Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
120
datasets available to search
ShareScore release 0.7.1
Dataset results
120 results for “aquatic ecosystems”
Data from: A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems
The use of environmental DNA (eDNA) to determine the presence and distribution of aquatic organisms has become an important tool to monitor and investigate freshwater communities. The successful application of this method in the field, however, is dependent on the effectiveness of positive DNA verification, which is influenced by site-specific environmental parameters. Factors affecting lower eDNA concentrations in aquatic ecosystems include flow conditions, and the presence of substances that possess DNA-binding properties or inhibitory effects. In this study we investigated the influence of different environmental parameters on the detection success of eDNA using the invasive goby Neogobius melanostomus. In a standardized laboratory setup, different conditions of flow, sediment-properties, and fish density were compared, as well as different potential natural inhibitors such as algae, humic substances, and suspended sediment particles. The presence of sediment was mainly responsible for lower eDNA detection in the water samples, regardless of flow-through or standing water conditions and a delayed release of eDNA was detected in the presence of sediment. Humic substances had the highest inhibitory effect on eDNA detection followed by algae and siliceous sediment particles. The results of our study highlight that a successful application of eDNA methods in field surveys strongly depends on site-specific conditions, such as water flow conditions, sediment composition, and suspended particles. All these factors should be carefully considered when sampling, analyzing, and interpreting eDNA detection results.
Data from: Fear mediates trophic cascades: nonconsumptive effects of predators drive aquatic ecosystem function
Predators control prey populations and influence communities and the functioning of ecosystems through a combination of consumptive and nonconsumptive effects. These effects can be locally confined to one ecosystem but can also be extended to neighboring ecosystems. In this study, we investigated the nonconsumptive effects of terrestrial avian predators on the communities of aquatic invertebrates inhabiting bromeliads and on the functioning of these natural ecosystems. Bromeliads with stuffed birds placed nearby showed a decrease in aquatic damselfly larvae abundance and biomass, and we can infer that these changes were caused by antipredator responses. These larvae, which are top predators in bromeliad ecosystems, changed the composition of the entire aquatic invertebrate community. While total species richness, mesopredator richness, and shredder abundance increased in the presence of birds, scraper biomass decreased, possibly as a consequence of the increase in mesopredator richness. High scraper biomass in the absence of birds may have accelerated detrital decomposition, making more nutrients available for bromeliads, which grew more. These results show that nonconsumptive effects triggered by terrestrial predators can cascade down to lower trophic levels and dramatically affect the functioning of aquatic ecosystems, which can in turn alter nutrient provision to terrestrial ecosystems.
Data from: Litter movement pathways across terrestrial-aquatic ecosystem boundaries affect litter colonization and decomposition in streams
1. Streams and their riparian zones are connected by spatial flows of organic matter, and constitute a model example of a meta-ecosystem. Fluxes of leaf litter from the riparian zone to the stream are a major energy source in stream food webs. Leaf litter can enter the stream vertically, falling from the tree and into the stream, or laterally, washing into the stream after a period of exposure in the terrestrial ecosystem. The latter can contribute up to 23% to the total amount of litterfall entering streams. 2. To determine if decomposition, microbial and invertebrate colonization of lateral litter inputs are similar to those of vertical inputs, we assessed leaf decomposition of alder, poplar and a 1:1 mixture of the two species in three scenarios across a gradient of terrestrial:aquatic exposures. 3. Overall decomposition was explained by a negative exponential model and decreased with the increase in the period of terrestrial exposure in all cases. Invertebrate colonization tended to decrease with the increase in the period of terrestrial exposure, but total invertebrate richness and biomass were more affected by litter type than by the exposure scenario, attaining higher values in the mixture than in the species alone. 4. As the length of exposure in the terrestrial ecosystem increased, in-stream decomposition rates of leaf litter decreased. Comparing leaf species treatments, alder decomposition rates were faster than poplar and the alder-poplar mixture. 5. The richness of the aquatic hyphomycete community colonizing leaf litter after submergence decreased and sporulation rates were strongly inhibited with an increasing terrestrial exposure period. While fungi colonizing leaf litter exposed only in the stream invested in rapid reproduction, fungi colonizing litter with prior terrestrial exposure built up more biomass. 6. We conclude that the path taken by the litter fluxes has important effects on the functioning of the receiving ecosystem. Studies relying only on the fate of freshly abscissed leaf litter (vertical inputs) may not present a complete picture of the decomposition process in streams and may have been overestimating the overall richness and reproductive activity of the aquatic hyphomycetes colonizing leaf litter.
