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92
datasets available to search
ShareScore release 0.9.0
Dataset results
92 results for “genomic data integration”
Integrative genome-wide DNA methylome and transcriptome data reveals key genes involved in the dysregulation of adipose-stem cells linked to Crohn’s disease [Array]
GEO Series GSE217124. Homo sapiens. 25 samples. Type: Methylation profiling by genome tiling array.
Integrated genomics approach to detect allelic imbalances in multiple myeloma, SNP data
GEO Series GSE16121. Homo sapiens. 45 samples. Type: Genome variation profiling by SNP array.
Global transcript structure resolution of high gene density genomes through multi-platform data integration: Iso-Seq
GEO Series GSE79335. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing; Other.
Integrative genome-wide DNA methylome and transcriptome data reveals key genes involved in the dysregulation of adipose-stem cells linked to Crohn’s disease [RNA-seq]
GEO Series GSE217163. Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing.
Integrative genome-wide DNA methylome and transcriptome data reveals key genes involved in the dysregulation of adipose-stem cells linked to Crohn’s disease
GEO Series GSE217164. Homo sapiens. 53 samples. Type: Methylation profiling by genome tiling array; Expression profiling by high throughput sequencing.
Integrating multi-omics data with genome scale metabolic modeling for the analysis of Pseudomonas aeruginosa persister cells
GEO Series GSE185914. Pseudomonas aeruginosa. 45 samples. Type: Expression profiling by high throughput sequencing.
Integration of genomic and clinical data to predict endometrioid endometrial cancer recurrence
GEO Series GSE216872. Homo sapiens. 61 samples. Type: Expression profiling by high throughput sequencing.
Genomic and transcriptomic data integration and its automated analysis in clear-cell renal cell carcinoma suggests population heterogeneity of causes and mechanism of the disease
GEO Series GSE76351. Homo sapiens. 24 samples. Type: Expression profiling by array.
Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
The goal of this study is to contribute clinical and genomic data from a large institutional cohort of pediatric cancer patients who had tumor genomic profiling between 2013 and 2019 at Dana-Farber/Boston Children's Hospital Cancer and Blood Disorders Center. Clinical data include demographics, diagnosis (classified according to the International Classification of Diseases for Oncology (ICD-O-3.2), stage, and biospecimen associated data. Tumors were sequenced with OncoPanel, a targeted next-generation DNA sequencing panel of up to 447 cancer genes for detection of single-nucleotide variants (SNV), insertions, and deletions, and copy number alterations (CNA), as well as selected intronic regions for up to 60 genes for the detection of structural variants (SV). This dataset includes a patient and sample identifier (GENIE ID) that can be used to link the genomic data included in this dataset to additional longitudinal clinical cancer data on a subset of patients that was submitted to the National Childhood Cancer Registry (NCCR).
Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
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Childhood Cancer Data Initiative (CCDI): Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
The goal of this study is to contribute clinical and genomic data from a large institutional cohort of pediatric cancer patients who had tumor genomic profiling between 2013 and 2019 at Dana-Farber/Boston Children's Hospital Cancer and Blood Disorders Center. Clinical data include demographics, diagnosis, stage, and biospecimen associated data. Tumors were sequenced with OncoPanel, a targeted next-generation DNA sequencing panel of up to 447 cancer genes for detection of single-nucleotide variants (SNV), insertions, and deletions, and copy number alterations (CNA), as well as selected intronic regions for up to 60 genes for the detection of structural variants (SV).
Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
Open the record for dataset details and reuse information.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.