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Fig. 2 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 2. Relationships between latitude and the average taxonomic distinctness of overall helminths (A) and nematodes (B).

Fig. 4 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 4. Parasite richness and average taxonomic distinctness by host trophic guild (the size of circle represents the number of hosts belonging to each trophic guild).

Fig. 1 in Effects of latitude, host body size, and host trophic guild on patterns of diversity of helminths associated with humans, wild and domestic mammals of Mexico

Fig. 1. Maps showing the geographic locations of the records, classified by phylum of the subsetted database.

Fig. 1 in Cardiopulmonary nematodes of wild carnivores from Denmark: Do they serve as reservoir hosts for infections in domestic animals?

Fig. 1. Map of Denmark showing Denmark's position in Europe and a map of Denmark showing the regional division and the four major cities.

Fig. 5 in Cerebral cysticercosis in a wild Bengal tiger (Panthera tigris tigris) in Bhutan: A first report in non-domestic felids

Fig. 5. Cladogram showing the relation between the sequence of the nad1 gene (491bp) amplified from the sediment of the 21 μm filter of the sieving method for isolation of taeniid eggs from faeces of the tiger analysed in this study highlighted in bold (MT920328); together with the sequence of the same gene of different Taenia spp.

Fig. 4 in Cerebral cysticercosis in a wild Bengal tiger (Panthera tigris tigris) in Bhutan: A first report in non-domestic felids

Fig. 4. Cladogram showing the relation between the sequences of the cytB gene of Taenia solium from the present study highlighted in bold (MT371084- MT371085) and unique published sequences of the cytB gene available in GenBank from Ecuador (ECU), Tanzania (TANZ), Mexico (MEX), Brazil (BRA), Cameroun (CAM), Thailand (THA), Indonesia (INDO), Madagascar (MDG), INDIA, China (CHI) and Nepal (NEP). The sequences for the cytB gene from Taenia saginata (AB066581) and Taenia asiatica (AB066580) are also included. The cytB sequence from Echinococcus multilocularis (MK843307) was used as an outgroup.

Fig. 1 in Cerebral cysticercosis in a wild Bengal tiger (Panthera tigris tigris) in Bhutan: A first report in non-domestic felids

Fig. 1. Camera trap image of the tiger infected with Taenia solium reported in this article captured on the 15th of November 2014. The image was taken during a survey of the Bengal tiger population at national level in Bhutan. Copyright: Nature Conservation Division, DoFPS, MoAF, Bhutan.

Fig. 2 in Cerebral cysticercosis in a wild Bengal tiger (Panthera tigris tigris) in Bhutan: A first report in non-domestic felids

Fig. 2. Cysts identified at necropsy of the Bengal tiger in Bhutan (left) and isolated in a jar (right).

Fig. 3 in Cerebral cysticercosis in a wild Bengal tiger (Panthera tigris tigris) in Bhutan: A first report in non-domestic felids

Fig. 3. Cladogram showing the relation between the sequences of the cox1 gene of Taenia solium from the present study highlighted in bold (MT366763- MT366764) and unique published sequences of the cox1 gene available in GenBank from Tanzania (TANZ), Brazil (BRA), Mexico (MEX), Ecuador (ECU), Madagascar (MDG), Indonesia (INDO- PA, INDO-BA), China (CHI), Nepal (NEP), Thailand (THA) and India (TAE). Sequences for the cox1 gene from Taenia saginata (AB066495) and T. asiatica (AB066494) were also included. The cox1 sequence of Echinococcus multilocularis (MN251845) was used as an outgroup.

