Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
117
datasets available to search
ShareScore release 0.7.1
Dataset results
117 results for “network inference”
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells [ATAC-seq]
GEO Series GSE113721. Mus musculus. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease
GEO Series GSE271788. Homo sapiens. 215 samples. Type: Other.
Coordination and interconnectivity in the inferred stress-activated signaling network from yeast
GEO Series GSE60613. Saccharomyces cerevisiae. 92 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
Lineage-Specific Differences and Inference of Regulatory Networks Governing Human Chondrocyte Development
GEO Series GSE195688. Homo sapiens; Mus musculus. 46 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Gene Regulatory Network inference in long-lived C. elegans reveals modular properties that are predictive of novel ageing genes
GEO Series GSE166512. Caenorhabditis elegans. 115 samples. Type: Expression profiling by high throughput sequencing.
Inferring Gene Regulatory Networks that control maintenance and identity of the Arabidopsis Root Stem Cells
GEO Series GSE97792. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing.
LASSIM -a network inference toolbox for genome-wide mechanistic modeling
GEO Series GSE60683. Homo sapiens. 70 samples. Type: Expression profiling by array.
Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface
GEO Series GSE87692. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference. [RNA-seq]
GEO Series GSE59059. Drosophila melanogaster. 80 samples. Type: Expression profiling by high throughput sequencing.
Species-specific transcriptomic network inference of interspecies interactions
GEO Series GSE113134. Thermosynechococcus vestitus BP-1; Meiothermus ruber. 20 samples. Type: Expression profiling by high throughput sequencing.
CellOracle: Dissecting cell identity via network inference and in silico gene perturbation
GEO Series GSE145298. Danio rerio; Mus musculus. 31 samples. Type: Expression profiling by high throughput sequencing.
Causal network inference from gene transcriptional time-series response to glucocorticoids [A549_OE]
GEO Series GSE144660. Homo sapiens. 163 samples. Type: Expression profiling by high throughput sequencing.
An Expression Atlas of Human Primary Cells: Inference of Gene Function from Coexpression Networks
GEO Series GSE49910. Homo sapiens. 46 samples. Type: Expression profiling by array; Third-party reanalysis.
Causal network inference from gene transcriptional time-series response to glucocorticoids [A549_dedex]
GEO Series GSE144662. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
CINS: Cell Interaction Network Inference from Single cell expression data in lungs of yound and aged mice
GEO Series GSE165638. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Structure primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference
GEO Series GSE218089. Saccharomyces cerevisiae. 3 samples. Type: Expression profiling by high throughput sequencing.
Inferring gene regulatory networks via transcriptional profiles as associated dynamical attractors
GEO Series GSE217461. Candida albicans. 51 samples. Type: Expression profiling by high throughput sequencing.
Inferring gene regulatory networks that control maintenance and identity of the Arabidopsis root stem cells
GEO Series GSE76710. Arabidopsis thaliana. 6 samples. Type: Expression profiling by array.
Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference
GEO Series GSE62558. Drosophila melanogaster. 82 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells
GEO Series GSE113723. Mus musculus. 132 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.