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ShareScore release 0.9.0
Dataset results
99 results for “Antimicrobial peptides”
Relish-mediated lncRNA-CR33942 facilitates Drosophila Imd immune responses and promotes antimicrobial peptide expression via interacting with Relish
GEO Series GSE198991. Drosophila melanogaster. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Human dermal endothelial cells co-treated with dsRNA mimic poly IC and antimicrobial peptide LL-37
GEO Series GSE129152. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Discovery of antimicrobial peptides targeting Acinetobacter baumannii via a pre-trained and fine-tuned few-shot learning-based pipeline
GEO Series GSE306268. Acinetobacter baumannii. 6 samples. Type: Expression profiling by high throughput sequencing.
Antimicrobial peptides modulate long-term memory
GEO Series GSE113347. Drosophila melanogaster. 63 samples. Type: Expression profiling by high throughput sequencing.
Development of gene expression signatures for the HDF and MDA-MB-231 cells that received TP4 (a cationic antimicrobial peptide) treatment
GEO Series GSE74764. Homo sapiens. 8 samples. Type: Expression profiling by array.
The antimicrobial peptide-sensing system aps of Staphylococcus aureus
GEO Series GSE8400. Chlamydia pneumoniae AR39; Borreliella burgdorferi B31; Coxiella burnetii RSA 493; Coxiella burnetii; Chlamydia trachomatis D/UW-3/CX; Staphylococcus epidermidis ATCC 12228; Staphylococcus aureus subsp. aureus MW2; Granulibacter bethesdensis; Rickettsia rickettsii; Staphylococcus aureus; Chlamydia muridarum; Staphylococcus epidermidis RP62A; Chlamydia caviae GPIC; Staphylococcus haemolyticus JCSC1435. 12 samples. Type: Expression profiling by array.
Next-Generation Antimicrobial Discovery through Bacterial Self-Screening of Surface-Displayed Peptide Libraries
GEO Series GSE94531. Escherichia coli str. K-12 substr. W3110. 12 samples. Type: Other.
Next-Generation Antimicrobial Discovery through Bacterial Self-Screening of Surface-Displayed Peptide Libraries [MiSeq]
GEO Series GSE94530. Escherichia coli str. K-12 substr. W3110. 8 samples. Type: Other.
A Gram-positive three-component antimicrobial peptide-sensing system
GEO Series GSE7163. Staphylococcus epidermidis; Staphylococcus epidermidis ATCC 12228; Staphylococcus aureus subsp. aureus MW2; Granulibacter bethesdensis; Chlamydia pneumoniae AR39; Borreliella burgdorferi B31; Coxiella burnetii RSA 493; Coxiella burnetii; Chlamydia trachomatis D/UW-3/CX; Rickettsia rickettsii; Chlamydia muridarum; Staphylococcus epidermidis RP62A; Chlamydia caviae GPIC; Staphylococcus haemolyticus JCSC1435. 30 samples. Type: Expression profiling by array.
Liver-expressed antimicrobial peptide-2 is downregulated in Eimeria maxima-infected chickens
GEO Series GSE25588. Gallus gallus. 16 samples. Type: Expression profiling by array.
Genome-wide effects of the antimicrobial peptide apidaecin on translation termination
GEO Series GSE150034. Escherichia coli. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Transcriptome analysis of bacteria challenged with antimicrobial peptides of plant origin
GEO Series GSE47447. Sinorhizobium meliloti 1021. 6 samples. Type: Expression profiling by high throughput sequencing.
Orai1 in pancreatic ductal cells mediates pancreas-intestinal crosstalk in experimental acute pancreatitis via the secretion of antimicrobial peptide REG3B in pancreatic juice
GEO Series GSE285771. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
A single genetic locus senses and protects the beneficial oral bacterium Streptococcus sp. A12 from a spectrum of antimicrobial peptides
GEO Series GSE156714. Streptococcus sp. A12. 9 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of Pseudomonas aeruginosa in response to host antimicrobial peptide S100A12
GEO Series GSE192463. Pseudomonas aeruginosa PAO1. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome response of Pseudomonas aeruginosa PA14 to antimicrobial peptides
GEO Series GSE139257. Pseudomonas aeruginosa PA14. 12 samples. Type: Expression profiling by high throughput sequencing.
Effect of antimicrobial peptide PR-39 on the gene expression of porcine intestinal epithelial cell line (IPEC-J2)
GEO Series GSE58876. Sus scrofa. 6 samples. Type: Expression profiling by array.
The deubiquitinase OTUD4 inhibits the expression of antimicrobial peptides in Paneth cells to support intestinal inflammation and bacterial infection
GEO Series GSE222836. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Bacteria-Specific Features Selection for Enhanced Antimicrobial Peptide Activity Predictions Using Machine-Learning Methods
<p>We developed a new computational approach that allowed us to train several supervised machine-learning models using a specific set of data associated with peptides targeting E. coli bacteria. LASSO regression and Support Vector Machine techniques have been utilized to select, among more than 1500 physio-chemical descriptors, the most important features that can be used to classify a peptide as antimicrobial or ineffective against E. coli. We then performed the classification of active versus inactive AMPs using the Support Vector classifiers, Logistic Regression, and Random Forest methods. This computational study allows us to make recommendations of how to design more efficient anti-bacterial drug therapies.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.