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487 results for “population differences”
Genomic analyses of phenotypic differences between native and invasive populations of diffuse knapweed (Centaurea diffusa)
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Two-sex integrated population model reveals intersexual differences in life history strategies in Cooper’s Hawks
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Data from: Different strokes for different croaks: Using an African reed frog species complex as a model to understand idiosyncratic population requirements for conservation management
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Whole-genome analysis of multiple wood ant population pairs supports similar speciation histories, but different degrees of gene flow, across their European ranges
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Euphagus carolinus (Rusty Blackbird) from two different breeding populations in northeastern North America exhibit chain migration yet use the same region for stopover
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Multilevel selection on social network traits differs between sexes in experimental populations of forked fungus beetles
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Data from: Female African elephant rumbles differ between populations and sympatric social groups
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Data from: Same trait, different genes: pelvic spine loss in three brook stickleback populations in Alberta
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Data from: Intraspecific correlations between growth and defense vary with resource availability and differ within- and among-populations
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Data and coding files for: Within population plastic responses to combined thermal-nutritional stress differ from those in response to single stressors, and are genetically independent across traits in both males and females
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Demographic measures of Hypericum cumulicola (Hypericaceae) in 15 populations in Florida Rosemary Scrub patches with different time-since-fire, at Archbold Biological Station, Highlands County, Florida from 1994-2015
We collected demographic data comprising 38,313 unique observations from a sample of 10,910 individuals of H. cumulicola, from 15 independent Florida rosemary scrub patches with different time-since-fire at Archbold Biological Station, Highlands County, Florida. Plants were censused during their peak of reproduction annually in July and August between 1994 and 2015.
Personality driven life-history trade-offs differ in two sub-populations of free ranging predators
<p>1) Consistent individual differences in behaviour (i.e. personality) can be explained in an evolutionary context if they are favoured by life-history trade-offs as conceptualized in the pace-of-life syndrome (POLS) hypothesis. Theory predicts that faster growing individuals suffer higher mortality and that this trade-off is mediated through exploration/risk-taking personality, but empirical support for this remains limited and ambiguous. Equivocal support to the POLS hypothesis suggests that the link between life-history and personality may only emerge under certain circumstances. Understanding personality driven trade-offs would be facilitated by long-term studies in wild populations experiencing different ecological conditions.</p> <p>2) Here, we tested whether personality measured in semi-captivity was associated with a growth-mortality trade-off via risk-taking in the wild in two sub-populations of juvenile lemon sharks (Negaprion brevirostris) known to differ in their predator abundance. We expected stronger personality driven trade-offs in the predator-rich environment as compared to the predator-poor environment.</p> <p>3) Sharks were captured yearly from 1995 onwards allowing us to obtain long-term data on growth and apparent survival in each sub-population. We then used a novel open-field assay to test sharks for exploration personality yearly from 2012 to 2017. A subset of the tested sharks was monitored in the field using telemetry to document risk-taking behaviours. We tested (i) if fast explorers in captivity took more risks and grew faster in the wild and (ii) if natural selection acted against more explorative, faster growing sharks.</p> <p>4) In the sub-population with fewer predators, more explorative sharks in captivity took more risks in the wild and grew faster. In turn, larger, fast-growing sharks had lower apparent survival. In the predator-rich sub-population, despite finding selection on fast growth, we found no link between exploration personality and the growth-mortality trade-off.</p> <p>5) Our study demonstrates that the association between personality and life-history is favoured in some ecological contexts but not in others. We identify predator and resource abundance as two main potential drivers of the personality mediated trade-off and emphasize that future work on the POLS hypothesis would benefit from an approach integrating behaviour and life-history across ecological conditions.</p>
