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122
datasets available to search
ShareScore release 0.9.0
Dataset results
122 results for “3d genome organization”
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms [RNA-seq]
GEO Series GSE234276. Drosophila melanogaster. 7 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization in the epithelial-mesenchymal transition spectrum [scHi-C_PEO1HEYA8]
GEO Series GSE201917. Homo sapiens. 24 samples. Type: Other.
3D genome organization in the epithelial-mesenchymal transition spectrum [Hi-C]
GEO Series GSE201878. Homo sapiens. 4 samples. Type: Other.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [Cut&Tag]
GEO Series GSE273972. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons
GEO Series GSE222609. Mus musculus. 34 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms[FAIRE-seq]
GEO Series GSE236965. Drosophila melanogaster. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [ChIRP_seq]
GEO Series GSE244949. Mus musculus. 2 samples. Type: Other.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [ChIA-PET]
GEO Series GSE143721. Oryza sativa. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_ATAC]
GEO Series GSE228917. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The role of the 3D genome organization on platinum drug induced DNA damage susceptibility
GEO Series GSE267578. Homo sapiens. 15 samples. Type: Other.
Deciphering the role of 3D genome organization in breast cancer susceptibility
GEO Series GSE184285. Rattus norvegicus. 19 samples. Type: Expression profiling by high throughput sequencing; Other.
Nuclear speckles as a key regulator for the 3D genome organization [HiC]
GEO Series GSE131463. Mus musculus. 4 samples. Type: Other.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [ChIP-Seq]
GEO Series GSE213226. Oryza sativa Indica Group. 37 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms.
GEO Series GSE234277. Drosophila melanogaster. 72 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Anti-cancer drugs curaxins target the 3D genome organization
GEO Series GSE122463. Homo sapiens. 12 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
The 3D genomics of lampbrush chromosomes highlights the role of active transcription in chromatin organization [scHi-C]
GEO Series GSE288409. Gallus gallus. 25 samples. Type: Other.
3D genome organization in the epithelial-mesenchymal transition spectrum
GEO Series GSE201919. Homo sapiens. 37 samples. Type: Other.
Elementary 3D organization of active and silenced E. coli genome
GEO Series GSE272161. Escherichia coli. 62 samples. Type: Other; Expression profiling by high throughput sequencing.
Anti-cancer drugs curaxins target the 3D genome organization [HiC]
GEO Series GSE117582. Homo sapiens. 4 samples. Type: Other.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [bulkRNAseq_ATACseq_CUT_Tag]
GEO Series GSE274542. Mus musculus. 41 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.