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452 results for “Mitogenomics”
Fig. 4 in Comparative Analysis of Complete Mitogenomes of Two Gobies and Their Phylogenetic Implication.
Fig. 4. Relative synonymous codon usage of Protein-coding genes in Oxyurichthys microlepis.
FIG. 2 in First report of complete mitogenome for an Itarinae species (Orthoptera, Grylloidea) with phylogenetic analysis
FIG. 2. — The relative synonymous codon usage (RSCU) of Itara minor Chopard, 1925.
FIG. 1 in First report of complete mitogenome for an Itarinae species (Orthoptera, Grylloidea) with phylogenetic analysis
FIG. 1. — The circular mitochondrial genome map of Itara minor Chopard, 1925.
Creating, curating, and evaluating a mitogenomic reference database to improve regional species identification using environmental DNA
<p><span>Species detection using eDNA is revolutionizing global capacity to monitor biodiversity. However, the lack of regional, vouchered, genomic sequence information—especially sequence information that includes intraspecific variation—creates a bottleneck for management agencies wanting to harness the complete power of eDNA to monitor taxa and implement eDNA analyses. eDNA studies depend upon regional databases of mitogenomic sequence information to evaluate the effectiveness of such data to detect and identify taxa. We created the Oregon Biodiversity Genome Project to create a database of complete, nearly error-free mitogenomic sequences for all of Oregon's fishes. We have successfully assembled the complete mitogenomes of 313 specimens of freshwater, anadromous, and estuarine fishes representing 24 families, 55 genera, and 129 </span><span>species and lineages. Comparative analyses of these sequences illustrate that many regions of the mitogenome are taxonomically informative, that the short (~150 bp) mitochondrial "barcode" regions typically used for eDNA assays do not consistently diagnose for species, and that complete single or multiple genes of the mitogenome are preferable for identifying Oregon's fishes. This project provides a blueprint for other researchers to follow as they build regional databases, illustrates the taxonomic value and limits of complete mitogenomic sequences, and offers clues as to how current eDNA assays and environmental genomics methods of the future can best leverage this information.</span></p>
Dataset for "Comprehensive Identification of NUMTs in the Human Reference Genome through Pan-Mitogenome"
<p><strong>存放"Comprehensive Identification of NUMTs in the Human Reference Genome through Pan-Mitogenome"文章中的相关数据。</strong></p> <p>包括blastn出来的原始output文件;mtDNA-like short segments fastq文件;ATAC-seq的fastq文件;</p> <p>以及文章中提及的supplementary 表格和bed文件</p>
Creating, curating, and evaluating a mitogenomic reference database to improve regional species identification using environmental DNA
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Transitioning from environmental genetics to genomics using mitogenome reference databases
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Re-annotated genomes for plastomes and mitogenomes
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Multiple alignment data for diatom plastomes and mitogenomes
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Data from: Uncovering new lineages in the Sunda Pangolin (<em>Manis javanica</em>) with museum mitogenomics
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Data from: Independent evolution of highly variable, fragmented mitogenomes of parasitic lice
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Archaeological mitogenomes illuminate the historical ecology of sea otters (Enhydra lutris) and the viability of reintroduction
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Ancient dog mitogenomes support the dual dispersal of dogs and agriculture into South America
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Data from: Affordable de novo generation of fish mitogenomes using amplification-free enrichment of mitochondrial DNA and deep sequencing of long fragments
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Data from: The mitogenome of freshwater loach Homatula laxiclathra (Teleostei: Nemacheilidae) with phylogenetic analysis of Nemacheilidae
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Archival mitogenomes identify invasion by the Batrachochytrium dendrobatidis CAPE lineage caused an African amphibian extinction in the wild
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Alignment of mitogenome sequences (FASTA file) for a paleogenomic investigation of overharvest implications in an endemic wild reindeer subspecies
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Alignments of reindeer/caribou mitogenome sequences
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Haplodiploidy accelerates mitogenome evolution in insects
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Mitogenome alignment of 159 unique haplotypes representing 455 individual killer whales
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.