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SGS-LTER Long-Term Monitoring Project: Vegetation Cover on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/326/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/140/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83458. The abundance and diversity of small mammals in shortgrass steppe is strongly influenced by the structure and composition of vegetation. Vegetation structure provides cover from predators and harsh abiotic conditions. Plant species composition affects the types of seeds and herbaceous material available to granivores and herbivores, and influences arthropod populations, which are important prey for the omnivorous species that dominate in shortgrass steppe. Both vegetation structure and plant community composition are sensitive to the availability of precipitation as well as the activity of large mammalian herbivores. In 1999, we began measuring vegetation structure and p
SGS-LTER Long-term Monitoring Project: Spotlight Rabbit Count on the Central Plains Experimental Range, Nunn, Colorado, USA 1994-2006, ARS Study Number 98 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/327/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/136/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83448. Rabbits are the most important small-mammal herbivores in shortgrass steppe, and may significant influence the physiognomy and population dynamics of herbaceous plants and woody shrubs. Rabbits also are the most important prey of mammalian carnivores such as coyotes and large raptors such as golden eagles and great horned owls. Two hares (Lepus californicus, L. townsendii) and one cottontail rabbit (Sylvilagus audubonii) occur in shortgrass steppe. In 1994, we initiated long-term studies to track changes in relative abundance of rabbits on the Central Plains Experimental Range (CPER). On four nights each year (one night each season, usually on new moon nights in January,
SGS-LTER Long-Term Monitoring Project: Small Mammals on Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1994 -2006, ARS Study Number 118 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/329/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/137/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83452. Small mammals (rabbits, rodents) are integral components of semiarid ecosystems because of their roles as consumers of plants, seeds and arthropods, as soil disturbance agents, and as food for raptors, snakes and mammalian carnivores. Because of their vagility and intermediate trophic position, populations of small mammals may track changes in vegetation and the abiotic environment that may result from shifts in land-use and other anthropogenic disturbances. However, these populations are variable over space and time, and their response to environmental changes may not be immediately apparent given their behavioral flexibility and relatively long life-spans and generatio
SGS-LTER Ecosystem Stress Area - long-term density dataset following nutrient enrichment stress on the Central Plains Experimental Range in Nunn, Colorado, USA 1975-2011, ARS Study Number 3 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/330/3, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/520/8. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Water, nitrogen, and water-plus-nitrogen at levels beyond the range normally experience by shortgrass steppe communities were applied from 1971 through 1975, plant densities were sampled through 1977, and then sampling resumed in 1982, with sampling frequencies changing from annually to every other year. The initial sampling from 1970 to 1974 showed that the water and water plus nitrogen treatments had the strongest effect on plant community structure, both treatments increased biomass, and exotic weed species were noted on the water plus nitrogen treatment. Later sampling from 1982 to 1991 showed a ten-fold increase in exotic weed species on the water plus nitrogen plots as compared to the controls (Milchunas and Lauenroth 1995), a community change that has persiste
SGS-LTER Ecosystem Stress Area - long-term point-frame (percent basal cover) dataset following nutrient enrichment stress on the Central Plains Experimental Range in Nunn, Colorado, USA 1982-2011, ARS Study Number 3 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/331/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/521/7. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Water, nitrogen, and water-plus-nitrogen at levels beyond the range normally experience by shortgrass steppe communities were applied from 1971 through 1975, plant densities were sampled through 1977, and then sampling resumed in 1982, with sampling frequencies changing from annually to every other year. The initial sampling from 1970 to 1974 showed that the water and water plus nitrogen treatments had the strongest effect on plant community structure, both treatments increased biomass, and exotic weed species were noted on the water plus nitrogen treatment. Later sampling from 1982 to 1991 showed a ten-fold increase in exotic weed species on the water plus nitrogen plots as compared to the controls (Milchunas and Lauenroth 1995), a community change that has persiste
SGS-LTER Long-Term Montioring Project: Arthropod Pitfall Trapping on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1998-2006, ARS Study Number 118 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/328/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/134/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83450. With the exception of heteromyids, eg kangaroo rats and pocket mice, most small rodents in shortgrass steppe are omnivorous. Depending on season, arthropods (insects and arachnids) make up 40-85% of the diet of grasshopper mice and thirteen-lined ground squirrels, the most widespread rodents in northern shortgrass steppe. Small mammals are among the most important predators of ground-dwelling macroarthropods and herbivorous insects provide a direct resource link between weather and plant production. Understanding temporal variability in the abundance of arthropods is central to determining the mechanisms that drive small rodent populations. At present, there are no long-
Total numbers per square meter and taxa of insects taken from the Kuparuk River during the summer of 2001, Arctic LTER 2001.
A Surber sampler (25 X 25 cm frame fitted with a 243 um mesh net) was used to sample invertebrates at several different stations. Two replicates were taken from each station. The same sampling procedure was used for all dates. The stations were measured relative to the site of the dripper ("-" = upstream of the dripper). Samples were preserved in 4% formaldehyde and transported to Orono, Maine, where invertebrates were removed by hand under 15X magnification and then identified and counted. All values are converted to individuals per square meter.
Total numbers and species of insects taken from rock scrubbings during the summer of 1984-1988, 1993-1994, 1996-1998, in the Kuparuk River experimental reach near Toolik Field Station, North Slope Alaska..
A rock-scrubbing technique was used to collect bottom samples at several different stations with three replicates at each station in the Kuparuk River. The stations are measured relative to the 1984 phosphorus dripper. Only July sampling dates are included in this file (ACG). The samples were preserved in ethanol then picked, sorted, counted, and measured in Duluth using a NIKON MICRO-PLAN II digitizing pad.
