00234-00235). I. Projection on femur of ultimate leg in male (Holotype). K. Pore-field of coxopleuron (left and right; Paratype; CUMZ 00235). L-M. Ventral and dorsal view of ultimate leg-bearing segment (Paratype; CUMZ 00234).
FIGURE 1 in First record of the African-Indian centipede genus Digitipes Attems, 1930 (Scolopendromorpha: Otostigminae) from Myanmar, and the systematic position of a new species based on molecular phylogenetics
FIGURE 1. Collecting area of Digitipes kalewaensis n. sp.; A. Location of collection area in Myanmar. B. Collecting locality (expanded magnification). C. Habitat type.
Aligned DNA sequence matrix for phylogenetic analyses in the article "Molecular and Morphological Assessment of Rain Frogs in the Pristimantis orestes Species Group (Amphibia: Anura: Strabomantidae) with the Description of Three New Cryptic Species from Southern Ecuador"
<p>The aligned matrix is in fasta format. Genes are arranged as follows:</p> <p>12S = 1–901</p> <p>16S = 902–2094</p> <p>RAG-1 = 2095–2733</p>
FIGURE 3 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 3. Phylogenetic tree for Aconurella based on mitochondrial COI haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 2 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 2. Bayesian consensus phylogenetic tree for Aconurella based on three-gene data set (COI, 16S and ITS2). Numbers on the node represents the posterior probabilities. The right vertical bars indicate the putative species using BPP. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 5 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 5. Phylogenetic tree for Aconurella based on mitochondrial ITS2 haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 4 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 4. Phylogenetic tree for Aconurella based on mitochondrial 16S haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
Figure 5 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 5. Live specimens of Cyrtodactylus ngopensis sp. nov.: (a) holotype, MZMU2553; (b) paratype, MZMU2552; (c) paratype, MZMU2554; (d) paratype, MZMU2555; (e) paratype, MZMU2556; (f) uncollected individual.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.