Ecological Dynamics and Coexistence Patterns of Wild and Domestic Mammals in an Abandoned Landscape

This repository contains all scripts and data used for analysis and figures for the paper Zuleger, Annika M., Perino, Andrea, Pereira, Henrique M. (2024): Ecological Dynamics and Coexistence Patterns of Wild and Domestic Mammals in an Abandoned Landscape. Wildlife Biology. DOI: 10.1002/wlb3.01319 Full Changelog: https://github.com/AMZuleger/Dynamics_Coexistence_Peneda/commits/v1.0.0 <h2>Abstract</h2> The issue of agricultural land abandonment in Southern Europe has raised concerns about its impact on biodiversity. While abandoned areas can lead to positive developments like creating new habitats and restoring native vegetation, they can also result in human-wildlife conflicts, particularly in areas with extensive farming and free-ranging livestock. To understand habitat selection and use of livestock and wild ungulates, it is essential to study their spatial and temporal distribution patterns. In this context, we conducted a long-term large mammal monitoring project using camera traps in the Peneda-Gerês National Park in Northern Portugal. Our primary focus was on exploring habitat preferences, occupancy dynamics, and potential spatial use correlations between domestic and wild species, utilizing dynamic occupancy models. Most wild species exhibited stable area use patterns, while domestic species experienced marginal declines, and the Iberian ibex displayed signs of repopulation. We observed distinct effects of habitat variables on occupancy, colonization, and extinction, revealing species-specific patterns of habitat utilization. Human disturbance had a notable impact on domestic species but did not affect wild ones. Camera sensitivity emerged as a critical factor, enhancing detection probability for all species. Additionally, habitat and weather variables exerted varying effects on detection probabilities, underscoring the necessity of accounting for these factors in modeling the detection process. We found shared habitat preferences between cattle and horses, both positively correlated with wolves, suggesting potential human-wildlife conflicts. Despite extensive spatial overlap, domestic and wild species seem to exhibit ecological independence due to distinct strategies and low predation pressure. Overall, the study emphasizes the multifaceted factors influencing habitat use. The observed species associations contribute to understanding ecological relationships and potential resource competition, emphasizing the importance of considering environmental variables for effective wildlife conservation and management. <div> <h2>Structure</h2> </div> <ul> <li>R_Ecological_Dynamics_and_Coexistence_Patterns_rv.R --> R Script to perform all analysis from the publication <ul> <li>This is the only file needed to perform the entire analysis. Code will automaticall download data from GitHub and produce all Results and Figures.</li> </ul> </li> </ul> <div> <h3>Data</h3> </div> <ul> <li>Presence-absence tables for each species (per grid cell and week) from 2015 to 2022 (e.g. Domestic cattle.csv)</li> <li>SiteCovs_2015_grid.csv --> intial site covariates for the first primary sampling period</li> <li>yearlySiteCovs_grid.rds --> yearly site covariates for each primary sampling period</li> <li>ObsCovs.rds --> observation covariates for each secondary sampling period</li> </ul> <h2>Authors</h2> Annika M. Zuleger*, Andrea Perino and Henrique M. Pereira *Corresponding author: Annika Mikaela Zuleger, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany Email: <a href="mailto:annika_mikaela.zuleger@idiv.de">annika_mikaela.zuleger@idiv.de</a>

Fig. 2 in Trypanosoma cruzi in domestic and wild mammals in the northeast region of Colombia

Fig. 2. Study area and detection of T. cruzi in domestic and wild mammals. Discrete typing units (DTUs): TcI (T cruzi I genotype), TcII (T cruzi II genotype), UK (unknown genotype).

Fig. 1 in Trypanosoma cruzi in domestic and wild mammals in the northeast region of Colombia

Fig. 1. Environmental characteristics of Villa Lucia village. a) Palms predominate in the vegetation; b) Crops and annexes adjacent to the house are present in the peridomicile.

