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1,930 results for “matrix”
A new and highly robust light-responsive Azo-UiO-66 for highly selective and low energy post-combustion CO2 capture and its application in a mixed matrix membrane for CO2/N2 separation
<p>Supporting information for publication in Journal of Materials Chemistry A, <a href="https://dx.doi.org/10.1039/C8TA03553A">https://dx.doi.org/10.1039/C8TA03553A </a></p>
A guide to using a multiple-matrix animal model to disentangle genetic and nongenetic causes of phenotypic variance
<p>Simulated data associated with the paper "A guide to using a multiple-matrix animal model to disentangle genetic and nongenetic causes of phenotypic variance".</p> <p>The main dataset is contained within the mermaids.csv, with columns explained within the associated README file. Epigenetic and social network information are contained within the other two datasets</p>
Investigation of Azo-COP-2 as a photo-responsive low-energy CO2 adsorbent and porous filler in mixed matrix membranes for CO2/N2 separation
<p>Dataset supporting publication. All raw data for figures is included in the Excel file, and the full high-resolution SEM images are included in this repository.</p> <p>A preprint of the manuscript is available from <a href="https://doi.org/10.26434/chemrxiv.7593902">https://doi.org/10.26434/chemrxiv.7593902</a> </p> <p>The published paper is: Siyao Li, Nicholaus Prasetya, and Bradley P Ladewig, <em>Ind. Eng. Chem. Res.</em>, Just Accepted Manuscript<br> DOI: <a href="https://doi.org/10.1021/acs.iecr.9b00762">https://doi.org/10.1021/acs.iecr.9b00762</a></p>
Morphological matrix in NEXUS format - from Klopfstein & Spasejovic, Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix
<p>Morphological matrix in NEXUS format - from Klopfstein & Spasejovic, Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological Matrix. Preprint published in bioRxiv (doi: https://doi.org/10.1101/425090 ).</p>
Dataset: Phylogenetic matrix: A new myromecophilic spider from the Chihuahuan desert
<p>Dataset: Phylogenetic matrix: A new myromecophilic spider from the Chihuahuan desert</p> <p>combined.nex.txt: MrBayes Nexus data matrix of DNA and morphology combined.</p> <p>morphology.tnt.txt: TNT data matrix of the morphology partition.</p>
DNA sequences alignements for 27 species of ticks (SCO50 matrix)
<p>The two files contain respectively the concatenation of DNA sequences alignements for 27 species of ticks (SCO50 matrix, n=952 genes) and to the partition file indicating the positions of each gene in the concatenation.</p> <p>The data set corresponds to the article "A transcriptome-based phylogenetic study of hard ticks (Ixodidae)" to be published in Scientific Reports, by N Pierre Charrier, Axelle Hermouet, Caroline Hervet, Albert Agoulon,<br> Stephen Barker, Dieter Heylen, Céline Toty, Karen McCoy, Olivier Plantard, Claude Rispe.</p>
InMAP Source-Receptor Matrix (ISRM) dataset
<p>The InMAP Source-Receptor Matrix (ISRM) estimates the air quality impacts of emissions released from any source location in the contiguous United States to any receptor location. Specifically, the values in the ISRM dataset are the change in PM<sub>2.5</sub> concentration (µg m<sup>-3</sup>) in any receptor grid cell per unit of emissions (µg sec<sup>-1</sup>) in any source grid cell. ISRM was created from repeated runs of the Intervention Model for Air Pollution (<a href="http://spatialmodel.com/inmap/">InMAP</a>), isolating the impact of emissions from every grid cell in InMAP and from three emission heights representing ground-level, low-stack, and high-stack emissions. A file of the marginal impacts of emissions from each source location is also included ("marginal_values.csv"), which summarizes the estimates in ISRM by each source grid cell in terms of monetary damages ($ tonne<sup>-1</sup>), increased mortality (deaths tonne<sup>-1</sup>), and population exposure (population*µg m<sup>-3</sup> tonne<sup>-1</sup>).</p> <p>**This is an updated dataset from a previous version. The "marginal_values" file has been updated. The S-R matrix (isrm_v1.2.1) is the original file.</p>
