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440 results for “potato”
Utilizing traditional and remote sensing techniques to assess Colorado potato beetle host preference in the Columbia Basin -- Derived data 2020 & 2021
<p>This is derived data from a remote sensing experiment performed in 2020 and 2021. This repository contains .csv and .R files that can be used to replicate the analysis presented here:</p> <p><a href="https://zenodo.org/record/6859791#.Y-K6ky-B1z8">https://zenodo.org/record/6859791#.Y-K6ky-B1z8</a></p> <p>If you have any questions or comments regarding this dataset please contact Dr. Max Feldman via email: max.feldman@usda.gov</p>
Utilizing traditional and remote sensing techniques to assess Colorado potato beetle host preference in the Columbia Basin -- 2020 Data
<p>This is a remote sensing dataset collected in 2020 that contains orthomosaic images, shape files, analysis scripts, and derived numerical data from each plot. Data was collected using the protocol described here:</p> <p><a href="https://www.protocols.io/view/usda-ars-potato-genetics-lab-drone-data-collection-bp2l6148dvqe/v1">https://www.protocols.io/view/usda-ars-potato-genetics-lab-drone-data-collection-bp2l6148dvqe/v1</a></p> <p>Provided are "field map" files that denote the location and contents of each plot, a folder from each date that contains the 5 band orthomosiac, surface model image, a cropped and rotated image, shape files indicating the location of each plot, and derived data. The analysis can be replicated by following along with workflow listed in file named: rondon_cpb_2020.R. Derived data from this experiment can be found it the file named: "Rondon_CPB_data_2020_UAS_all.csv"<br> <br> If you have any questions or comments regarding this dataset please contact Dr. Max Feldman via email: max.feldman@usda.gov</p>
Potato Leaf data set
<p>A Collection of potato images. Some with manual annotation of leaf areas in .json format. Some with physically measured leaf area and leaf biomass measurements contained in the csv file.</p> <p>pot_data_withimgnames_fullset.csv contains information about which plants correspond to which images and the physical ground truth data. </p> <p>Full details of data gathering can be seen in paper <a href="https://arxiv.org/abs/2305.09418">here</a>. Please cite the paper if you use our data.</p>
Potato super pangenome v1.0
<p><span class="ui-provider km b c d e f g h i j k l m n o p q r s t u v w x y z ab ac ae af ag ah ai aj ak">Potato (<em>Solanum sp</em>., family Solanaceae) is the most important noncereal food crop globally. It has over 100 wild relatives in the <em>Solanum</em> section <em>Petota</em>, which features species with both sexual and asexual reproduction and varying ploidy levels. A pangenome of <em>Solanum</em> section <em>Petota</em> composed of 296 accessions was constructed including diploids and polyploids compared via presence/absence variation (PAV). The <em>Petota</em> core (genes shared by at least 97% of the accessions) and shell genomes (shared by 3 to 97%) are enriched in basic molecular and cellular functions, while the cloud genome (genes present in less than 3% of the member accessions) showed enrichment in transposable elements (TEs). Comparison of PAV in domesticated vs. wild accessions was made, and a phylogenetic tree was constructed based on PAVs, grouping accessions into different clades, similar to previous phylogenies produced using DNA markers. A cladewise pangenome approach identified abiotic stress response among the core genes in clade 1+2 and clade 3, and flowering/tuberization among the core genes in clade 4. The TE content differed between the clades, with clade 1+2, which is composed of species from North and Central America with reproductive isolation from species in other clades, having much lower TE content compared to other clades. In contrast, accessions with in vitro propagation history were identified and found to have high levels of TEs. Results indicate a role for TEs in adaptation to new environments, both natural and artificial, for <em>Solanum</em> section <em>Petota</em>.</span></p>
Potato Research for Enhancing Metabolic Outcomes
ClinicalTrials.gov study NCT04203238. IPD Sharing: NO. Countries: 1. Publications: 1.
Cardiometabolic Benefits of Potatoes Mediated Along the Gut-Vessel Axis in Adults With Metabolic Syndrome
ClinicalTrials.gov study NCT03624569. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Data from: Targeted genotyping-by-sequencing of potato and data analysis with R/polyBreedR
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Annotation and evolutionary analysis of chemosensory gene sequence data in the Colorado potato beetle, Leptinotarsa decemlineata
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The role of structural variants in pest adaptation and genome evolution of the Colorado potato beetle, Leptinotarsa decemlineata (Say)
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Potato super pangenome v1.0
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Population genetics of the Four Corners potato (Solanum jamesii)
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Heatwave ontogenetic timing impacts on potato crop-pest dynamics
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Effect of water availability on volatile-mediated communication between potato plants in response to insect herbivory
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Dataset: T-DNA characterization of genetically modified 3-R-gene late blight resistant potato events with a novel procedure utilizing the Samplix Xdrop® Enrichment Technology
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Data from: Cropland connectivity affects genetic divergence of Colorado potato beetle along an invasion front
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Data from: Effects of a heat wave event on the chemical ecology of species interactions in the potato agroecosystem
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Data from: The structure and allelic diversity of the self-incompatibility locus (S-locus) in diploid potatoes inferred from genome sequences and transcriptome data from styles and pollen
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Data from: High-throughput classification and quantification of skinning phenotype in sweet potatoes
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Subgenome annotations for allotetraploid potato wild relative Solanum acaule, clone AA9
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Ancient use of the four corners potato
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