First come, first served: possible role for priority effects in marine populations under different degrees of dispersal potential
<p>Aim Studying clearly delineated populations in marine lakes, islands of sea, we investigate the interplay of habitat size, immigration, and priority effects in shaping marine population genetic structure. Location Marine lakes and coastal locations in Indonesia, Palau, Papua New-Guinea and Australia. Taxon Mussels (Mytillidae, Brachidontes spp.) Methods Populations were sampled from four coastal locations and 22 marine lakes of similar age (~8,000 years), yet differing in size (0.04 - 4.7 km2) and degree of connection to the adjacent sea. While some lakes are highly connected, allowing potential influx of larvae from the sea, others have very limited water exchange. We assessed the phylogeographic structure and demographic history using mitochondrial and nuclear DNA sequence data, and combined this with geometric morphometrics. The effects of lake characteristics on population genetic diversity and structure were tested using linear regression and Mantel tests. Results Each lake contained one of six distinct genetic lineages, which were characterized by deep phylogenetic splits and significant morphometric differences. These lineages likely represent separate species. The lineages showed similar demographic patterns, with lakes containing founder populations that rapidly expanded and diverged. Genetic diversity within lake populations was significantly correlated with lake area, but not with physical connection to the adjacent sea. Within lineages that occurred in multiple lakes there was strong population structure (average ΦST 0.65), which did not conform to an isolation-by-distance pattern or to the degree of dispersal potential. Main Conclusions Marine lakes across a gradient of physical isolation show strong population structure and evidence for in situ divergence. We hypothesize that the observed genetic structure is the result of priority effects. In addition, reduction of habitat size appears to reduce genetic diversity, even at very small spatial scales. Our findings are relevant in the context of ongoing alterations to coastal hydrodynamics, which lead to habitat reduction and influence migration among populations at fine spatial scales.</p>
Data from: Contrasting population structure and demographic history of cereal aphids in different environmental and agricultural landscapes
<p>Single Nucleotide Polymorphisms files and phylogonetic trees of S. miscanthi samples collected in China and S. avenae from the UK used to study the population genetics analyses of these species. These are:</p> <p>China_samples_vcf.zip: dataset of SNPs from S. miscanthi sampled in 10 populations of China obtained using FreeBayes (in vcf format).</p> <p>China_samples_vcf_filtered.zip: SNPs from S. miscanthi after filtering the file China_samples_vcf.zip using vcftools (max-missing 0.75, minDP 3, mac 3, minQ 30, remove-indels, thin 2000, max-missing 0.9, thin 5000). This file was used in all population genetic analyses of the Chinese populations in the paper, transforming to the appropriate formats.</p> <p>China_samples_SNPs.fas: fasta file of phased SNPs used to estimate the phylogeny of S. miscanthi haplotypes using RAxML.</p> <p>China_RAxML_phylogeny_newick.tre: RAxML phylogenetic tree in newick format obtained with China_samples_SNPs.fas.</p> <p>England_samples_vcf.zip: dataset of SNPs from S. avenae sampled in 12 populations of England obtained using FreeBayes (in vcf format).</p> <p>England_samples_vcf_filtered.zip: SNPs from S. avenae after filtering the file England_samples_vcf.zip using vcftools (max-missing 0.5, mac 3, minQ 30, minDP 3, max-missing 0.5, exclude individuals with 50% missing data, max-missing 0.75, remove-indels, thin 2000). This file was used in all population genetic analyses of the English populations in the paper, transforming the vcf to the corresponding formats.</p> <p>England_samples_SNPs.fas: fasta file of phased SNPs.</p> <p>England_samples_SNPs_polymorphic.fas: fasta file of phased SNPs used in the phylogenetic reconstruction of S. avenae haplotypes using RAxML. This file is the same as England_samples_SNPs.fas after removing sites which were not polymorphic (e.g. a site that contains N and T in different samples is not considered polymorphic for RAxML and has to be removed)</p> <p>England_RAxML_phylogeny_newick.tre: RAxML phylogenetic tree in newick format obtained with England_samples_SNPs_polymorphic.fas.</p>
