Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
140
datasets available to search
ShareScore release 0.9.0
Dataset results
140 results for “Illumina Sequencing”
The first large-scale sequencing of M. javanica transcriptomes from salivary glands, liver and small intestine by using Illumina HiSeq technology
GEO Series GSE100016. Manis javanica. 3 samples. Type: Expression profiling by high throughput sequencing.
An improved method of constructing degradome library suitable for Illumina high-throughput sequencing platform
GEO Series GSE138545. Oryza sativa. 1 samples. Type: Expression profiling by high throughput sequencing.
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500]
GEO Series GSE48035. Homo sapiens. 62 samples. Type: Expression profiling by high throughput sequencing.
B. anthracis transcriptome analysis using Illumina and SOLiD sequencing
GEO Series GSE13543. Bacillus anthracis. 8 samples. Type: Expression profiling by high throughput sequencing.
A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression
GEO Series GSE98562. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
A detailed analysis of second and third generation sequencing approaches for accurate length determination of short tandem repeats and homopolymers [TypeIII_Illumina]
GEO Series GSE286308. synthetic construct. 5 samples. Type: Other.
Illumina SBS sequencing and DNBSEQ perform similarly for single-cell transcriptomics
GEO Series GSE277740. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
microRNAs and isomiRs repertoire in poricne endometrium revealed by Illumina sequencing
GEO Series GSE64863. Sus scrofa. 30 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Representative Illumina sequencing libraries upon T7-polymerase based amplification
GEO Series GSE23868. Plasmodium falciparum 3D7. 4 samples. Type: Other.
Data from: Scaling up DNA barcoding - primer sets for simple and cost efficient arthropod systematics by multiplex PCR and Illumina amplicon sequencing
1. The simplicity and cost efficiency of Illumina amplicon sequencing has greatly contributed to the advancement of DNA barcoding and metabarcoding applications. However, current amplicon sequencing based barcoding approaches are usually restricted to short, single-locus fragments, limiting their taxonomic and phylogenetic resolution. 2. Here, we establish a cost efficient and simple multiplex PCR protocol for arthropod systematics by Illumina amplicon sequencing. We introduce primer sets, including several new, generic primers, to reliably amplify nine loci across a wide range of arthropods. Using a diverse collection of arthropod species from 19 orders, we test loci for amplification efficiency and estimate the effect of cross-species amplification bias on taxon recovery from bulk community samples. We then explore the taxonomic and phylogenetic utility of the primer sets, focusing on a dataset of spiders that includes both deep and recent divergences. 3. The set of loci provides good phylogenetic support across a wide taxonomic spectrum, making it a useful addition to COI for resolving lineages within a comparative context. All loci recover sequences for the majority of arthropod taxa in separate PCRs. However, cross-species amplification bias in some primers prevents an exhaustive taxon recovery from bulk community samples. 4. Our protocol makes it possible to generate multilocus datasets for large numbers of arthropod taxa for a fraction of the price and workload of Sanger sequencing. This opens up the possibility for parallel phylogenetic and taxonomic analysis of large collections of arthropods, but also enables rapid exploratory analyses of target lineages. Primers for metabarcoding applications should be carefully evaluated for their performance in bulk community samples and chosen to minimize cross-species amplification bias.
Examining RNA Transcript Changes in Stem Cells Undergoing Differentiation, Using Short and Long Reads Sequencing Technologies [Illumina short reads]
GEO Series GSE156370. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
miRNA profiling by Illumina sequencing technology
GEO Series GSE19807. Urocitellus parryii. 3 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Data from: Scaling up DNA barcoding - primer sets for simple and cost efficient arthropod systematics by multiplex PCR and Illumina amplicon sequencing
Open the record for dataset details and reuse information.
Transcriptomic profiles of CD4+ T lymphocytes from RhoA wild type (WT) and RhoA G17V mice were generated by deep sequencing in duplicate, using Illumina poly-A RNA seq.
GEO Series GSE101340. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Endogenous short RNAs in Mucor circinelloides sequenced on the Illumina platform (Solexa)
GEO Series GSE18958. Mucor circinelloides. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A detailed analysis of second and third generation sequencing approaches for accurate length determination of short tandem repeats and homopolymers [TypeII_Illumina]
GEO Series GSE286307. synthetic construct. 25 samples. Type: Other.
Illumina Solexa Digital Gene Expression Sequencing Facilitates Quantitative Analysis of Wild Type (Kasa-1) and OsMYB103L overexpression transgenic rice plant (Y103-1). Transcriptomes
GEO Series GSE52394. Oryza sativa. 2 samples. Type: Expression profiling by high throughput sequencing.
Illumina 3'UTR biased-sequencing of total homogenate from mPFC and CeA of mice following chronic intermittent ethanol exposure and microglia depletion
GEO Series GSE142571. Mus musculus. 53 samples. Type: Expression profiling by high throughput sequencing.
High concordance between Illumina HiSeq2500 and NextSeq500 for Reduced Representation Bisulfite Sequencing (RRBS)
GEO Series GSE87097. Mus musculus. 2 samples. Type: Methylation profiling by high throughput sequencing.
RNA sequencing results of treatment with BET inhibitor (JQ1) in human diffuse large B-cell lymphoma (DLBCL) cells based on Illumina HiSeq 2500 platform
GEO Series GSE144821. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.