Denmark's Not-So-Oldest Sheep: An Update on Domestic Animals from the Femern Project

Sheep and goats are often considered to be the oldest livestock animals in Denmark. In this contribution, we present the results of ZooMS measurements from seven ovicaprid bones from the Femern project, an excavation in the area of the former Syltholm Fjord (Lolland, Denmark). The bones were morphologically identified as sheep or goats and represented the oldest dated remains of both species in Denmark. However, the ZooMS analysis showed that more than half of the morphological identifications were incorrect. For the other samples, we refined the identifications. Hence, our study confirms that indications of sheep and goat husbandry based on bone morphology alone should be treated with caution. The probability of misidentification in our case was high, even in the case of well-preserved bones.

opencc-by-4.0Jan 2016View details →

Figure 1 in Domestication level of the most popular aquarium fish species: is the aquarium trade dependent on wild populations?

Figure 1. – Number of aquarium fish species per domestication level (white: freshwater, n = 50 species; black: marine, n = 50 species).

opencc-by-4.0Mar 2024View details →

Supplement: Genomic and phenotypic imprints of microbial domestication on cheese starter cultures

This data repository contains the latest version of the supplemental data, code and figures for the following manuscript: Vincent Somerville, Nadine Thierer, Remo S. Schmidt, Alexandra Roetschi, Laurianne Braillard, Monika Haueter, Hélène Berthoud, Noam Shani , Ueli von Ah, Florent Mazel & Philipp Engel 2024. “Genomic and phenotypic imprints of Neolithic domestication on Cheese Starter cultures”  All additional genomic data is stored under the following Bioprojects on NCBI: PRJNA717134 PRJNA1048529 PRJNA1083966 PRJNA1157897

opencc-by-4.0Sep 2024View details →

Data from: Repairing a deleterious domestication variant in a floral regulator of tomato by base editing

This repository contains the data necessary to run the analysis described in the publication "Repairing a deleterious domestication variant in a floral regulator of tomato by base editing" by Glaus et al., 2024. A preprint is available on bioRxiv (doi: <a href="https://doi.org/10.1101/2024.01.29.577624" rel="nofollow">https://doi.org/10.1101/2024.01.29.577624</a>)   82_acc_Spim0.1_filtered.vcf.gz -- variant call results for 82 genomes with LA1589 as reference 82_acc_Spim0.1_filtered_SIFT_out.tar.gz -- sift4g prediction results for 82 genomes with LA1589 as reference (SIFTannotations.xls and SIFTpredictions.list) sift_lib_LA1589.tar.gz -- sift4g library for the LA1589 genome SolpimLA1589_liftoff.tar.gz -- liftoff annotation of LA1589 genome   In case of any questions, please contact Sebastian Soyk (sebastian.soyk@unil.ch)

opencc-zeroJan 2024View details →

Linked collectors and determiners for: Prey identification of free-ranging domestic cats (Felis catus) from rural and natural areas of Spain through scat analysis.

Natural history specimen data linked to collectors and determiners held within, "Prey identification of free-ranging domestic cats (Felis catus) from rural and natural areas of Spain through scat analysis". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/ef448f77-16de-4e3f-9e3c-247f4f76efff">https://bionomia.net/dataset/ef448f77-16de-4e3f-9e3c-247f4f76efff</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/ef448f77-16de-4e3f-9e3c-247f4f76efff">https://gbif.org/dataset/ef448f77-16de-4e3f-9e3c-247f4f76efff</a>. Formatted as a Frictionless Data package.

opencc-by-4.0Jun 2021View details →

Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach

Database used for the analysis of the manuscript entitled: Clusters of cause specific neonatal mortality and its association with per capita gross domestic product: a structured spatial analytical approach. The aim of the study was to investigate the cluster areas of asphyxia-associated neonatal mortality and to explore the per capita gross domestic product (GDP) as an associated risk factor in São Paulo State (SP), Brazil.

opencc-by-4.0Aug 2021View details →

FIG. 9. — Two young men distributing meat from a domestic pig Sus scrofa Linnaeus, 1758 in Prey into kin: the cosmological role of the pig in the Kelabit Highlands, Sarawak

FIG. 9. — Two young men distributing meat from a domestic pig Sus scrofa Linnaeus, 1758 (berak) at irau in Bario, 1987. Photo credit: Kaz Janowski.