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◂Fig. 5 Gametogenesis in male and female Veneriserva pygoclava. A–D Semi-thin histological sections of female Veneriserva pygoclava, stained with toluidine blue. A Cross-section of a female Veneriserva. B Close-up of large mature oocytes without discernible nurse cells. C Developing oocytes attached to mesenteries (mes), and oogonia proliferating from the ventral side of the dorsal blood vessel (bv). D Details of vitellogenic oocytes and nurse cells. Arrowheads indicate brownstained yolk platelets and yolk bodies. E Live sperm cells captured in a light micrograph. F–G Cross-sections of male Veneriserva. Note the absence of a gut in the cross-sections. Abbreviations—ac acicula, acr acrosome, bv blood vessel, coe coelomic cavity, mes mesentery, nc nurse cell, nn nurse cell nucleus, nu sperm cell nucleus, Oo oocyte, on oocyte nucleus, sp spermatogonia, vnc ventral nerve cord in Hardly Venus's servant-morphological adaptations of Veneriserva to an endoparasitic lifestyle and its phylogenetic position within Dorvilleidae (Annelida)
◂Fig. 5 Gametogenesis in male and female Veneriserva pygoclava. A–D Semi-thin histological sections of female Veneriserva pygoclava, stained with toluidine blue. A Cross-section of a female Veneriserva. B Close-up of large mature oocytes without discernible nurse cells. C Developing oocytes attached to mesenteries (mes), and oogonia proliferating from the ventral side of the dorsal blood vessel (bv). D Details of vitellogenic oocytes and nurse cells. Arrowheads indicate brownstained yolk platelets and yolk bodies. E Live sperm cells captured in a light micrograph. F–G Cross-sections of male Veneriserva. Note the absence of a gut in the cross-sections. Abbreviations—ac acicula, acr acrosome, bv blood vessel, coe coelomic cavity, mes mesentery, nc nurse cell, nn nurse cell nucleus, nu sperm cell nucleus, Oo oocyte, on oocyte nucleus, sp spermatogonia, vnc ventral nerve cord
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV
Individual allotype responses to HEK-293T-based cell lines ex-pressing single MHC class I chain-related gene B alleles
<p><span>Figure S1.</span><span> Individual allotype responses between 64 sera collected from kidney transplant patients and 5 single </span><span>MICB</span><span> allele-expressing cell lines established in </span><span>HLA</span><span> class I, </span><span>MICA,</span><span> and </span><span>MICB</span><span>-null HEK-293T cells. </span><span>HLA</span><span> class I, </span><span>MICA,</span><span> and </span><span>MICB</span><span> genes were removed using CRISPR/Cas9 in previous studies [20, 21]. Some of the 64 sera showed responses to single </span><span>MICA</span><span> allele-expressing cell lines [21]. However, none of the 64 sera showed individual allotype responses in this study.</span></p>
Vaccination B cell dataset antibodies (DDW lab)
<p>The present vaccination dataset, obtained by the group of Deborah Dunn-Walters in 2012 ("vaccination") contains B cell repertoire data of six young (aged 19-45) and six elderly (aged 70-89) healthy volunteers. Three samples per donor have been taken: The first prior to vaccination (with Influvac and Pneumovax II) called "Day 0", the next seven days later ("Day 7") and the last one 28 days after vaccination ("Day 28"). This allows for a time-resolved monitoring of the immune response for the two different age groups. In total, the data set (as downloaded) contains 45784 observations.</p>
Wings: 68, Loew system for wing cells (Mydas lividus Curran); 69, Comstock Needham system for wing veins tNernomouiae pantherinus Gerstaecker); 70, Apiophora paulseni Philippi, a: open 2nd submarginal cell; b: reduced size of axillary lobe; 71., Mitrodetus sp.; 72 Pseudonomoneura sp. in The American Genera of Mydidae (Diptera), with the Description of three new Genera and two new Species
Wings: 68, Loew system for wing cells (Mydas lividus Curran); 69, Comstock Needham system for wing veins tNernomouiae pantherinus Gerstaecker); 70, Apiophora paulseni Philippi, a: open 2nd submarginal cell; b: reduced size of axillary lobe; 71., Mitrodetus sp.; 72 Pseudonomoneura sp.