Testing for population differences in evolutionary responses to pesticide pollution in brown trout (Salmo trutta)
<p>Pesticides are often toxic to non-target organisms, especially to those living in rivers that drain agricultural land. The brown trout (<i>Salmo trutta</i>) is a keystone species in many such rivers, and natural populations have hence been chronically exposed to pesticides over multiple generations. The introduction of pesticides decades ago could have induced evolutionary responses within these populations. Such a response would be predicted to reduce the toxicity over time but also deplete any additive genetic variance for the tolerance to the pesticides. If so, populations are now expected to differ in their susceptibility and in the variance for the tolerance depending on the pesticides they have been exposed to. We sampled breeders from seven natural populations that differ in their habitats and that show significant genetic differentiation. We stripped them for their gametes and produced 118 families by <i>in vitro</i> fertilization. We then raised 20 embryos per family singly in experimentally controlled conditions and exposed them to one of two ecologically relevant concentrations of either the herbicide S-metolachlor or the insecticide diazinon. Both pesticides affected embryo and larval development at all concentrations. We found no statistically significant additive genetic variance for tolerance to these stressors within or between populations. Tolerance to the pesticides could also not be linked to variation in carotenoid content of the eggs. However, pesticide tolerance was linked to egg size, with smaller eggs being more tolerant to the pesticides than larger eggs. We conclude that an evolutionary response to these pesticides is currently unlikely, and that (i) continuous selection in the past has either depleted genetic variance in all the populations we studied, or (ii) that exposure to the pesticides never induced an evolutionary response. The observed toxicity selects against large eggs that are typically spawned by larger and older females.</p>
Data from: Evaluating shell variation across different populations of a freshwater snail
The freshwater snail Potamopyrgus antipodarum has become a model system for studying invasion ecology, host–parasite coevolution, the maintenance of sexual reproduction and ecotoxicology. One understudied aspect of this snail is the variation in morphology within and among populations, which could provide insights into ecological differences across its native range. In this study of 17 New Zealand lake populations of P. antipodarum we used linear measurements and geometric morphometrics to compare several aspects of shell size and shape. We found that, except for those from Lake Te Anau, most lake populations of P. antipodarum differ slightly in shape, but differ significantly in size and in the presence of spines, where larger and spinier snails are found in deeper regions. These striking distinctions in size and shell armature, but not in shape, suggest that the various components of form are under different selective regimes. Snails from Lake Te Anau are different in both shape and size, implying that this population is diverging from the rest of the species in multiple ways, making it an interesting study population for further research.
Data from: Trait responses to AM fungi are stronger and more consistent than fixed differences among populations of Asclepias speciosa
Premise of the study: Arbuscular mycorrhizal (AM) fungi can promote plant growth and reproduction, but other plant physiological traits or traits that provide defense against herbivores can also be affected by AM fungi. However, whether responses of different traits to AM fungi are correlated, and whether these relationships vary among plants from different populations is unresolved. Methods: We assessed whether different populations of the perennial forb, Asclepias speciosa, grown from seed collected from different environmental conditions across its distributional range respond differently to AM fungi, and if the responses of six growth and defense traits are correlated. Key Results: Although there was strong genetic differentiation in mean trait values among populations, AM fungi consistently increased expression of most growth and defense traits across all populations. Responses of biomass and root:shoot ratio to AM fungi were positively correlated, suggesting that plants that are more responsive to AM fungi allocated more biomass belowground. Responses of biomass and trichome density to AM fungi were negatively correlated, indicating a trade-off in responsiveness between a growth and defensive trait. Conclusions: Our results suggest that while there is substantial population differentiation in many traits of A. speciosa, populations respond similarly to AM fungi, and both positive and negative correlations among trait responses occur.
