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104
datasets available to search
ShareScore release 0.9.0
Dataset results
104 results for “allopolyploid”
High through put screen of small RNA in parental, hybrid and allopolyploid wheat
GEO Series GSE29243. Triticum aestivum; Triticum turgidum subsp. durum; Aegilops tauschii. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
LHP1-mediated conditional repression of subgenome-diversified defenses is responsible for the high plasticity of allopolyploid wheat
GEO Series GSE218538. Triticum aestivum. 21 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
A quantitative computational framework for allopolyploid single-cell data integration and core gene ranking in development [scRNA-seq]
GEO Series GSE224228. Triticum aestivum. 2 samples. Type: Expression profiling by high throughput sequencing.
Cis- and trans- regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids
GEO Series GSE29687. Arabidopsis suecica; Arabidopsis arenosa x Arabidopsis thaliana; Arabidopsis thaliana; Arabidopsis arenosa. 5 samples. Type: Expression profiling by high throughput sequencing.
mRNA and sRNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation for Allopolyploid Heterosis in Nascent Hexaploid Wheat
GEO Series GSE56587. Triticum aestivum; Triticum turgidum; Aegilops tauschii. 50 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat
GEO Series GSE167479. Triticum aestivum. 204 samples. Type: Expression profiling by high throughput sequencing.
Figure 1 from: Vallejo-Marin M (2012) Mimulus peregrinus (Phrymaceae): A new British allopolyploid species. PhytoKeys 14: 1-14. https://doi.org/10.3897/phytokeys.14.3305
Figure 1 - Holotype of Mimulus peregrinus Vallejo-Marin [11-LED-seed-2-14; barcode E00570050].
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140 year old naturally established neo-allopolyploid monkeyflower
GEO Series GSE95799. Erythranthe lutea x Erythranthe guttata; Erythranthe lutea; Erythranthe guttata; Mimulus peregrinus. 20 samples. Type: Methylation profiling by high throughput sequencing.
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
GEO Series GSE15443. Arabidopsis thaliana; Arabidopsis arenosa; Arabidopsis suecica; Arabidopsis arenosa x Arabidopsis thaliana. 58 samples. Type: Non-coding RNA profiling by high throughput sequencing; Non-coding RNA profiling by array.
Duplicate genes increase expression diversity in closely related species and allopolyploids
GEO Series GSE9513. Arabidopsis thaliana; Arabidopsis arenosa; Arabidopsis suecica. 5 samples. Type: Expression profiling by array; Genome variation profiling by array.
Reduced DNA methylation in Arabidopsis allopolyploids induces genome-specific changes in gene expression
GEO Series GSE9512. Arabidopsis thaliana; Arabidopsis suecica. 1 samples. Type: Expression profiling by array.
Fig. 3 in Cryptic and repeated "allopolyploid" speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau
Fig. 3 Phylogenetic tree and geographical distribution of the 34 haplotypes detected based on ITS. In the phylogeny (left, Bayesian analysis), posterior probabilities are shown above the branches, and the five genotype lineages are indicated A, B, C, D, and E
Fig. 1 in Cryptic and repeated "allopolyploid" speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau
Fig. 1 Structure analysis of the A. przewalskianum complex when K =2, 3, 5, 6 clusters are assumed. For each K value, results of the run with the highest value of LnPD were used (Supporting Information, Table S6).
Fig. 2 in Cryptic and repeated "allopolyploid" speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau
Fig. 2 Neighbor-Net analysis based on the standard matrix from AFLP results using the program SPLITSTREE version 4.6. All individuals can be identified in the seven groups, which correspond to the result of the Structure analysis when K =6. The tetraploid populations clustered into three groups: STP (populations in the southern QTP), ETP (populations in the eastern QTP), and NTP (populations in the northern QTP); the diploid populations clustered into five groups and DP- 2 was mixed with NTP, corresponding to the pattern in the PCoA plot in Fig. S1 (Supporting information)
Fig. 4 in Cryptic and repeated "allopolyploid" speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau
Fig. 4 Phylogenetic tree and geographical distribution of the 34 haplotypes detected on the basis of the CHS loci. In the phylogeny (left, Bayesian analysis), posterior probabilities are shown above the branches, and the five genotype lineages are indicated I, II, III, IV, and V
Fig. 2 in Allopolyploid origin of the Balkan endemic Ranunculus wettsteinii (Ranunculaceae) inferred from nuclear and plastid DNA sequences
Fig. 2 Phylogenetic tree for Ranunculus species based on plastid regions (rpl32-trnL, rps16-trnQ, trnK-matK, ycf6-psbM). a Consensus tree inferred from the two most parsimonious trees (CI=0.76; RI=0.93). Numbers above branches show bootstrap values (3,000 replicates). b
Gene expression in three independent resynthesized Brassica napus allopolyploid lines and their diploid progenitors
GEO Series GSE13431. Brassica oleracea; Brassica rapa; Arabidopsis thaliana; Brassica napus; Brassica sp.. 7 samples. Type: Expression profiling by array.
Expression profiles of allopolyploids and their parents lines during allopolyploidization (Chines Spring and hexaploid)
GEO Series GSE65262. Triticum aestivum. 12 samples. Type: Expression profiling by array.
Non-additive gene expression in the natural allopolyploid Coffea arabica is massively affected by growth temperature
GEO Series GSE24682. Coffea arabica. 72 samples. Type: Expression profiling by array.
Transcriptomic changes accompanying allopolyploidization are commonly paralleled in Brassica napus.
GEO Series GSE84451. Brassica napus; Brassica oleracea; Brassica rapa; synthetic construct. 19 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
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