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200 results for “Genomic Resources”
Figure 5 in The first genomic resource for the 'near threatened' Neotropical otter Lontra longicaudis (Carnivora: Mustelidae): mitochondrial genome characterisation and insights into phylomitogenomic relationships in the family Mustelidae
Figure 5. Characteristics of the domains found in the D-Loop/CR of the Lontra longicaudis mitochondrial genome. Top: Features observed in all three well-conserved domains. Centre: Secondary structure of long tandem repeat observed in the CSB region, between CSB1 and CSB2. Bottom: D-Loop/CR sequence in which the different features have been highlighted with different colours.
Figure 1 in The first genomic resource for the 'near threatened' Neotropical otter Lontra longicaudis (Carnivora: Mustelidae): mitochondrial genome characterisation and insights into phylomitogenomic relationships in the family Mustelidae
Figure 1. Circular DNA mitochondrial genome map of Lontra longicaudis. The annotated map depicts 13 protein-coding genes (PCGs), two ribosomal RNA genes (rrnS: 12S ribosomal RNA and rrnL: 16S ribosomal RNA), 22 transfer RNA (tRNA) genes, and the putative control region. Photo credit: John Tomsett.
Figure 4 in The first genomic resource for the 'near threatened' Neotropical otter Lontra longicaudis (Carnivora: Mustelidae): mitochondrial genome characterisation and insights into phylomitogenomic relationships in the family Mustelidae
Figure 4. tRNAs in the mitochondrial genome of Lontra longicaudis usually display 'cloverleaf̍ secondary structures; however, in Serine 1 (tRNA-Ser(AGY) or trnS1), the DHU loop (3–4bp) was absent. The truncation of this tRNA is a conserved trait in metazoans.
Citrus genomic resources unravel putative genetic determinants of Huanglongbing pathogenicity
<p>Citrus HLB caused by Candidatus Liberibacter asiaticus is a pathogen-triggered</p> <p>immune disease. Here, we identified putative genetic determinants of HLB</p> <p>pathogenicity by integrating citrus genomic resources to characterize the pan</p> <p>genome of accessions that differ in their response to HLB. Genome-wide associ</p> <p>ation mapping and analysis of allele-specific expression between susceptible,</p> <p>tolerant, and resistant accessions further refined candidates underlying the</p> <p>response to HLB. We first developed a phased diploid assembly of Citrus sinensis</p> <p>‘Newhall’ genome and produced resequencing data for 91 citrus accessions that</p> <p>differ in their response to HLB. These data were combined with previous rese</p> <p>quencing data from 356 accessions for genome-wide association mapping of</p> <p>the HLB response. Genes determinants for HLB pathogenicity were associated</p> <p>with host immune response, ROS production, and antioxidants. Overall, this</p> <p>study has provided a significant resource of citrus genomic data and identified</p> <p>candidate genes to be further explored to understand the genetic determinants</p> <p>of HLB pathogenicity</p>
A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis)
<p>Understanding how genetic diversity is distributed across spatiotemporal scales in species of conservation or management concern is critical for identifying large-scale mechanisms affecting local conservation status and implementing large-scale biodiversity monitoring programs. However, cross-scale surveys of genetic diversity are often impractical within single studies, and combining datasets to increase spatiotemporal coverage is frequently impeded by using different sets of molecular markers. Recently developed molecular tools make surveys based on standardized SNP panels more feasible than ever but require existing genomic information. Here, we demonstrate the utility of genome-wide SNPs reflective of range-wide genetic diversity for surveying populations across the native species range. These data can be leveraged to design SNP panels that allow datasets to be combined for large-scale analyses. We develop this resource for brook trout (<em>Salvelinus fontinalis</em>). We performed restriction site-associated DNA sequencing for wild brook trout from 82 locations spanning much of the native range and domestic brook trout from 24 hatchery strains used in stocking efforts. We identified over 24,000 SNPs putatively representing neutral and adaptive regions of the brook trout genome. We explored the ability of these SNPs to resolve relationships across spatial scales, including population structure, hatchery admixture, and outlier loci. Our dataset captures a wide spectrum of genetic diversity in native brook trout, offering a valuable resource for developing SNP panels. We highlight potential applications of this resource with the goal of increasing the integration of genomic information into decision-making for brook trout and other species of conservation or management concern.</p>
Genomic Resources for Enhancing Available Therapies (GREAT1.0) Study
ClinicalTrials.gov study NCT04306939. IPD Sharing: NO. Countries: 1. Publications: 1.
Data from: "De novo transcriptome assembly of the mountain fly Drosophila nigrosparsa using short RNA-seq reads" in Genomic Resources Notes Accepted 1 August 2014-30 September 2014
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Data from: Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites
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Data from: Developing genomic resources for the common bottlenose dolphin (Tursiops truncatus): isolation and characterisation of 153 single nucleotide polymorphisms and 53 genotyping assays
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A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis)
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Data from: Genome-wide SNP discovery in the annual herb, Lasthenia fremontii (Asteraceae): genetic resources for the conservation and restoration of a California vernal pool endemic
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Data from: Whole genome sequence resource of Indian Zaprionus indianus
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Data from: Development of genomic resources for Nothofagus species using next-generation sequencing data
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Data from: "De novo transcriptome assembly and polymorphism detection in ecological important widely distributed Neotropical toads from the Rhinella marina species complex (Anura: Bufonidade)" in Genomic Resources Notes Accepted 1 August 2014-30 September 2014
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Data from: "Identification of SNP markers for the endangered Ugandan red colobus (Procolobus rufomitratus tephrosceles) using RAD sequencing" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015
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Data from: Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources
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Data from: Genome resources of <em>Xanthomonas vasicola</em> strains from various hosts: Reference-guided chromosome and plasmid assemblies for enhanced pathogen genomics
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Data from: "Polar bear (Ursus maritimus) transcriptome assembly and SNP discovery" in Genomic Resources Notes accepted 1 August 2013-30 September 2013
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Data from: "De novo assembly transcriptome for the rostrum dace (Leuciscus burdigalensis, Cyprinidae: fish) naturally infected by a copepod ectoparasite" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015
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Data from: "Complete mitochondrial and partial nuclear genomes for the jack species Caranx ignobilis (Forsskål, 1775) and C. melampygus (Cuvier, 1833) (Perciformes:Carangidae) from the High Hawaiian Islands" in Genomic Resources Notes accepted 1 October 2013 – 30 November 2013
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.