Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
A TGF- -CTCF regulated pathway suppresses stem cell associated tumor progression
GEO Series GSE69752. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
CTCF is dispensable for cell fate conversion but facilitates acute cellular responses
GEO Series GSE140528. Homo sapiens. 79 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
PAR-CLIP-seq reveals RNAs directly interacting with CTCF in human transformed cell line U2OS
GEO Series GSE53554. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
CTCF-RNA interactions orchestrate cell-specific chromatin loop organization [iCLIP2]
GEO Series GSE287380. Mus musculus. 23 samples. Type: Other.
CTCF promotes RNA pol II pausing and links DNA methylation to alternative splicing [ChIP-Seq]
GEO Series GSE31485. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq)
GEO Series GSE158416. Bos taurus; Sus scrofa; Gallus gallus. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Abnormal microglia and enhanced inflammation-related gene transcription in mice with conditional deletion of Ctcf in Camk2a-Cre-expressing neurons
GEO Series GSE108827. Mus musculus. 16 samples. Type: Expression profiling by array.
CTCF boundary remodels chromatin domain and drives aberrant HOX gene transcription in acute myeloid leukemia
GEO Series GSE113191. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions [RNA-seq]
GEO Series GSE85088. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [ATAC-Seq]
GEO Series GSE269216. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation
GEO Series GSE39523. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
GEO Series GSE56938. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Allele-specific H3K27me3, H3K27ac and Ctcf ChIP-seq in Smchd1 control and Smchd1 deleted female neural stem cells. [H3K27ac]
GEO Series GSE112046. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An ectopic CTCF binding element disturbs Vδ usage at the mouse Tcra-Tcrd locus by regulating contact between Vδ and Dδ gene segments
GEO Series GSE81351. Mus musculus. 12 samples. Type: Other.
X-chromosome dynamics revealed by the RNA interactome and chromosomal binding of CTCF
GEO Series GSE58242. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [RNA-seq]
GEO Series GSE263639. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [RNA-seq]
GEO Series GSE162101. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells
GEO Series GSE28247. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [cHi-C]
GEO Series GSE181386. Mus musculus. 16 samples. Type: Other.
Dynamic regulation of stress-responsive non-genomic CTCF complexes [ChIP-seq]
GEO Series GSE139882. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.