Fig. 7. T. thermophila cells immunostained with the antiserum against component B in Effects of Roscovitine on Schedule of Divisional Morphogenesis, Basal Bodies Proliferation and Cell Divisions in Tetrahymena thermophila
Fig. 7. T. thermophila cells immunostained with the antiserum against component B of epiplasm. DF – staining around the deep fibers. Other explanations as in Fig. 1. Bar: 10 µm.
Simulation data for "Phylogenetic analysis of migration, differentiation, and class switching in B cells"
<p>Simulation data for https://doi.org/10.1101/2020.05.30.124446.</p> <p>Scripts available at: https://bitbucket.org/kleinstein/projects/src/master/Hoehn2020/</p> <p>data_twostate.tsv: AIRR TSV file of data used for simulations</p> <p>trees_twostate.RData: Tree topologies used to simulate migration</p> <p>simulations.tar.gz: Files used in simulation analyses. File names show:</p> <p><rate (r)>_<rate A to B (r_ab)>_<pi_A>_<repetition></p> <p>laddersims.tar.gz: Files used in ladder tree simulation analyses. File names show:</p> <p><rate (r)>_<rate A to B (r_ab)>_<pi_A>_<number of tips>_<number of trees>_<repetition></p> <p> </p>
Text-fig. 3. Scanning electron micrographs (a, b) and synchrotron radiation X-ray tomographic microscopy orthoslices (c–e) of flower of Lambertiflora elegans gen. et sp. nov. from the Early Cretaceous Puddledock locality, Virginia, USA (holotype, PP53796, Puddledock sample 082). a) Flower in lateral view showing long pedicel and overlapping elongated tepals; b) Detail of flower showing overlapping elongated tepals; note the numerous holes indicating the position of probable secretory cells; c) Flower in longitudinal section showing overlapping elongated tepals, remains of probable poorly developed stamens or staminodes and probable poorly developed carpels on the central conical gynoecial region of the receptacle (cut between orthoslices xz0510 and 0570); d) Flower in longitudinal section (comparable to c) showing overlapping tepals, poorly developed stamens or staminodes, and probable poorly developed carpels on the central conical gynoecial region of the receptacle; note the prominent cavities from secretory cells scattered through the tissues (cut between orthoslice xz0560 and 0575); e) Flower in transverse section showing overlapping tepals, poorly developed stamens or staminodes, and remains of probable poorly developed carpels (cut between orthoslices xy1160 and 1180). Scale bars = 1 mm (a), 500 µm (b–e). in Multiparted, Apocarpous Flowers From The Early Cretaceous Of Eastern North America And Portugal
Text-fig. 3. Scanning electron micrographs (a, b) and synchrotron radiation X-ray tomographic microscopy orthoslices (c–e) of flower of Lambertiflora elegans gen. et sp. nov. from the Early Cretaceous Puddledock locality, Virginia, USA (holotype, PP53796, Puddledock sample 082). a) Flower in lateral view showing long pedicel and overlapping elongated tepals; b) Detail of flower showing overlapping elongated tepals; note the numerous holes indicating the position of probable secretory cells; c) Flower in longitudinal section showing overlapping elongated tepals, remains of probable poorly developed stamens or staminodes and probable poorly developed carpels on the central conical gynoecial region of the receptacle (cut between orthoslices xz0510 and 0570); d) Flower in longitudinal section (comparable to c) showing overlapping tepals, poorly developed stamens or staminodes, and probable poorly developed carpels on the central conical gynoecial region of the receptacle; note the prominent cavities from secretory cells scattered through the tissues (cut between orthoslice xz0560 and 0575); e) Flower in transverse section showing overlapping tepals, poorly developed stamens or staminodes, and remains of probable poorly developed carpels (cut between orthoslices xy1160 and 1180). Scale bars = 1 mm (a), 500 µm (b–e).
