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151
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Dataset results
151 results for “ecological integrity”
Data from: On the relative importance of CSR ecological strategies and integrative traits to explain species dominance at local scales
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Data from: Finding clarity in ecological outcomes using empirical integrated social-ecological systems: a case study of agriculture-dependent grassland birds
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Data from: MotionMeerkat: integrating motion video detection and ecological monitoring
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Data from: Integrating reproductive phenology in Ecological Niche Models changed the predicted future ranges of a marine invader
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A new method for integrating ecological niche modeling with phylogenetics to estimate ancestral distributions
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Kinematic integration during prey capture varies among individuals but not ecological contexts in bluegill sunfish, Lepomis macrochirus (Perciformes: Centrarchidae)
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Dataset on Article: Multiple stressors determine river ecological status at the European scale: Towards an integrated understanding of river status deterioration
<p>The shape file contains the raw data from the Global Change Biology article "River types, hydrology, riparian land use, nutrients, toxic substances, ecological status, stressor interactions". </p> <p><strong>General Information</strong></p> <p>Name of the dataset: MultipleStress_RiverEcoStatus.shp</p> <p>Type of dataset: vector data (shape file)</p> <p>Number of polygons: 52.847</p> <p>Geographic Coordinate System: GCS_WGS_1984</p> <p> </p> <p><strong>Contact details</strong></p> <p>Metadata / scientific contact person:</p> <p> First, last name: Sebastian Birk</p> <p> Email: <a href="mailto:sebastian.birk@uni-due.de">sebastian.birk@uni-due.de</a></p> <p> Institution: University of Duisburg-Essen, Faculty of Biology, Institute of Aquatic Ecology</p> <p> Address: Universitätsstrasse 5</p> <p> Postal code, city: 45141 Essen</p> <p> Country: Germany</p> <p> Web address: <a href="https://www.uni-due.de/aquatic_ecology/">https://www.uni-due.de/aquatic_ecology/</a></p> <p><strong>Attribute description</strong></p> <p><strong>m_zhyd_1</strong></p> <ul> <li>Unique identifier of FEC (Functional Elementary Catchment)</li> <li>Data structure: character</li> </ul> <p><strong>mars_bt12</strong></p> <ul> <li>Broad river type aggregated</li> <li>Data structure: character</li> </ul> <p><strong>eco_stat_2</strong></p> <ul> <li>Ecological status (class)</li> <li>Data structure: character</li> </ul> <p><strong>eco_stat_n</strong></p> <ul> <li>Ecological status (numeric class)</li> <li>Data structure: integer</li> </ul> <p><strong>LoadTPArea</strong></p> <ul> <li>Total phosphorous riverine loading (unit: kg km<sup>-2</sup> a<sup>-1</sup>)</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>LoadTN_Are</strong></p> <ul> <li>Total nitrogen riverine loading (unit: kg ha<sup>-1</sup> a<sup>-1</sup>)</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>lu_r_urb</strong></p> <ul> <li>Percent urban land use in the riparian zone</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>lu_r_agr</strong></p> <ul> <li>Percent agricultural land use in the riparian zone</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>hy_maf_abs</strong></p> <ul> <li>Alteration of mean annual flow (ratio scale)</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>hy_bfi_abs</strong></p> <ul> <li>Alteration of base flow (ratio scale)</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>msPAFP5EC5</strong></p> <ul> <li>Multi-substance Potentially Affected Fraction of species (msPAF-EC<sub>50</sub> based on 95<sup>th</sup> percentile)</li> <li>Decimal separator: comma</li> <li>Data structure: double</li> </ul> <p><strong>Further information</strong></p> <p>For more details on the dataset, see</p> <p>(Manuscript accepted, wating for publication at the moment)<br> </p> <p><strong>Acknowledgements</strong></p> <p>This work was funded by the MARS project (Managing Aquatic ecosystems and water resources under multiple stress), funded by the European Union under the 7th Framework Programme, contract no. 603378.</p>
Data from: Patterns and processes in complex landscapes: testing alternative biogeographic hypotheses through integrated analysis of phylogeography and community ecology in Hawai'i
The Island of Hawai'i is a dynamic assemblage of five volcanoes with wet forest habitat currently existing in four distinct natural regions that vary in area, age, and geographic isolation. In this complex landscape, alternative assumptions of the relative importance of specific habitat characteristics on evolutionary and ecological processes predict strikingly different general patterns of local diversity and regional similarity. In this study we compare alternative a priori hypotheses against observed patterns within two distinct biological systems and scales: community composition of wet forest vascular plant species and mitochondrial and nuclear genes of Drosophila sproati, a wet forest restricted endemic. All observed patterns display strong and similar regional structuring, with the greatest local diversity found in Kohala and the windward side of Mauna Loa, the least in Ka'ū and Kona, and a distinctive pattern of regional similarity that likely reflects the historical development of this habitat on the island. These observations largely corroborate a biogeographic model that integrates multiple lines of evidence, including climatic reconstruction, over those relying on single measures, such as current habitat configuration or substrate age. This method of testing alternative hypotheses across biological systems and scales is an innovative approach for understanding complex landscapes and should prove valuable in diverse biogeographic systems.
