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123 results for “reference material”
Lab_32_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_32_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Supplementary material 9 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Table S3. Intraspecific and interspecific divergence of Hemerobiidae based on COI barcode sequences (%) : Explanation note: Tthe range of interspecific distance = mean interspecific distance ± standard error. N/A indicates intraspecific distance not available because only one specimen was sequenced.
Supplementary material 8 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Table S2. Intraspecific and interspecific divergence of Chrysopidae based on COI barcode sequences (%) : Explanation note: The range of interspecific distance = mean interspecific distance ± standard error. N/A indicates intraspecific distance not available because only one specimen was sequenced.
Supplementary material 4 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure S4. Neighbor-joining tree based on the COI sequence dataset of Chrysopidae : Explanation note: Neighbor-joining tree based on the COI sequence dataset of Chrysopidae. Only bootstrap supports (1,000 replicates) > 0.95 are labelled.
Supplementary material 7 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Table S1. Intraspecific and interspecific divergence of Coniopterygidae based on COI barcode sequences (%) : Explanation note: The range of interspecific distance = means interspecific distance ± standard error. N/A indicates intraspecific distance not available because only one specimen was sequenced.
Supplementary material 3 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure S3. Photographs of male genitalia of species of Hemerobiidae newly recorded from Beijing : Explanation note: A. Drepanepteryxalgida (Erichson, 1851); B. Hemerobiusbispinus Banks, 1940; C. Hemerobiusexoterus Navás, 1936; D. Hemerobiushumulinus Linnaeus, 1758; E. Hemerobiusjaponicus Nakahara, 1915; F. Hemerobiusmarginatus (Stephens, 1836); G. Hemerobiussubtriangulus Yang, 1987; H. Sympherobiusmanchuricus Nakahara, 1960. Scale bar: 0.5 mm.
Supplementary material 10 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Table S4. Intraspecific and interspecific divergence of Myrmeleontidae and Ascalaphidae based on COI barcode sequences (%) : Explanation note: The range of interspecific distance = mean interspecific distance ± standard error. N/A indicates intraspecific distance not available because only one specimen was sequenced.
Supplementary material 1 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure S1. Photographs of male genitalia of species of Coniopterygidae newly recorded from Beijing : Explanation note: A. Conwentziasinica Yang, 1974; B. Semidalisbicornis Liu & Yang, 1993. Scale bar 0.5 mm.
Supplementary material 2 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure S2. Photographs of male genitalia of species of Chrysopidae newly recorded from Beijing : Explanation note: A. Nothochrysasinica Yang, 1986; B. Chrysopaintima McLachlan, 1893; C. Chrysoperlafurcifera (Okamoto, 1914); D. Chrysopidiaciliata (Wesmael, 1841); E. Pseudomalladacognatellus (Okamoto, 1914); F. Pseudomalladaqinlingensis (Yang & Yang, 1989); G. Ninetagrandis Navás, 1915. Scale bar: 0.5 mm.
Electromagnetic Spectrum Short References and Supplement Materials
<p>References and Supplement Materials for the Electromagnetic Spectrum Short</p>
WES proficiency test using Quartet reference materials
Open the record for dataset details and reuse information.
Supplementary material 6 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
File S2. Checklist of the species of Neuroptera from Beijing :
Supplementary material 5 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
File S1. List of all specimens used in this study, including GenBank accession numbers :
Supplementary material 2 from: Ahmed M, Back MA, Prior T, Karssen G, Lawson R, Adams I, Sapp M (2019) Metabarcoding of soil nematodes: the importance of taxonomic coverage and availability of reference sequences in choosing suitable marker(s). Metabarcoding and Metagenomics 3: e36408. https://doi.org/10.3897/mbmg.3.36408
: Data type: source code
Supplementary material 1 from: Ahmed M, Back MA, Prior T, Karssen G, Lawson R, Adams I, Sapp M (2019) Metabarcoding of soil nematodes: the importance of taxonomic coverage and availability of reference sequences in choosing suitable marker(s). Metabarcoding and Metagenomics 3: e36408. https://doi.org/10.3897/mbmg.3.36408
: Data type: species data
Supplementary material 3 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S3
Supplementary material 9 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S9
Supplementary material 1 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S1
Supplementary material 7 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
File S7
Supplementary material 21 from: Rajter Ľ, Dunthorn M (2021) Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data. Metabarcoding and Metagenomics 5: e69602. https://doi.org/10.3897/mbmg.5.69602
Table S2
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.