Text-fig. 54. Scanning electron microscope (SEM; a–e, g, h) and synchrotron x-ray microscopy (SRXTM; f, i) images of unnamed angiosperm fruits and seeds; Torres Vedras locality, Portugal. a) Follicle sp. 1, narrow elongate follicle with sessile and decurrent stigma; b) Follicle sp. 2, broad, dehisced follicle with elongate and transverse fibers lining the locule; c) Angiosperm seed sp. 1 with thin, smooth seed coat; d) Angiosperm seed sp. 2 with verrucate seed coat; e) Angiosperm seed sp. 3 with exotestal and foveolate seed coat; f) Angiosperm seed sp. 4 with smooth seed coat; g, h) Angiosperm seed sp. 5 with raised epidermal cells forming a reticulate pattern; i) Wedge-shaped angiosperm fruit with remains of floral parts near apex. Specimens, TV43-S136726 (a), TV44-S148144 (b), TV43-S170074 (c), TV43-S136747 (d), TV43-S170073 (e), TV38-S174615 (f), TV44-S148003 (g), TV44-S148004 (h), TV43-S174685 (i). Scale bars 300 Μm (a–i). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 54. Scanning electron microscope (SEM; a–e, g, h) and synchrotron x-ray microscopy (SRXTM; f, i) images of unnamed angiosperm fruits and seeds; Torres Vedras locality, Portugal. a) Follicle sp. 1, narrow elongate follicle with sessile and decurrent stigma; b) Follicle sp. 2, broad, dehisced follicle with elongate and transverse fibers lining the locule; c) Angiosperm seed sp. 1 with thin, smooth seed coat; d) Angiosperm seed sp. 2 with verrucate seed coat; e) Angiosperm seed sp. 3 with exotestal and foveolate seed coat; f) Angiosperm seed sp. 4 with smooth seed coat; g, h) Angiosperm seed sp. 5 with raised epidermal cells forming a reticulate pattern; i) Wedge-shaped angiosperm fruit with remains of floral parts near apex. Specimens, TV43-S136726 (a), TV44-S148144 (b), TV43-S170074 (c), TV43-S136747 (d), TV43-S170073 (e), TV38-S174615 (f), TV44-S148003 (g), TV44-S148004 (h), TV43-S174685 (i). Scale bars 300 Μm (a–i).
Text-fig. 50. Scanning electron microscope (SEM) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images of a flower and mature carpels of Reyanthus lusitanicus gen. et sp. nov.; Torres Vedras locality, Portugal. a) Holotype; multicarpellate flower showing numerous carpels surrounded by remains of the androecium and perianth; note the bract subtending the flower (arrowhead); b, c) Longitudinal sections perpendicular to section in (f) (b, SRXTM orthoslice xz0461) and (c, SRXTM cut voltex xz0540-0580) showing receptacle, carpels and remains of the androecium and perianth; note prominent cavities formed by the oil cells, subtending bract (arrow) and bract subtending fragmentary bud (arrowhead); d, e) Apical (d) and lateral (e) views of gynoecium showing laterally flattened carpels and dorsi-ventrally flattened stamen or staminode (* in e); f) Longitudinal section (SRXTM orthoslice yz0405) of gynoecium showing conical receptacle and carpels with densely spaced oil cells; g, h) Mature carpel of Reyanthus lusitanicus gen. et sp. nov. showing slightly curved form, rounded apex and base that tapers toward the attachment to the receptacle; i) Surface of carpel showing embedded oil cells; j) Transverse section through three carpels showing attachment of developing ovules near the ventral sutures and oil cells in the wall just below the surface (SRXTM cut voltex xy0770-0845). Specimens TV299-S136716 (holotype; a–f), TV299-S136717 (g–j). Scale bars 300 Μm (a–d, f–h), 150 Μm (e, j), 30 Μm (i). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 50. Scanning electron microscope (SEM) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images of a flower and mature carpels of Reyanthus lusitanicus gen. et sp. nov.; Torres Vedras locality, Portugal. a) Holotype; multicarpellate flower showing numerous carpels surrounded by remains of the androecium and perianth; note the bract subtending the flower (arrowhead); b, c) Longitudinal sections perpendicular to section in (f) (b, SRXTM orthoslice xz0461) and (c, SRXTM cut voltex xz0540-0580) showing receptacle, carpels and remains of the androecium and perianth; note prominent cavities formed by the oil cells, subtending bract (arrow) and bract subtending fragmentary bud (arrowhead); d, e) Apical (d) and lateral (e) views of gynoecium showing laterally flattened carpels and dorsi-ventrally flattened stamen or staminode (* in e); f) Longitudinal section (SRXTM orthoslice yz0405) of gynoecium showing conical receptacle and carpels with densely spaced oil cells; g, h) Mature carpel of Reyanthus lusitanicus gen. et sp. nov. showing slightly curved form, rounded apex and base that tapers toward the attachment to the receptacle; i) Surface of carpel showing embedded oil cells; j) Transverse section through three carpels showing attachment of developing ovules near the ventral sutures and oil cells in the wall just below the surface (SRXTM cut voltex xy0770-0845). Specimens TV299-S136716 (holotype; a–f), TV299-S136717 (g–j). Scale bars 300 Μm (a–d, f–h), 150 Μm (e, j), 30 Μm (i).
