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128
datasets available to search
ShareScore release 0.9.0
Dataset results
128 results for “plant virus”
Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect [sRNA-Seq]
GEO Series GSE113554. Nilaparvata lugens; Oryza sativa. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (RNA-Seq)
GEO Series GSE74497. Oryza sativa. 6 samples. Type: Expression profiling by high throughput sequencing.
Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)
GEO Series GSE74498. Oryza sativa. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Effect on tomato plants of asymptomatic infection with southern tomato virus
GEO Series GSE137303. Solanum lycopersicum. 6 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks [severe_triple]
GEO Series GSE46758. Arabidopsis thaliana. 16 samples. Type: Expression profiling by array.
Activation of an endogenous pararetrovirus, petunia vein clearing virus, during long-term cultivation of host plants is associated with disturbance of star-type floral color pattern in Petunia hybrida
GEO Series GSE145373. Petunia x hybrida. 6 samples. Type: Expression profiling by high throughput sequencing.
Transgenerational tolerance to abiotic stresses induced by plant virus infection
GEO Series GSE214636. Nicotiana benthamiana. 12 samples. Type: Expression profiling by high throughput sequencing.
Plant virus diversity in invasive weeds and crop plant varying between plant species and management systems
GEO Series GSE132755. Medicago sativa; Erigeron annuus; Solanum tuberosum; Erigeron canadensis; Zea mays; Solidago canadensis. 6 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks
GEO Series GSE46760. Arabidopsis thaliana. 61 samples. Type: Expression profiling by array.
Virus-mediated export of chromosomal DNA in plants
GEO Series GSE114958. Beta vulgaris; Arabidopsis thaliana. 4 samples. Type: Other.
High-throughput pyrosequencing of plant virus small RNAs
GEO Series GSE16996. Tomato yellow leaf curl virus; Cymbidium ringspot virus; Pepper mild mottle virus; Melon necrotic spot virus; Potato virus X; Turnip mosaic virus; Cucumber mosaic virus; Tobacco rattle virus; Watermelon mosaic virus. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Early response of potato plants to virus (PVY-NTN) inoculation
GEO Series GSE10903. Solanum tuberosum. 4 samples. Type: Expression profiling by array.
Quantitative transcriptional changes associated with chlorosis severity in mosaic leaves of tobacco plants infected with the Cucumber mosaic virus
GEO Series GSE47410. Nicotiana tabacum. 12 samples. Type: Expression profiling by array.
Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks [triple_wdh]
GEO Series GSE46759. Arabidopsis thaliana. 13 samples. Type: Expression profiling by array.
Data from: Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon
In eukaryotes, alternative splicing (AS) promotes transcriptome and proteome diversity. The extent of genome-wide AS changes occurring during a plant-microbe interaction is largely unknown. Here, using high-throughput, paired-end RNA sequencing, we generated an isoform-level spliceome map of Brachypodium distachyon infected with Panicum mosaic virus and its satellite virus. Overall, we detected ∼44,443 transcripts in B. distachyon, ∼30% more than those annotated in the reference genome. Expression of ∼28,900 transcripts was ≥2 fragments per kilobase of transcript per million mapped fragments, and ∼42% of multi-exonic genes were alternatively spliced. Comparative analysis of AS patterns in B. distachyon, rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolor), Arabidopsis thaliana, potato (Solanum tuberosum), Medicago truncatula, and poplar (Populus trichocarpa) revealed conserved ratios of the AS types between monocots and dicots. Virus infection quantitatively altered AS events in Brachypodium with little effect on the AS ratios. We discovered AS events for >100 immune-related genes encoding receptor-like kinases, NB-LRR resistance proteins, transcription factors, RNA silencing, and splicing-associated proteins. Cloning and molecular characterization of SCL33, a serine/arginine-rich splicing factor, identified multiple novel intron-retaining splice variants that are developmentally regulated and modulated during virus infection. B. distachyon SCL33 splicing patterns are also strikingly conserved compared with a distant Arabidopsis SCL33 ortholog. This analysis provides new insights into AS landscapes conserved among monocots and dicots and uncovered AS events in plant defense-related genes.
Immunogenicity, Safety, Tolerability of a Plant-made H5 Virus-like-particle (VLP) Influenza Vaccine.
ClinicalTrials.gov study NCT01991561. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Safety, Tolerability and Immunogenicity of a Plant-made H7 Virus-like Particle (VLP) Influenza Vaccine in Adults.
ClinicalTrials.gov study NCT02022163. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Sugarcane streak mosaic virus P1 protein targets the BES1 transcription factor to subvert DAMP-induced immunity in plant
GEO Series GSE297661. Saccharum officinarum. 6 samples. Type: Expression profiling by high throughput sequencing.
Data from: Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon
Open the record for dataset details and reuse information.
Transcriptomic analysis of Nicotiana benthamiana plants infected with a plum pox virus (PPV) deletion mutant (P1Pro) that lacks the self-cleavage inhibitory domain of the P1 leader protease
GEO Series GSE146746. Nicotiana benthamiana. 9 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.