Data from: Evidence of stress imprinting with population-level differences in two moss species
Plants are often repeatedly exposed to stresses during their lives and have a mechanism called stress imprinting that provides 'memories' of stresses they experience and increases their ability to cope with later stresses. To test hypotheses that primed bryophytes can preserve their stress imprinting after 6 days of recovery and induce higher levels of osmolytes and ROS-scavenging activities upon later stress exposure, and there exist population-level differentiation in their desiccation defenses, we transplanted samples of two populations of each of two moss species, Hypnum plumaeforme and Pogonatum cirratum, in a nature reserve in southern China. After 16 months of acclimation, sets of each population were subjected to control, one-time desiccation stress, duplicated desiccation stress and cross-stress (low temperature stress followed by desiccation stress) treatments. Levels of oxidant enzymes, osmolytes and phytohormones in the samples were then determined. The desiccation stress generally led to increases in activities or contents of superoxide dismutase, guaiacol peroxidase, catalase, proline, soluble sugars, soluble proteins, and stress hormones including abscisic acid (ABA), jasmonates (JA) and salicylic acid (SA), with differences between both species and populations. After a 6-day recovery period, contents of phytohormones (including ABA, JA, SA and cytokinins) in stressed H. plumaeforme had substantially fallen towards control levels. The duplicated and cross-stress treatments generally led to further accumulation of proline, soluble sugars and soluble proteins, with further increases in activities of antioxidant enzymes in some cases. Furthermore, significant differences between allochthonous and native populations were found in contents of malondialdehyde and osmolytes, as well as antioxidant enzyme activities. Our results confirm the hypotheses, and highlight the importance of osmolytes in mosses' stress responses.
Data from: The contribution of carbon budget to masting intervals in Veratrum album populations inhabiting different elevations
<p><strong>Premise</strong><strong>: </strong>Mast flowering/seeding is often more extreme in lower-resource environments, such as alpine compared to lowland habitats. We studied a masting herb which had less extreme masting at higher elevations, and tested if this difference could be explained by higher photosynthetic productivity and/or lower reproductive investment at the higher elevation sites.</p> <p><strong>Methods: </strong>We examined the relationship between flowering intervals and carbon budget (i.e., the balance between reproductive investment and annual carbon fixation) in a masting herb, <em>Veratrum album</em> subsp. <em>oxysepalum</em>, across five lowland and six alpine populations in northern Japan. We evaluated the previous flowering histories of individual plants based on rhizome morphology and analyzed the masting patterns of individual populations. Total mass of the reproductive organs, as a proxy of reproductive investment, was compared between the lowland and alpine populations. Annual carbon fixation was estimated based on photosynthetic capacity, total leaf area per plant, and seasonal transition of light availability.</p> <p><strong>Results: </strong>Interval between high-flowering years was shorter and total reproductive investment was smaller in the alpine than in the lowland populations. Owing to its high photosynthetic capacity and continuous bright conditions, annual carbon fixation per plant was 1.5 times greater at the alpine habitat than at the lowland habitat. These results suggest that <em>V. album</em> alpine populations have shorter flowering intervals than lowland populations due to faster recovery from energy loss after reproduction.</p> <p><strong>Conclusions: </strong>Our study demonstrated that masting intervals in <em>V. album</em> populations can be explained by habitat-specific carbon budget balances.</p>
Data from: genetic evidence of differential dispersal pattern in Asiatic wild dog: comparing populations with different pack size and tiger densities
<p><span>Dispersal is a multi-causal, crucial life-history event in shaping the genetic and behavioral structure of mammals. We assessed the dispersal pattern of dholes aka Asiatic wild dog (<em>Cuon alpinus</em>), a social monogamous mammal at two tiger reserves of Maharashtra with different degrees of pack size and competition with tigers i.e. Tadoba-Andhari (TATR, smaller pack size, higher tiger density) and Nawegaon-Nagzira (NNTR, larger pack size, lower tiger density). We used the microsatellite data of 174 individual genotypes (98 males and 67 females) to assess the dispersal pattern of dholes from two populations with varying pack size, tiger density, and landscape connectivity using gene flow as a proxy. We compared the population structure, pairwise F statistics, assignment index, and relatedness across a spatial scale. Overall, the results suggested a difference in sex-bias dispersal pattern for the two sub-populations, exhibiting significant results for female-biased dispersal in the TATR population with a smaller pack size and higher tiger density. Our study highlights the variability in sex-biased dispersal patterns in two different populations which could be the consequence of different variables such as pack size, tiger density, and geographical scale. The study warrants further quantitative investigation including several factors including individual behavior, pack composition, pack size, tiger density, etc. In the present Anthropocene era, determining the sex bias in dispersal patterns for a short-range, pack-living carnivore will help in devising an effective conservation management plan for their long-term survival.</span></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.