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141 results for “research database”
Figure 5 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 5 - Example of an image in WoRCS, showing the habitus and some aspects of the biology of a cave species.
Figure 4 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 4 - The WoRCS taxon details page includes taxonomic information, references, vernacular names and distribution data, along with a series of attributes gathering information about morphology, biology, reproduction and ecology of each cave species.
Figure 9 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 9 - Top: to retrieve a scanned BHL book document from BHL click on the "Download Contents" icon on the top-right and select to browse the corresponding web page on the Internet Archive ("View at Internet Archive"). Bottom: The link to the jpeg2000 (JP2) image is found on the bottom right. Sources: top: http://biodiversitylibrary.org/page/9663476; bottom: https://archive.org/details/mittheilungenaus17staz.
Figure 3 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 3 - Examples of stylistic and typographic elements in legacy publications that delay the structured extraction of data: a) ranges or more than one value in one field; b) non-metric units which have to be converted to the SI system; c and d) unclear meaning of symbols; e) font type may cause problems in reading and/or optical character recognition (e.g. misinterpreting an "e" as "c" or "o"; "ll" as "11" or "U", "C" as "C" or "O") (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).
Figure 10 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 10 - Open Data: an emerging landscape of data and other academic publications (based on a slide by Dmitry Schigel).
Figure 8 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 8 - Plazi workflow: from the publication through different levels of data processing to final availability of structured data.
Figure 5 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 5 - Biodiversity related articles and instructions to the authors available on the Biodiversity Literature Repository home page.
Figure 2 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 2 - Stations without coordinates (red box) are commonly listed, as well as non-SI units, here: depth as fathoms (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).
Figure 4 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 4 - Complex natural language features that can lead to incorrect species-occurrence extraction (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).
Figure 6 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 6 - Calman (1906) is available in BLR as https://zenodo.org/record/14941. The taxonomic treatment of Leucon longirostris G.O. Sars (shown above) extracted from this expedition document is also avaible in BLR: https://zenodo.org/record/14942. Both links have unique DOIs assigned to them and thus are also retrievable as https://doi.org/10.5281/zenodo.14941, and https://doi.org/10.5281/zenodo.14942, accordingly.
Figure 1 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 1 - Workflow depicting the process of manually extracting data from legacy literature workflow, as currently performed in in EMODnet WP4. Abbreviations: OCR = Optical Character Recognition; OBIS = Ocean Biogeographic Information System; DwC = Darwin Core; IPT = Integrated Publishing Toolkit; medOBIS = Mediterranean Ocean Biogeographic Information System, GBIF = Global Biodiversity Information Facility
Figure 2 from: Báthori F, Pfliegler WP, Zimmerman C-U, Tartally A (2017) Online image databases as multi-purpose resources: discovery of a new host ant of Rickia wasmannii Cavara (Ascomycota, Laboulbeniales) by screening AntWeb.org. Journal of Hymenoptera Research 61: 85-94. https://doi.org/10.3897/jhr.61.20255
Figure 2 Photograph of a slide-mounted Rickia wasmannii thallus (deposition number: G00562301) from Myrmica hellenica host, recorded on the AntWeb (specimen: CASENT0907653).
Figure 3 from: Báthori F, Pfliegler WP, Zimmerman C-U, Tartally A (2017) Online image databases as multi-purpose resources: discovery of a new host ant of Rickia wasmannii Cavara (Ascomycota, Laboulbeniales) by screening AntWeb.org. Journal of Hymenoptera Research 61: 85-94. https://doi.org/10.3897/jhr.61.20255
Figure 3 Dorsal (A), head (B) and profile (C) view of the Rickia wasmannii infected Myrmica hellenica worker, recorded on AntWeb (specimen: CASENT0907653), arrows indicate some clearly identifiable R. wasmannii thalli.
Figure 1 from: Báthori F, Pfliegler WP, Zimmerman C-U, Tartally A (2017) Online image databases as multi-purpose resources: discovery of a new host ant of Rickia wasmannii Cavara (Ascomycota, Laboulbeniales) by screening AntWeb.org. Journal of Hymenoptera Research 61: 85-94. https://doi.org/10.3897/jhr.61.20255
Figure 1 Appearance of the fungal infection on mounted specimens: Rickia-infected Myrmica scabrinodis hosts killed by freezing (A) or with ethanol (B) or chloroform (C), photographed one month after mounting and dry storage.
Database for hydrology research between 1980 and 2023
<p><span>This database was developed in a study titled “Hydrological research evolution: A large language model–based analysis of 310,000 studies published globally between 1980 and 2023” (Miao et al., 2024). It includes data from a quantitative literature review, based on searches performed with the Web of Science (WoS) search engine across all available databases. The search was performed in October 2023, encompassing the fields of title, abstract, journal name, authors’ names, authors’ affiliations, authors’ keywords and WoS generated keywords, and other information provided by WoS. See Miao et al. (2024) for further search method and other study descriptions.</span></p> <p><span> </span></p> <p><span>The WoS source data is provided in Text files (*.txt), </span><span>comprising and organized in four folders which represent search results for different keywords and publication dates. The preprocessed data is provided in a Comma-Separated Values (CSV) file (record_txt_unique.csv), which is the product of merging, deduplicating, and filtering the results of the WoS </span><span>source data</span><span>.</span></p>
Scientometric Assessment of Digital Library Research Publications during 2008-2017 using SCOPUS Database
Open the record for dataset details and reuse information.
Figure 6 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Capatano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e9774. https://doi.org/10.3897/rio.2.e9774
Figure 6 - Calman 1906 is available in BLR as https://zenodo.org/record/14941. The taxonomic treatment of Leucon longirostris G.O. Sars (shown above) extracted from this expedition document is also avaible in BLR: https://zenodo.org/record/14942. Both links have unique DOIs assigned to them and thus are also retrievable as https://doi.org/10.5281/zenodo.14941, and https://doi.org/10.5281/zenodo.14942, accordingly.
Figure 2 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Capatano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e9774. https://doi.org/10.3897/rio.2.e9774
Figure 2 - Stations without coordinates (red box) are commonly listed, as well as non-SI units, here: depth as fathoms (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).
Figure 9 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Capatano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e9774. https://doi.org/10.3897/rio.2.e9774
Figure 9 - Top: to retrieve a scanned BHL book document from BHL click on the "Download Contents" icon on the top-right and select to browse the corresponding web page on the Internet Archive ("View at Internet Archive"). Bottom: The link to the jpeg2000 (JP2) image is found on the bottom right. Sources: top: http://biodiversitylibrary.org/page/9663476; bottom: https://archive.org/details/mittheilungenaus17staz.
Figure 8 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Capatano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e9774. https://doi.org/10.3897/rio.2.e9774
Figure 8 - Plazi workflow: from the publication through different levels of data processing to final availability of structured data.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.