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Dataset results
89 results for “draft genome”
Draft Genomes of Fungi Isolated from the International Space Station during the Microbial Tracking-2 Experiment
Draft genomes of fungi isolated from different surfaces on the International Space Station, as part of the Microbial Tracking 2 mission (ISS-MOP).
Draft genome sequences of Aspergillus and Penicillium species isolated from the International Space Station and Crew Resupply Vehicle Capsule
Genome sequencing and assembly of fungal isolates belonging to Penicilliium and Aspergillus genera isolated from International Space Station
Microbial Observatory (ISS-MO): Draft Genome Sequence of two Aspergillus fumigatus Strains Isolated from the International Space Station
Aspergillus fumigatus is a saprophytic, filamentous fungus that is ubiquitous outdoors (soil, decaying vegetation) and indoors (hospitals, simulated closed habitats, etc.). A. fumigatus can adapt to various environmental conditions and form airborne conidia that are the inoculum for a variety of diseases (e.g. non- and invasive pulmonary infections, allergic bronchopulmonary aspergillosis, etc.) in immunocompromised hosts. In an on-going Microbial Observatory Experiments on the International Space Station (ISS) molecular phylogeny of several fungal isolates were characterized. Two strains, ISSF 21 and IF1SW-F4, were isolated from the HEPA filter and the surface of the Cupola of the ISS, respectively. Using primers targeting the internal transcribed spacers ITS1 and 2, both isolates were identified as A. fumigatus. The whole genome sequence analysis of ISSF 21 revealed increased number of single nucleotide polymorphisms (SNPs) when compared to the reference A. fumigatus 293. Knowing that A. fumigatus is an opportunistic pathogen and microgravity highly influences the antibiotic susceptibility and pathogenicity of microorganisms, we examined pathogenicity of both ISS isolates using the zebrafish larval model. The space station isolates (ISSF-021 and IF1SW-F4) were more virulent than two clinical strains (Af293 and CEA10) whose pathogenicity was highly characterized. Here the whole genome sequences of ISSF-021 strain are being deposited.
Draft Genome Sequences of Two Fusarium oxysporum Isolates Cultured from Infected Zinnia hybrida Plants Grown on the International Space Station
Draft genome sequences of two Fusarium oxysporum isolates cultured from infected Zinnia hybrida plants grown on the International Space Station
Draft Genome Sequences of novel Agrobacterium genomospecies 3 Associated from the International Space Station
The whole-genome sequences (WGS) of three pathogenic bacterial strains collected from the International Space Station (ISS) were generated and identified as being part of Class Alphaproteobacteria. The WGS studies would enable further genomic/biochemical characterization of taxa for these bacteria that have been subjected to the microgravity conditions of space.
Draft Genome Sequences of Members of the family Methylobacteriaceae Associated with the International Space Station
Draft Genome Sequences of isolates belonging to family Methylobacteriaceae Isolated from the International Space Station
Nothofagus pumilio draft genome lily.v01
Open the record for dataset details and reuse information.
Draft Genome sequences of Rhodotorula mucilaginosa isolated from the International space station
Draft Genome sequences of Rhodotorula mucilaginosa isolated from the International space station.
Gene annotations for <i>Strix occidentalis caurina</i> draft nuclear genome assembly version 1
<p><strong>NSO-wgs-v1-nuc.gff.bz</strong> : This file provides the gene annotations produced by the MAKER pipeline for the <em>Strix occidentalis caurina</em> draft whole nuclear genome assembly, NSO-wgs-v1-nuc.</p> <p><strong>NSO-wgs-v1-nuc-masked-homology-includes-LowComplexity.out.bz</strong> : This file provides the repeat annotations produced by the homology-based masking of NSO-wgs-v1-nuc that included masking of low complexity regions and simple repeats.</p> <p><strong>NSO-wgs-v1-nuc-masked-DeNovo-includes-LowComplexity.out</strong> : This file provides the repeat annotations produced by the <em>de novo</em> masking of NSO-wgs-v1-nuc that included masking of low complexity regions and simple repeats.</p> <p><strong>NSO-wgs-v1-nuc-masked-homology-no-LowComplexity.out.bz</strong> : This file provides the repeat annotations produced by the homology-based masking of NSO-wgs-v1-nuc that did not include masking of low complexity regions and simple repeats.</p> <p><strong>NSO-wgs-v1-nuc-masked-DeNovo-no-LowComplexity.out</strong> : This file provides the repeat annotations produced by the <em>de novo</em> masking of NSO-wgs-v1-nuc that did not include masking of low complexity regions and simple repeats.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.