Text-fig. 24. Scanning electron microscope (SEM) images (a, c, d) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images (b, e) of fruits and seeds of Serialis antiqua (a, b) and Serialis parva (c–e); Torres Vedras locality, Portugal. a, b) Serialis antiqua lateral view of fruit showing smooth partly abraded fruit wall (a) and longitudinal section (b, SRXTM orthoslice yz0862) showing six closely adhering seeds, some of which are mature with well-preserved nutritive tissue; c–e) Serialis parva lateral view of fruit showing faint ribs (c), finely pitted seed surface with undulate anticlinal walls of the exotestal cells (d), and transverse section showing two closely adhering seeds (SRXTM orthoslice xy0913, e). Specimens, TV43-S174480 (a, b), TV43-S170076 (c), TV43-S170079 (d), TV43-S174477 (e). Scale bars 300 Μm (a–c, e), 50 Μm (d). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 24. Scanning electron microscope (SEM) images (a, c, d) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images (b, e) of fruits and seeds of Serialis antiqua (a, b) and Serialis parva (c–e); Torres Vedras locality, Portugal. a, b) Serialis antiqua lateral view of fruit showing smooth partly abraded fruit wall (a) and longitudinal section (b, SRXTM orthoslice yz0862) showing six closely adhering seeds, some of which are mature with well-preserved nutritive tissue; c–e) Serialis parva lateral view of fruit showing faint ribs (c), finely pitted seed surface with undulate anticlinal walls of the exotestal cells (d), and transverse section showing two closely adhering seeds (SRXTM orthoslice xy0913, e). Specimens, TV43-S174480 (a, b), TV43-S170076 (c), TV43-S170079 (d), TV43-S174477 (e). Scale bars 300 Μm (a–c, e), 50 Μm (d).
Text-fig. 16. Scanning electron microscope (SEM) images of seeds of possible Nymphaeales-Austrobaileyales affinity; Torres Vedras locality, Portugal. a, b) Nymphaeales-Austrobaileyales seed sp. 1, seed in lateral view (a) showing smooth surface of the exotesta composed of cells with shallowly sinuous cell outlines (b); c, d) Nymphaeales-Austrobaileyales seed sp. 2, fragmentary seed in lateral view (c) showing surface of exotesta composed of cells with deeply sinuous cell outlines (d); e, f) Nymphaeales-Austrobaileyales seed sp. 3, seed in lateral view (e) showing detail of smooth surface of the exotesta composed of cells with sinuous cell outlines (f). Specimens, TV43-S136741 (a, b), TV43-S148142 (c, d), TV43-S170087 (e, f). Scale bars 300 Μm (a, c, e), 30 Μm (b, d, f). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 16. Scanning electron microscope (SEM) images of seeds of possible Nymphaeales-Austrobaileyales affinity; Torres Vedras locality, Portugal. a, b) Nymphaeales-Austrobaileyales seed sp. 1, seed in lateral view (a) showing smooth surface of the exotesta composed of cells with shallowly sinuous cell outlines (b); c, d) Nymphaeales-Austrobaileyales seed sp. 2, fragmentary seed in lateral view (c) showing surface of exotesta composed of cells with deeply sinuous cell outlines (d); e, f) Nymphaeales-Austrobaileyales seed sp. 3, seed in lateral view (e) showing detail of smooth surface of the exotesta composed of cells with sinuous cell outlines (f). Specimens, TV43-S136741 (a, b), TV43-S148142 (c, d), TV43-S170087 (e, f). Scale bars 300 Μm (a, c, e), 30 Μm (b, d, f).
