Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
88
datasets available to search
ShareScore release 0.9.0
Dataset results
88 results for “phylogenetic datasets”
Aligned LSU dataset and phylogenetic relationships of Tylopilus glutinosus
Open the record for dataset details and reuse information.
Generalized hidden Markov models for phylogenetic comparative datasets
Open the record for dataset details and reuse information.
The mitochondrial genome datasets of phylogenetic analysis from the subfamily Coelidiinae
Open the record for dataset details and reuse information.
FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis - Validation dataset
<p>This is dataset and analysis to regenerate results published in Molecular Ecology Resources</p>
Datasets and scripts related to the manuscript "What makes the diverse flight of birds possible? Phylogenetic comparative analysis of avian alula morphology"
<p>"alula_data187.csv" and "alula_data162.csv" include the two duck sister species, Anas platyrhynchos and A. poecilorhyncha. The former lacks the migratory distance, while the latter contains the variable.</p> <p>"alula_data185.csv" and "alula_data160.csv" are similar to "alula_data187.csv" and "alula_data162.csv", respectively, but exclude the two duck species.</p> <p>"alula_data151.csv" and "alula_data130.csv" are similar to "alula_data185.csv" and "alula_data160.csv", respectively, but further exclude species based on female specimens.</p> <p>"consensus187.tre" is the consensus tree used for the phylogenetic comparative analyses.</p> <p>"scripts.txt" includes two R scripts for (1) calculating the migratory distance and (2) the phylogenetic comparative analyses.</p>
Dataset for 'Phylogenetic Diversity vs H-Index – does genetics or culture lead conservation science?'
Open the record for dataset details and reuse information.
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 in Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 (cytochrome b) and node-calibrated using the fossil record.
Dataset for "Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities''
<p>The dataset was obtained with information from:</p> <ol> <li> <p>The National Land Cover Database (NLCD), free online available, and released by Dewitz and U.S. Geological Survey (2019) (<a href="https://www.usgs.gov/centers/eros/science/national-land-cover-database">https://www.usgs.gov/centers/eros/science/national-land-cover-database</a>)</p> </li> <li> <p>The North American Breeding Bird Survey Dataset, free online available, and released by Ziolkowski Jr. DJ, Lutmerding M, Aponte VI, and Hudson M-A R (2022) North American Breeding Bird Survey Dataset 1966 - 2021: U.S. Geological Survey data release (<a href="https://www.usgs.gov/centers/eesc/science/north-american-breeding-bird-survey">https://www.usgs.gov/centers/eesc/science/north-american-breeding-bird-survey</a>)</p> </li> <li> <p>The AVONET Dataset, published by Tobias JA, Sheard C, Pigot AL, Devenish AJM, Yang J, Sayol F et al. (2022) AVONET: morphological, ecological and geographical data or all birds. Ecology Letters, 25, 581– 597 (<a href="https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13898">https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13898</a>)</p> </li> <li> <p>Data on life history traits of birds, assembled by the hosting lab members (including myself)</p> </li> <li> <p>Maximum clade credibility phylogenies (CCP) based on the pseudo-posterior distribution of trees available at www.birdtree.org, developed by the hosting lab.</p> </li> </ol> <p>Data was extracted and structured to be used to reach the results from the manuscript "<strong>Spatiotemporal impacts of land conversion on avian functional and phylogenetic diversities</strong>". </p> <p>This manuscript is part of the second and fifth Working Packages (WP2 and WP5) of the project ENVIRON_CHANGE, financed by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101030199. The aim of the WP2 was to estimate changes in phylogenetic and functional diversities across land use change and describe its temporal dynamics. The WP5 was dedicated to disseminate and communicate the research.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.