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Figure 3 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes

Figure 3. The Bayesian phylogeny of the genus Talpa as inferred from the complete cytb gene sequence. The designations are as in Figure 3. The outgroup (representatives of the genera Euroscaptor, Mogera, Parascaptor, Scaptochirus and tribes Desmanini, Scalopini and Condylurini) is not shown.

Figure 4 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes

Figure 4. Species tree of Talpa produced by the *BEAST algorithm using the Bayesian multispecies coalescent approach. Values above the branches correspond to Bayesian posterior probabilities.

Figure 2 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes

Figure 2. The Bayesian phylogeny of the genus Talpa as inferred from a concatenated alignment of four nuclear genes. Values above the branches correspond to Bayesian posterior probabilities (BPP) in MrBayes and bootstrap support (1000 pseudoreplicates) in ML and MP analyses, correspondingly. Representatives of the genera Euroscaptor, Mogera, Parascaptor, Scaptochirus and tribes Desmanini, Scalopini and Condylurini are used as outgroups.

Figure 1 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes

Figure 1. Map of sampling localities for specimens of the genus Talpa used in this study. Localities 1–37 are listed in Table 1 (original material), localities 38–57 correspond to the sequences retrieved from GenBank and are listed in Supporting Information 1.

Figure 5 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes

Figure 5. Timescale of major divergence events among Talpa based on nuclear concatenation (BEAST). The divergence times correspond to the mean posterior estimate of their age in Myr. The grey bars represent the 95% HPD interval. Numbers above the branches correspond to posterior probabilities for each node.

Figure 5 in Mitochondrial DNA and other lines of evidence clarify species diversity in the Peromyscus truei species group (Cricetidae: Neotominae)

Figure 5: Geographic ranges of members of the Peromyscus truei species group showing taxonomic changes proposed in this work: (A) P. gratus (pink) and P. truei (green); (B) P. nasutus (green) and P. difficilis (pink); (C) P. laceianus (green) and P. pectoralis (pink); (D) P. attwateri (green) and P. ochraventer (pink). Lighter colors represent possible unrecognized taxa: we suggest recognizing the species P. amplus, P. collinus, and P. felipensis because their high mitochondrial divergence and its consistency with multiple lines of evidence previously reported; however, the specific status of the highly divergent P. cf. martirensis and P. cf. zapotecae should be tested with additional data. Maps modified from the IUCN.

Figure 4 in Mitochondrial DNA and other lines of evidence clarify species diversity in the Peromyscus truei species group (Cricetidae: Neotominae)

Figure 4: Haplotype networks based on the mitochondrial cyt b of sister species in the Peromyscus truei species group: (A) P. gratus (pink) + P. truei (green); (B) P. nasutus (green) + P. difficilis (pink); and (C) P. laceianus (green) + P. pectoralis (pink). In each case, lighter colors represent possible unrecognized taxa based on their high genetic divergence (see Figure 5 and discussion). The grey outlines show the 18 clades with intraspecific genetic

Figure 3 in Mitochondrial DNA and other lines of evidence clarify species diversity in the Peromyscus truei species group (Cricetidae: Neotominae)

Figure 3: Heat map showing genetic distances (K80) as % between the 18 clades with intraspecific genetic distances ≤1.5 in the Peromyscus truei species group. Genetic distances>4% are shown above the gray line, and values>5% above the black line. Clade labels on the x- and y-axes match those from Figure 2.

Figure 1 in Mitochondrial DNA and other lines of evidence clarify species diversity in the Peromyscus truei species group (Cricetidae: Neotominae)

Figure 1: Map of Mexico and the United States showing the localities of Peromyscus truei species group samples analyzed in this work.

Figure 2 in Mitochondrial DNA and other lines of evidence clarify species diversity in the Peromyscus truei species group (Cricetidae: Neotominae)

Figure 2: Phylogenetic relationships of members in the Peromyscus truei species group based on the mitochondrial cyt b. At the left the majority-rule consensus tree obtained from Bayesian analysis, and at the right the maximum-likelihood tree. Support values are shown as posterior probabilities and ultrafast bootstrap, respectively; values <0.8/94 are not shown. Green bars indicate the 18 clades with intraspecific genetic distances ≤1.5, and the asterisk show short sequences obtained from skin-clips. Tip labels show the catalog number of each analyzed specimen.