Text-fig. 3. Scanning electron microscope (SEM) images of a charalean oospore (a), and fragments of probable marchantialean liverwort thalli (b–d); Torres Vedras locality, Portugal. a) Apical view of oospore showing the pattern of spiral ridges and grooves resulting from the enclosing cells of the oogonium. b–d) Thallus fragments in probable ventral view showing two rows of imbricate scales and occasional branching of the thallus (d). Specimens, TV38-S174607 (a), TV43-S174655 (b), TV43-S174654 (c), TV43-S174661 (d). Scale bars 1 mm (b–d), 100 Μm (a). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 3. Scanning electron microscope (SEM) images of a charalean oospore (a), and fragments of probable marchantialean liverwort thalli (b–d); Torres Vedras locality, Portugal. a) Apical view of oospore showing the pattern of spiral ridges and grooves resulting from the enclosing cells of the oogonium. b–d) Thallus fragments in probable ventral view showing two rows of imbricate scales and occasional branching of the thallus (d). Specimens, TV38-S174607 (a), TV43-S174655 (b), TV43-S174654 (c), TV43-S174661 (d). Scale bars 1 mm (b–d), 100 Μm (a).
Text-fig. 18. Scanning electron microscope (SEM) images of a fruit of Canrightia sp. with associated pollen; Torres Vedras locality, Portugal. a) Fruit in lateral view showing prominent cavities in the fruit wall formed by the scattered oil bodies and the broad hypanthium fused to the base of the fruit (arrowhead); b) Fruit surface showing epidermal cells and the scattered oil cells embedded in the fruit wall (arrowheads); c) Cluster of monocolpate pollen grains in the probable stigmatic region of the fruit; d) Pollen grains showing the long colpus and semitectate-reticulate pollen wall; e) Pollen wall showing the reticulum with large and small lumina, and scattered, compressed columellae supporting the smooth muri. Specimen, TV142-S170213. Scale bars 300 Μm (a), 100 Μm (b), 30 Μm (c), 6 Μm (d), 1 Μm (e). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 18. Scanning electron microscope (SEM) images of a fruit of Canrightia sp. with associated pollen; Torres Vedras locality, Portugal. a) Fruit in lateral view showing prominent cavities in the fruit wall formed by the scattered oil bodies and the broad hypanthium fused to the base of the fruit (arrowhead); b) Fruit surface showing epidermal cells and the scattered oil cells embedded in the fruit wall (arrowheads); c) Cluster of monocolpate pollen grains in the probable stigmatic region of the fruit; d) Pollen grains showing the long colpus and semitectate-reticulate pollen wall; e) Pollen wall showing the reticulum with large and small lumina, and scattered, compressed columellae supporting the smooth muri. Specimen, TV142-S170213. Scale bars 300 Μm (a), 100 Μm (b), 30 Μm (c), 6 Μm (d), 1 Μm (e).
