Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
371
datasets available to search
ShareScore release 0.9.0
Dataset results
371 results for “single cell genomics”
Single-cell genome-wide analysis of macula densa cell gene expression in control and physiological stimulatory conditions
GEO Series GSE189954. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Comprehensive single cell transcriptomics analysis of murine osteosarcoma uncovers Skp2 function in metastasis, genomic instability and immune activation and reveals additional target pathways
GEO Series GSE262743. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications [slideseq]
GEO Series GSE216055. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
DNA methylation maintains integrity of higher order genome architecture (single cell Repli-Seq)
GEO Series GSE158009. Homo sapiens. 4 samples. Type: Other.
Single-cell genomics of the mouse olfactory cortex reveals contrasts with neocortex and ancestral signatures of cell type evolution
GEO Series GSE239477. Mus musculus. 72 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Droplet-based high-throughput 3D genome structure mapping of single cells with simultaneous transcriptomics (dscHi-C multiome)
GEO Series GSE285233. Mus musculus. 6 samples. Type: Other.
Multiplex generation and single cell analysis of structural variants in mammalian genomes [Amplicon-seq]
GEO Series GSE282632. Mus musculus; Homo sapiens. 169 samples. Type: Other.
Genome-wide DNA replication profiling and full-length total RNA sequencing from the same single cell [03_CBMS1_mESC]
GEO Series GSE278949. Mus musculus. 168 samples. Type: Expression profiling by high throughput sequencing; Other.
10X Genomics single-cell RNAseq combined with CRISPR tiling of Dot1l in mouse MLL-AF9 leukemia
GEO Series GSE174307. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of the zygotic genome activation progrmme (bulk RNA-seq of arrayed CRISPRa validations and bulk RNA-seq of P
GEO Series GSE135512. Mus musculus. 57 samples. Type: Expression profiling by high throughput sequencing.
Genomic characterization of murine monocytes reveals C/EBPb dependence of Ly6C-cells [Single Cell RNA sequence]
GEO Series GSE95701. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state
GEO Series GSE214264. Mus musculus. 101 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Single cell 10X Genomics Multiome Analysis of H3.3K4M Mutant Brain Samples
GEO Series GSE293881. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single cell functional genomics reveals the importance of mitochondria in cell-to-cell phenotypic variation
GEO Series GSE104343. Saccharomyces cerevisiae. 4 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide DNA replication profiling and full-length total RNA sequencing from the same single cell [hTERT-RPE1 Whole-S]
GEO Series GSE278951. Homo sapiens. 98 samples. Type: Expression profiling by high throughput sequencing; Other.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [scMicro-C, GM12878]
GEO Series GSE192759. Homo sapiens. 355 samples. Type: Other.
Cell composition analysis of bulk genomics using single cell data
GEO Series GSE113530. Mus musculus. 74 samples. Type: Expression profiling by high throughput sequencing.
10X genomics single cell sequencing of sheep testis
GEO Series GSE184343. Ovis aries. 1 samples. Type: Expression profiling by high throughput sequencing.
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [10X_scATACseq]
GEO Series GSE141586. Drosophila melanogaster. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell sequencing reveals the heterogeneity of pancreatic neuroendocrine tumors under the pattern of genomic instability and histological grading
GEO Series GSE256136. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.