Supplementary material 1 from: Cerrato C, Rocchia E, Brunetti M, Bionda R, Bassano B, Provenzale A, Bonelli S, Viterbi R (2019) Butterfly distribution along altitudinal gradients: temporal changes over a short time period. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 91-118. https://doi.org/10.3897/natureconservation.34.30728
Supplementary data
Supplementary material 2 from: Wejnerowski Ł, Aykut TO, Pełechata A, Rybak M, Dulić T, Meriluoto J, Dziuba MK (2022) Plankton hitch-hikers on naturalists' instruments as silent intruders of aquatic ecosystems: current risks and possible prevention. NeoBiota 73: 193-212. https://doi.org/10.3897/neobiota.73.82636
Scheme of the handmade plankton nets used in the experiments and dimensions
Supplementary material 6 from: Wejnerowski Ł, Aykut TO, Pełechata A, Rybak M, Dulić T, Meriluoto J, Dziuba MK (2022) Plankton hitch-hikers on naturalists' instruments as silent intruders of aquatic ecosystems: current risks and possible prevention. NeoBiota 73: 193-212. https://doi.org/10.3897/neobiota.73.82636
Survey responses by country
Supplementary material 4 from: Wejnerowski Ł, Aykut TO, Pełechata A, Rybak M, Dulić T, Meriluoto J, Dziuba MK (2022) Plankton hitch-hikers on naturalists' instruments as silent intruders of aquatic ecosystems: current risks and possible prevention. NeoBiota 73: 193-212. https://doi.org/10.3897/neobiota.73.82636
The list of questions and possible responses in the survey
Fig. 1 in Review paper The Role of Bacterial-based Protist Communities in Aquatic and Soil Ecosystems and the Carbon Biogeochemical Cycle, with Emphasis on Naked Amoebae
Fig. 1. Protocol for respiration and microbial biomass experiments. Respiration was measured with an infrared CO gas analyzer, glu2 cose (444 µg/g soil) in solution was added as a supplement. Microbial assays for naked amoebae used a culture observation method (COM) for living amoebae routinely employed in our laboratory (e.g. Anderson 2000), glutaraldehyde-fixed portions of the soil sample were examined microscopically for bacteria and heterotrophic nanoflagellates using a fluorescent staining technique (Anderson et al. 2001). For experiments of one-week duration, sampling was done on Days 1, 4, and 8. For two-week duration experiments, sampling was done on Days 1, 8, and 15.
Primary detection records for aquatic nonindigenous species in global estuarine and marine ecosystems and the Great Lakes
<p><strong>Aim</strong></p> <p>The introduction of aquatic non-indigenous species (ANS) has become a major driver for global changes in species biogeography. We examined spatial patterns and temporal trends of ANS detections since 1965 to inform conservation policy and management. </p> <p><strong>Location</strong></p> <p>Global</p> <p><strong>Methods</strong></p> <p>We assembled an extensive dataset of first records of detection of ANS (1965-2015) across 49 aquatic ecosystems, including the i) year of first collection, ii) population status and iii) potential pathway(s) of introduction. Data were analysed at global and regional levels to assess patterns of detection rate, richness, and transport pathways. </p> <p><strong>Results</strong></p> <p>An annual mean of 43 (± 16 S.D.) primary detections of ANS occurred – one new detection every 8.4 days for 50 years. The global rate of detections was relatively stable during 1965-1995, but increased rapidly after this time, peaking at roughly 66 primary detections per year during 2005-2010, then declining marginally. Detection rates were variable within and across regions through time. Arthropods, molluscs and fishes were the most frequently reported ANS. Most ANS were likely introduced as stowaways in ships' ballast water or biofouling, although direct evidence is typically absent. </p> <p><strong>Main conclusions</strong></p> <p>This synthesis highlights the magnitude of recent ANS detections, yet almost certainly represents an underestimate as many ANS go unreported due to limited search effort and diminishing taxonomic expertise. Temporal rates of detection are also confounded by reporting lags, likely contributing to the lower detection rate observed in recent years. There is a critical need to implement standardized, repeated methods across regions and taxa to improve the quality of global-scale comparisons and sustain core measures over longer timescales. It will be fundamental to fill in knowledge gaps given that invasion data representing broad regions of the world's oceans are not yet readily available and to maintain knowledge pipelines for adaptive management. </p>
Supplementary material 4 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: statistical data
Supplementary material 5 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurement
Supplementary material 3 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurements
Supplementary material 2 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: parameters data
Supplementary material 1 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurement
Supplementary material 1 from: Petriccione B, Bricca A (2019) Thirty years of ecological research at the Gran Sasso d'Italia LTER site: climate change in action. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 9-39. https://doi.org/10.3897/natureconservation.34.30218
: Data type: measurements
Supplementary material 1 from: Balestrini R, Delconte C, Buffagni A, Fumagalli A, Freppaz M, Calvo E, Buzzetti I (2019) Dynamic of nitrogen and dissolved organic carbon in an alpine forested catchment: atmospheric deposition and soil solution trends. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 41-66. https://doi.org/10.3897/natureconservation.34.30738
: Data type: statistical data
Supplementary material 2 from: Pulina S, Lugliè A, Mariani MA, Sarria M, Sechi N, Padedda BM (2019) Multiannual decrement of nutrient concentrations and phytoplankton cell size in a Mediterranean reservoir. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 163-191. https://doi.org/10.3897/natureconservation.34.30116
: Data type: multimedia
Supplementary material 1 from: Pulina S, Lugliè A, Mariani MA, Sarria M, Sechi N, Padedda BM (2019) Multiannual decrement of nutrient concentrations and phytoplankton cell size in a Mediterranean reservoir. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 163-191. https://doi.org/10.3897/natureconservation.34.30116
: Data type: multimedia
Supplementary material 6 from: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217-246. https://doi.org/10.3897/natureconservation.34.30055
: Data type: measurement
Supplementary material 2 from: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217-246. https://doi.org/10.3897/natureconservation.34.30055
: Data type: measurement
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.