Text-fig. 15. Scanning electron microscope (SEM) images of seeds of Pazliopsis reyi (a–c) and Anaspermum operculatum gen. et sp. nov. (d–j). a) Seed in lateral view showing poorly preserved remains of fruit wall and rough surface of the exotesta; b) Section through the wall of a broken seed showing palisade cells of the exotesta; c) Seed surface showing sunken very deeply sinuous outlines of the exotesta cells; d–f, h, i) Seeds in lateral view (holotype figured in d) showing the pointed micropylar-hilar area, the rounded chalazal end, the smooth surface of the exotesta composed of cells with sinuous cell outlines, and the distinct course of the raphe; g) Surface of the exotesta showing the distinctive cell outlines formed by the sinuous anticlinal walls of the palisade cells; j) Apical view of seed showing the prominent operculum. Specimens, TV43-S171534 (a), TV44-S136683 (b), TV43-S136745 (c), TV43-S136740 (holotype; d), TV43-S136746 (e), TV43-S136739 (f), TV43-S170083 (g), TV S136743 (h), TV43-S136742 (i), TV38-S174608 (j). Scale bars 300 Μm (a, b, d–f, h, i), 50 Μm (j), 30 Μm (c, g). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 15. Scanning electron microscope (SEM) images of seeds of Pazliopsis reyi (a–c) and Anaspermum operculatum gen. et sp. nov. (d–j). a) Seed in lateral view showing poorly preserved remains of fruit wall and rough surface of the exotesta; b) Section through the wall of a broken seed showing palisade cells of the exotesta; c) Seed surface showing sunken very deeply sinuous outlines of the exotesta cells; d–f, h, i) Seeds in lateral view (holotype figured in d) showing the pointed micropylar-hilar area, the rounded chalazal end, the smooth surface of the exotesta composed of cells with sinuous cell outlines, and the distinct course of the raphe; g) Surface of the exotesta showing the distinctive cell outlines formed by the sinuous anticlinal walls of the palisade cells; j) Apical view of seed showing the prominent operculum. Specimens, TV43-S171534 (a), TV44-S136683 (b), TV43-S136745 (c), TV43-S136740 (holotype; d), TV43-S136746 (e), TV43-S136739 (f), TV43-S170083 (g), TV S136743 (h), TV43-S136742 (i), TV38-S174608 (j). Scale bars 300 Μm (a, b, d–f, h, i), 50 Μm (j), 30 Μm (c, g).
Text-fig. 14. Scanning electron microscope (SEM) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images of seeds of Gastonispermum antiquum sp. nov. (a–e) and possible fruits (f–h); Torres Vedras locality, Portugal. a–c) Lateral view of seeds (holotype figured in b) showing the hilar-micropylar area and the course of the raphe; note the close association of hilum (arrowhead) and micropyle; d) Detail of seed wall showing the undulating surface of the exotesta composed of cells with sinuous cell outlines; e) Longitudinal section (orthoslice xy0914) through the hilar-micropylar area showing the hilum (arrowhead), the thickening of the endotesta around the micropyle and the course of the raphe within the exotesta (arrow); f–h) Fruits containing in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 14. Scanning electron microscope (SEM) and synchrotron radiation X-ray tomographic microscopy (SRXTM) images of seeds of Gastonispermum antiquum sp. nov. (a–e) and possible fruits (f–h); Torres Vedras locality, Portugal. a–c) Lateral view of seeds (holotype figured in b) showing the hilar-micropylar area and the course of the raphe; note the close association of hilum (arrowhead) and micropyle; d) Detail of seed wall showing the undulating surface of the exotesta composed of cells with sinuous cell outlines; e) Longitudinal section (orthoslice xy0914) through the hilar-micropylar area showing the hilum (arrowhead), the thickening of the endotesta around the micropyle and the course of the raphe within the exotesta (arrow); f–h) Fruits containing
Text-fig. 13. Scanning electron microscope (SEM) images of pollen or spore clump with pollen grains or spores of unknown affinity that occur separately or adhering together in dyads, triads and tetrads; Torres Vedras locality, Portugal. a) Clump of pollen or spores that yielded the pollen or spores in this Text-figure; b–f) Grains adhering together in twos, threes or fours (b–e) or occurring singly and apparently with a proximal trilete mark (f); note that the adhering grains are connected by a smooth bandlike covering, perhaps remains of the microspore mother cell; note also abundant orbicules of various sizes among and over the grains. Specimen, TV44-S148149. Scale bars 300 Μm (a), 30 Μm (b–f). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 13. Scanning electron microscope (SEM) images of pollen or spore clump with pollen grains or spores of unknown affinity that occur separately or adhering together in dyads, triads and tetrads; Torres Vedras locality, Portugal. a) Clump of pollen or spores that yielded the pollen or spores in this Text-figure; b–f) Grains adhering together in twos, threes or fours (b–e) or occurring singly and apparently with a proximal trilete mark (f); note that the adhering grains are connected by a smooth bandlike covering, perhaps remains of the microspore mother cell; note also abundant orbicules of various sizes among and over the grains. Specimen, TV44-S148149. Scale bars 300 Μm (a), 30 Μm (b–f).