Determining the Complex Jones Matrix Elements of a Chiral 3D Optical Metamaterial
<p><strong>Research Data supporting “</strong><strong>Determining the Complex Jones Matrix Elements of a Chiral 3D Optical Metamaterial</strong><strong>”</strong></p> <p>original research article published in: <strong><em>APL Photonics</em></strong><strong> 2019</strong>, <strong>4</strong> (12), <a href="http://dx.doi.org/10.1063/1.5127169">http://dx.doi.org/10.1063/1.5127169</a></p> <p>The data of the dataset is arranged into different folders (.zip file), containing the following files (.txt, .tif files; <em>italics</em>). This data and the descriptions below should be read in conjunction with the manuscript and “Supporting Info”, both of which may be found at the following DOI: <a href="http://dx.doi.org/10.1063/1.5127169">http://dx.doi.org/10.1063/1.5127169</a></p>
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group. in Distribution of extracellular enzyme-producing bacteria in the digestive tracts of 4 brackish water fish species
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group.
Text-fig. 5. Scattered valves of Aulacoseira distans (EHRENBERG) SIMONSEN 1979, cracked valves of Ellerbeckia arenaria (MOORE) CRAWFORD 1988 and Tetracyclus ellipticus (EHRENBERG) GRUNOW 1862 as well as broken scleres of freshwater sponges (on the right hand) are lying in a clayish matrix. SEM-photograph, sample Sf 380, seam 4. in Siliceous Microfossils From The Oligocene Tripoli-Deposit Of Seifhennersdorf
Text-fig. 5. Scattered valves of Aulacoseira distans (EHRENBERG) SIMONSEN 1979, cracked valves of Ellerbeckia arenaria (MOORE) CRAWFORD 1988 and Tetracyclus ellipticus (EHRENBERG) GRUNOW 1862 as well as broken scleres of freshwater sponges (on the right hand) are lying in a clayish matrix. SEM-photograph, sample Sf 380, seam 4.
Text-fig. 2. Cracked chrysophycean-cysts and nest-like accumulation of the pennate diatom Gomphonema bohemicum REICHELT et FRICKE 1902 embedded in a bituminous and clayish matrix, SEM-photograph, sample Sf (no number), seam 1 roof. in Siliceous Microfossils From The Oligocene Tripoli-Deposit Of Seifhennersdorf
Text-fig. 2. Cracked chrysophycean-cysts and nest-like accumulation of the pennate diatom Gomphonema bohemicum REICHELT et FRICKE 1902 embedded in a bituminous and clayish matrix, SEM-photograph, sample Sf (no number), seam 1 roof.
Fig. 3 in Composition and structure of the helminth community of rodents in matrix habitat areas of the Atlantic forest of southeastern Brazil
Fig. 3. Bipartite plot of the interactions between the mammal hosts and the helminth parasites identified in the present study.
Fig. 2 in Composition and structure of the helminth community of rodents in matrix habitat areas of the Atlantic forest of southeastern Brazil
Fig. 2. Species accumulation curve of the helminths recorded in each mammalian host: a. Akodon cursor b. Mus musculus c. Necromys lasiurus.
Fig. 1 in Composition and structure of the helminth community of rodents in matrix habitat areas of the Atlantic forest of southeastern Brazil
Fig. 1. Location of the sampling sites within the REBIO Poço das Antas and the APA-BRSJ in Rio de Janeiro state (RJ), southeastern Brazil, showing the distribution of the different vegetation types and the canals that separate the two reserves.
Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue
<p>Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue. <span>scRNA-seq was performed using the droplet-based 10x Genomics platform</span><span> </span><span>(10x Genomics, Pleasanton, CA, USA)<span>. <span>GBM tissues for single-cell RNA sequencing (<a name="_Hlk147870629"></a>scRNA-seq)</span> were collected from patients admitted to Xiangya Hospital, Central South University.</span></span></p>
Curation of Vibrio biofilm matrix cluster and associated proteins
<p>The supplementary data and other supporting materials for the paper titled "Comprehensive Genomic and Evolutionary Analysis of Biofilm Matrix Clusters and Proteins in the <em>Vibrio </em>Genus".</p>
Matrix FFOCT Imaging of a Human Cornea.
<p>This video shows a volumetric visualization of a human cornea, obtained using full-field optical coherence tomography, without (left) and with (right) multi-scale correction of optical aberrations.</p> <p>Optical aberrations were estimated using a matrix approach of optical imaging, in a method described in the following article:<strong><br></strong></p> <p><em><a href="https://www.nature.com/articles/s41467-024-51619-9">Harnessing forward multiple scattering for optical imaging deep inside an opaque medium, Nature Commun., 15:7349 (2024)</a></em></p> <p><strong>Authors</strong>: Ulysse Najar , Victor Barolle , Paul Balondrade , Mathias Fink , Claude Boccara , Alexandre Aubry</p>
Morphological data matrix for extant and fossil Darwin wasps (Ichneumonidae)
<p>This nexus file contains morphological coding for 289 ichneumonid taxa, including 203 extant and 86 fossil taxa. The descriptions of the coded characters and their states can be found in the following list: <a href="https://doi.org/10.5281/zenodo.13912975" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13912975</a></p> <p>The Excel file shows a more detailed taxon list, including the fossil localities and age ranges for the included fossil taxa.</p> <p> </p> <p> </p>
Fingerprint Matrix Files for "Machine Learning-based Bioactivity Classification of Natural Products Using LC-MS/MS Metabolomics"
<p>These files are the necessary dataset to reproduce the observed machine learning metrics in the paper "Machine Learning-based Bioactivity Classification of Natural Products Using LC-MS/MS Metabolomics" in review at the Journal of Natural Products. </p> <ul> <li>Multiclassifier_23_Drug_Class_Train-Test_Fingerprint_Matrix.tsv is the accumulated positive training set for the 23 different classes demonstrated in the training and testing sets.</li> <li>Negative_Train-Test_Fingerprint_Matrix.tsv is the negatives training and testing examples derived from the RIKEN NP Depo which represent a diverse set of natural product compounds that serve as the counter points to the positive examples.</li> <li>GNPS_23_Drug_Class_Fingerprints_Matrix.tsv is the dataset of fingerprints generated from the publically available GNPS MSMS dataset. These training examples serve to confirm the ability of the machine learning model to generalize to experimental data. </li> <li> Negative_Train-Test_Fingerprint_Matrix.tsv is the dataset of negative training examples derived from the publically available spectra from the GNPS dataset. It is composed of nearly 2,800 random MSMS spectra to compose a diverse negative evaluation set. </li> <li>Random_GNPS_Fingerprints.tsv is the dataset of fingeprints of 9,443 random spectra from GNPS used to evaluate the false positive rate of each model.</li> </ul>
Linked collectors and determiners for: A matrix-based revision of the genus Hypogena Dejean, 1834 (Coleoptera Tenebrionidae).
Natural history specimen data linked to collectors and determiners held within, "A matrix-based revision of the genus Hypogena Dejean, 1834 (Coleoptera Tenebrionidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/9ee1348c-ac1e-4288-8d0a-f934b11d87d5">https://bionomia.net/dataset/9ee1348c-ac1e-4288-8d0a-f934b11d87d5</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/9ee1348c-ac1e-4288-8d0a-f934b11d87d5">https://gbif.org/dataset/9ee1348c-ac1e-4288-8d0a-f934b11d87d5</a>. Formatted as a Frictionless Data package.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.