Number of cyanobacteria in Toolik Lake at 1 meter depth during June, July and August 1996 , Arctic LTER, summer 1996.
Number of cyanobacteria in Toolik Lake at 1 meter depth during June, July and August 1996. Samples were transported to the Dept. of Fisheries and Oceans in West Vancouver, British Columbia, Canada for analysis.
Nematode total numbers in greenfall and litterfall exclusion quadrat treatments on canopy plots in 1998
Numbers of nematodes per gram dry weight of litter are reported from litterbags placed in quadrat treatment boxes on canopy gradient sites. Treatments for this project are greenfall exclusion and litterfall exclusion. See Reynolds 2000 dissertation, Effects of canopy herbivores on soil systems along an elevation gradient. All data are from collections made in 1998.
Handedness and Symbolic Number Representation
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Investigating the visual number form area: A replication study
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High MHC gene copy number maintains diversity despite homozygosity in a Critically Endangered single-island endemic bird, but no evidence of MHC-based mate choice
<p>Raw sequence data from two amplicon libraries of MHC class I exon 3 of Raso Lark <em>Alauda razae</em>, sequenced on an Illumina Miseq. The two different libraries (two different Illumina runs) are collected in separat tar archive (.tar). Within each of those are individual sequence reads as gzipped fastq files (.fastq.gz). Each sample has two files, one for read 1 (R1) and one for read 2 (R2), with file names structured as follows. Delimited by underscore (_) are:</p> <ol> <li>sample name as referred to in the data and paper (“RingNo” in the Supporting data table);</li> <li>formal ID (also referred to in data table, often corresponding to full ring number);</li> <li>Illumina sample number (i.e. based on the order that samples are listed in the sample sheet);</li> <li>Illumina lane number (static as L001, as Miseq instruments have a single lane on their flow cells);</li> <li>read number (R1 [forward] or R2 [reverse]);</li> <li>static identifier from Illumina (001).</li> </ol> <p>Thus, the file 83304_TJ83304_S163_L001_R2_001.fastq.gz is the reverse (read 2) MHC class I exon 3 sequence of individual 83304 (ring number TJ83304).</p>
Appendix 1 in Contribution to chromosome numbers and phylogeny of Turkish Vincetoxicum Wolf (Apocynaceae, Asclepiadoideae)
Appendix 1. Locality information, voucher specimens and accession numbers for sequences in GenBank (NCBI) of the examined specimens used for molecular (Mol.) and cytological (Cyt.) studies. Sequences previously published are indicated in brackets (A=Liede-Schumann et al. 2016, B=Liede- Schumann et al. 2012, C=Liede et al. 2002, D=Liede 2001, E=Berner & Carter Unpublished, F=Lahaye et al. 2005, G=Liede & Täuber 2002, H=Goyder et al. 2007, PS=present study).
Fig. 1 in Conserved number of U 2 snDNA sites in Piabina argentea, Piabarchus stramineus and two Bryconamericus species (Characidae, Stevardiinae)
Fig. 1. Sequential metaphases of the chromosomal locations of U2 snDNA and 5S rDNA clusters using two-color FISH in species of the genera Piabina, Piabarchus and Bryconamericus. The arrows indicate the fluorescent signals. Note that, in P. stramineus, the two repetitive DNA are located adjacently on the same pair. Scale bar = 10 µm.
Fig. 2 in Conserved number of U 2 snDNA sites in Piabina argentea, Piabarchus stramineus and two Bryconamericus species (Characidae, Stevardiinae)
Fig. 2. Scheme showing the number of U2 snDNA sites on the real pairs and ideograms in species of the genera Piabina, Piabarchus and Bryconamericus. Note the size heteromorphism of U2 snDNA clusters between homologous chromosomes in P. argentea.
GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication in Rediscovery of Andrea's keelback, Hebius andreae (Ziegler & Le, 2006): First country record for Laos and phylogenetic placement
GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication
OneDrive ZIP64 "total number of disks" equals 0 demo file
<p>This is a test file that demonstrates a problem with faulty large ZIP files that are generated by the Microsoft OneDrive web client. The value of the “total number of disks” field in the “zip64 end of central dir locator” for this file is set to 0 (zero). Since most reader tools expect a value of 1 for this field, this leads to various interoperability problems. A detailed discussion of this problem van be found in the following blog post:</p> <p><a href="https://www.bitsgalore.org/2020/03/11/does-microsoft-onedrive-export-large-ZIP-files-that-are-corrupt">Does Microsoft OneDrive export large ZIP files that are corrupt?</a></p> <p>The ZIP file contains five 1-GB files, each of which is made up of null-bytes only.</p>
Number of genes per function within mobile genetic elements in Martinez Arbas, Narayanasamy et. al. (2020)
<p>This repository contains a set of tables separated by COG functional categories and the type of mobile genetic element, i.e. phage or plasmid. Each table contains predicted gene functions for each COG category and information on protospacer-containing contigs (PSCCs) and non-PSCCs</p> <p>This repository is related to the work published in Martinez Arbas, Narayanasamy et. al. (2020).</p>
Appendix List of samples of deep frozen frog legs with purchase date, collection number, haplotype number, taxonomic identification, tibia length (TL) and estimated snout vent length (SVL). in Which frog's legs do froggies eat? The use of DNA barcoding for identification of deep frozen frog legs (Dicroglossidae, Amphibia) commercialized in France
Appendix List of samples of deep frozen frog legs with purchase date, collection number, haplotype number, taxonomic identification, tibia length (TL) and estimated snout vent length (SVL).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.