Text-fig. 5. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Holotype (S174178; Vale de Agua sample 141) in lateral view showing shape and cell pattern; remains of mounting media (¤). b) Cut volume rendering of seed (cut at yz0553) showing the slightly raised tissue immediately adjacent to the lower edge of the hilum (arrow head) and palisade-shaped cells of exotesta. c) Apical view of seed showing hilar depression (hi), position of micropylar slit (mi) and the slightly raised raphal ridge (ra). d) Seed in lateral view showing raised tissue immediately adjacent to the lower edge of the hilum (arrow head) (S174495, Vale de Água sample 300). e) Cut volume rendering (cut at yz0500) of the seed in (5d) showing the raised tissue (arrow head) immediately adjacent to the lower edge of the hilum and sclerenchyma cells of exotesta. f) Detail of seed in (5d) showing micropylar slit (mi), hilum (hi) and raised tissue (arrow head) immediately adjacent to the lower edge of the hilum. g, h) Seed in lateral view (g) and view towards raphe (h) showing seed shape, the raised tissue below hilum (arrow head) and the raphal ridge (ra); note pointed micropylar area (S174179, Vale de Água sample 141). i) Seed surface of seed in (5d) showing the raised outlines of the undulate anticlinal walls of the exotestal cells. Scale bars = 250 µm (a–e, g, h); 125 µm (f, i). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 5. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Holotype (S174178; Vale de Agua sample 141) in lateral view showing shape and cell pattern; remains of mounting media (¤). b) Cut volume rendering of seed (cut at yz0553) showing the slightly raised tissue immediately adjacent to the lower edge of the hilum (arrow head) and palisade-shaped cells of exotesta. c) Apical view of seed showing hilar depression (hi), position of micropylar slit (mi) and the slightly raised raphal ridge (ra). d) Seed in lateral view showing raised tissue immediately adjacent to the lower edge of the hilum (arrow head) (S174495, Vale de Água sample 300). e) Cut volume rendering (cut at yz0500) of the seed in (5d) showing the raised tissue (arrow head) immediately adjacent to the lower edge of the hilum and sclerenchyma cells of exotesta. f) Detail of seed in (5d) showing micropylar slit (mi), hilum (hi) and raised tissue (arrow head) immediately adjacent to the lower edge of the hilum. g, h) Seed in lateral view (g) and view towards raphe (h) showing seed shape, the raised tissue below hilum (arrow head) and the raphal ridge (ra); note pointed micropylar area (S174179, Vale de Água sample 141). i) Seed surface of seed in (5d) showing the raised outlines of the undulate anticlinal walls of the exotestal cells. Scale bars = 250 µm (a–e, g, h); 125 µm (f, i).