Supplementary material 1 from: González-Sargas E, Shafroth PB, Baró F (2024) Integrating social-ecological outcomes into invasive species management: the Tamarix case. NeoBiota 92: 173-192. https://doi.org/10.3897/neobiota.92.118502
Supplementary data
Supplementary material 2 from: Gauthey Z, Tentelier C, Lepais O, Elosegi A, Royer L, Glise S, Labonne J (2017) With our powers combined: integrating behavioral and genetic data to estimate mating success and sexual selection. Rethinking Ecology 2: 1-26. https://doi.org/10.3897/rethinkingecology.2.14956
JAGS code for the model : Data type: Programming code.
Supplementary material 1 from: Gauthey Z, Tentelier C, Lepais O, Elosegi A, Royer L, Glise S, Labonne J (2017) With our powers combined: integrating behavioral and genetic data to estimate mating success and sexual selection. Rethinking Ecology 2: 1-26. https://doi.org/10.3897/rethinkingecology.2.14956
Data and model outputs : Data type: Body size, behavioural and genetic data, and model output.
FIGURE 4 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 4. Anatomical features associated with filter feeding in crabeater seal (Lobodon carcinophaga skull, public domain image), and gray whale (Eschrichtius robustus skull, authors' work).
FIGURE 10 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 10. Odontoceti stem and familial level diversity through time. The group "Delphinoidea" includes Delphinidae, Monodontidae, and Phocoenidae, as well as extinct members of this crown group of uncertain phylogenetic placement. The "river dolphins" closely related to these taxa (Inioidea and Lipotidae) are plotted separately to emphasize their diversity in the fossil record compared to the present. "Ziphioidea" includes Ziphiidae and closely related stem taxa as identified by Bianucci et al. (2016). Dashed vertical lines: black, epoch boundaries; gray, age boundaries.
FIGURE 6 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 6. Generic level diversity of marine mammal groups through time. Dashed vertical lines: black, epoch boundaries; gray, age boundaries. All silhouettes used in Figures 6-20 are the authors' own work.
FIGURE 9 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 9. Mysticeti stem and familial level diversity through time. "Cetotheriidae s.l." is a paraphyletic group including all taxa that belong to crown Mysticeti but are not grouped with any of the four living families. Dashed vertical lines: black, epoch boundaries; gray, age boundaries.
FIGURE 2 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 2. Anatomical features associated with biting (pierce, grip-and-tear, and crushing) feeding. 1: Crushing in sea otter (Enhydra lutris skull, from Lawlor, 1979), 2: Grip-and-tear in leopard seal (Hydruga leptonyx skull, authors' work), 3: Pierce in Southern sea lion, (Otaria byronia skull, authors' work) and in Amazon river dolphin (Inia geoffrensis skull, authors' work).
FIGURE 12 in Feeding in marine mammals: An integration of evolution and ecology through time
FIGURE 12. Hypothesized ecological replacement of desmostylians (circles) by sirenians (squares) in the North Pacific Ocean. On the top, map of the localities of Tortonian age (11 Ma) where desmostylian and sirenian were recorded. On the bottom, map of the localities of Zanclean age (5 Ma) where sirenians were recorded. Desmostylia disappear from the fossil record by the end of the Tortonian (7.2 Ma) when sirenians, particularly Hydrodamalis spp., start colonizing this region, likely feeding on the same resources. Only one occurrence per genus is reported in each locality. Locality data for each occurrence of Desmostylia and Sirenia in the Tortonian and Zanclean were downloaded from PBDB (https://paleobiodb.org) using the search parameters described in Materials and Methods and then plotted on the map.
Supplementary material 1 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
: Data type: (phylogenetic trees/neighbour nets)
Figure 9 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 9 Morphological features of P.alobata, mounted in KOH and macroscopically. A, B basidiospores in frontal face (O F110315) C, D in lateral face (O F110316) E subicular hyphae (TU 115626) F mature basidiome (holotype).
Figure 8 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 8 Micromorphological features of P.alnophila in KOH. Holotype: A, B, C basidiospores in frontal face D, E in lateral face E subicular hyphae.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.