Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
99
datasets available to search
ShareScore release 0.9.0
Dataset results
99 results for “processing code”
Transcriptome and Functional Analyses Reveal Roles For Regulators of Epigenetic States, Micro RNA Processing, And Long Non-Coding RNA In Myocyte Dedifferentiation: Insights Into Reprogramming A “Post-
GEO Series GSE92489. Danio rerio. 14 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Non-coding RNA, RNY1 is essential for reprogramming process
GEO Series GSE118887. Homo sapiens. 6 samples. Type: Expression profiling by array.
Next-generation sequencing reveals HIV-1-mediated suppression of T cell activation and RNA processing and the regulation of non-coding RNA expression in a CD4+ T cell line
GEO Series GSE38006. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Integrator complex regulates NELF-mediated RNA Polymerase II pause/release and processivity at coding genes [ChIP-seq]
GEO Series GSE60584. Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Increased processing of SINE B2 non coding RNAs unveils a novel type of transcriptome de-regulation underlying amyloid beta neuro-pathology
GEO Series GSE149243. Mus musculus. 62 samples. Type: Expression profiling by high throughput sequencing; Other.
NSun2-mediated cytosine-5 methylation in Vault non-coding RNA determines its processing into small RNAs [iCLIP]
GEO Series GSE44385. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
NSun2-mediated cytosine-5 methylation in Vault non-coding RNA determines its processing into small RNAs [RNA-seq]
GEO Series GSE44384. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Gene structure, differential exon usage, and expression of the testis long intergenic non-protein coding RNA 1016 in humans reveals isoform-specific roles in controlling biological processes
GEO Series GSE171047. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Mucin Acts as a Nutrient Source and a Signal for the Differential Expression of Genes Coding for Cellular Processes and Virulence Factors in Acinetobacter baumannii
GEO Series GSE100582. Acinetobacter baumannii. 6 samples. Type: Expression profiling by high throughput sequencing.
Data and code for: Conserved subcortical processing in visuo-vestibular gaze control (Nat. Comm).
<p>Source data, code used for analysis and presentation of visuo-vestibular stimulation, and additional datasets of the manuscript published in Nature Communications entitled: Conserved subcortical processing in visuo-vestibular gaze control.</p>
Example for USA metrological years 2020 and 2022 results data sets and post processing python code
<p>The files contain LCF model output data for 2020 and 2022 metrological years in the US as well as a python post-processing code to aggregate the reults of these files.</p>
scRNA-seq processed data and code for Losa, Barozzi et al.
<p>scRNA-seq processed data and code for Losa, Barozzi et al. Data from limbs of mouse embryos (E11.5).</p>
The Potential Association of Long Non-coding RNA (NEAT1 and MALAT1) in the Process of Epithelial-mesenchymal Transition in Periodontitis
ClinicalTrials.gov study NCT05995067. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Imaging processing code for phase-sensitive analysis
Open the record for dataset details and reuse information.
Integrator complex regulates NELF-mediated RNA Polymerase II pause/release and processivity at coding genes [RNA-seq]
GEO Series GSE60585. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Integrator complex regulates NELF-mediated RNA Polymerase II pause/release and processivity at coding genes.
GEO Series GSE60586. Homo sapiens. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
ARC Code TI: Block-GP: Scalable Gaussian Process Regression
Block GP is a Gaussian Process regression framework for multimodal data, that can be an order of magnitude more scalable than existing state-of-the-art nonlinear regression algorithms. The framework builds local Gaussian Processes on semantically meaningful partitions of the data and provides higher prediction accuracy than a single global model with very high confidence.
Data and code used in the article "Integrating multiphysics processes with deep learning for the Prediction of coupled water-vapor-heat water fluxes in unsaturated zone"
<p>《Integrating multiphysics processes with deep learning for the Prediction of coupled water-vapor-heat water fluxes in unsaturated zone》 (the paper has been submitted to <em>Water Resources Research</em>). The data and code used in the paper, specifically, the water content data and temperature data from in-situ observations from July 1, 2020 to August 29, 2020 (with a frequency of observations of 5 min), and the sample code for implementing cpinn using python (mainly the tensorflow library). These data can help readers better understand and replicate our study. All data and code have been uploaded.</p> <p>The paper has been submitted to <em>Water Resources Research</em>, if the paper is accepted for publication, all data will be made freely available.</p> <p>.</p> <p> </p>
Dataset and Code for the Research Paper: "A Smile is All You Need: Predicting Limiting Activity Coefficients from SMILES with Natural Language Processing."
<p><strong>Dataset and Code for the Research Paper: "A Smile is All You Need: Predicting Limiting Activity Coefficients from SMILES with Natural Language Processing."</strong></p> <p>For detailed instructions on how to utilize the resources, please refer to the <code>README.md</code> and see the original publication: https://doi.org/10.1039/D2DD00058J</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.