Text-fig. 3. Pazlia hilaris gen. et sp. nov. (a–e) from the Early Cretaceous Famalicão locality (sample 025), Portugal (holotype, S175096) and Pazliopsis reyi gen. et sp. nov. (f–i) from the Early Cretaceous Torres Vedras locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings a–f, i) and scanning electron microscopy (SEM, g, h). a, b) Seed in lateral (a) and oblique apical (b) views showing the truncate hilar-micropylar region; note prominent hilar scar (hi) and micropyle (mi) at the seed apex and the raphe (ra) seen as slightly raised ridge; remains of mounting media (¤). c) Cut volume rendering (cut at yz0647) showing course of raphe (ra), hilar scar (hi) and micropyle (mi); note the strongly radially elongated cells below the hilar scar. d) Seed in antiraphal view. e) Seed surface showing the raised undulate anticlinal walls of the exotestal cells. f) Seed enclosed in remains of thin-walled fruit (fr) (S174632, Torres Vedras sample 298). g) Holotype, seed enclosed in remains of fruit (fr); raphal view showing the faintly ribbed surface of the seed (S171534, Torres Vedras sample 043). h) Apical view of seed fragment showing hilar scar (hi), position of raphe (ra) and the ribbed seed surface (S136683, Torres Vedras sample 044). i) Seed surface showing the raised undulate anticlinal walls of the exotestal cells (S171534; Torres Vedras sample 043). Scale bars = 250 µm (a–d, f–h); 125 µm (e, i). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 3. Pazlia hilaris gen. et sp. nov. (a–e) from the Early Cretaceous Famalicão locality (sample 025), Portugal (holotype, S175096) and Pazliopsis reyi gen. et sp. nov. (f–i) from the Early Cretaceous Torres Vedras locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings a–f, i) and scanning electron microscopy (SEM, g, h). a, b) Seed in lateral (a) and oblique apical (b) views showing the truncate hilar-micropylar region; note prominent hilar scar (hi) and micropyle (mi) at the seed apex and the raphe (ra) seen as slightly raised ridge; remains of mounting media (¤). c) Cut volume rendering (cut at yz0647) showing course of raphe (ra), hilar scar (hi) and micropyle (mi); note the strongly radially elongated cells below the hilar scar. d) Seed in antiraphal view. e) Seed surface showing the raised undulate anticlinal walls of the exotestal cells. f) Seed enclosed in remains of thin-walled fruit (fr) (S174632, Torres Vedras sample 298). g) Holotype, seed enclosed in remains of fruit (fr); raphal view showing the faintly ribbed surface of the seed (S171534, Torres Vedras sample 043). h) Apical view of seed fragment showing hilar scar (hi), position of raphe (ra) and the ribbed seed surface (S136683, Torres Vedras sample 044). i) Seed surface showing the raised undulate anticlinal walls of the exotestal cells (S171534; Torres Vedras sample 043). Scale bars = 250 µm (a–d, f–h); 125 µm (e, i).
Text-fig. 1. Gastonispermum portugallicum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). Note remains of mounting media on several seeds (¤). a) Seed in oblique view showing seed shape, the slightly raised raphal ridge and the position of hilum (hi) and micropyle (mi) on the raphal side of the seed (S170218). b, c) Seeds in lateral view (b, S170234; c, S175095). d–f) Holotype (S174820); seed in lateral view (d) and cut volume rendering (e, f) through the median plane of the seed showing palisade-shaped sclerenchyma cells of exotesta and remains of embryo (emb) and surrounding nutritive tissue (e, cut between yz0440-0530; f, cut between slices yz440-480). g) Hilum (hi) and micropyle (mi) of seed in (1a) showing the Y-shaped micropylar slit in the outer integument. h) Cut volume rendering through the median plane of the seed (cut at yz0492) showing seed coat mainly composed of palisade-shaped cells of the exotesta (S174435). i) Seed surface showing the raised outlines of the undulate anticlinal walls of the exotestal cells (S175045). Scale bars = 500 µm (a–e); 250 µm (g); 125 µm (f, i). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 1. Gastonispermum portugallicum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). Note remains of mounting media on several seeds (¤). a) Seed in oblique view showing seed shape, the slightly raised raphal ridge and the position of hilum (hi) and micropyle (mi) on the raphal side of the seed (S170218). b, c) Seeds in lateral view (b, S170234; c, S175095). d–f) Holotype (S174820); seed in lateral view (d) and cut volume rendering (e, f) through the median plane of the seed showing palisade-shaped sclerenchyma cells of exotesta and remains of embryo (emb) and surrounding nutritive tissue (e, cut between yz0440-0530; f, cut between slices yz440-480). g) Hilum (hi) and micropyle (mi) of seed in (1a) showing the Y-shaped micropylar slit in the outer integument. h) Cut volume rendering through the median plane of the seed (cut at yz0492) showing seed coat mainly composed of palisade-shaped cells of the exotesta (S174435). i) Seed surface showing the raised outlines of the undulate anticlinal walls of the exotestal cells (S175045). Scale bars = 500 µm (a–e); 250 µm (g); 125 µm (f, i).
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.