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122 results for “structural stability”
Stability in subtropical forests: the role of tree-species diversity, stand structure, environmental and socio-economic conditions
<p><strong>Aim: </strong>Tree species diversity can increase the stability of ecosystem productivity by increasing mean productivity and/or reducing the standard deviation in productivity. However, stand structure, environmental and socio-economic conditions influence plant diversity and may strongly influence the relationships between diversity and stability in natural forest communities. The relative importance of these factors on community stability remains poorly understood in complex (species-rich) subtropical forests.</p> <p><strong>Location: </strong>Subtropical area of southern China.</p> <p><strong>Time period: </strong>1999-2014.</p> <p><strong>Major taxa studied:</strong> Forest trees.</p> <p><strong>Methods: </strong>We conducted bivariate analyses to examine the mechanisms (overyielding and species asynchrony) underlying the effects of diversity on stability. Multiple regression models were then used to determine the relative importance of tree species diversity, stand structure, socio-economic factors and environmental conditions on stability. Structural equation modeling was used to disentangle how these variables directly and/or indirectly affect forest stability.</p> <p><strong>Results: </strong>Tree species richness exerted a positive effect on stability through overyielding and species asynchrony and this effect was stronger in mountainous forests than that in hilly forests. Species richness positively affected the mean productivity whereas species asynchrony negatively affected the variability in productivity, and hence increased forest stability. Structural diversity also had a positive effect while population density had a negative effect on stability. Precipitation variability and slope mainly indirectly influenced stability through their effects on tree species richness.</p> <p><strong>Main conclusions: </strong>Overall, tree species diversity governed stability; however stand structure, socio-economic and environmental conditions also played an important role in shaping stability in these forests. Our work highlights the importance of regulating stand structure and socio-economic factors in forest management and biodiversity conservation, to maintain and enhance their stability of providing the ecosystem services in the face of unprecedented anthropogenic activities and global climate change.</p>
Thermodynamic analysis of amyloid fibril structures reveals a common framework for stability in amyloid polymorphs
<p>Supplementary data, input files and R scripts, to reproduce figures in publication.</p>
Double mutant stability data and single mutant structures for ThermoMPNN-D paper
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Fig. 5 in Stability and spatio-temporal structure in fish assemblages of two floodplain lagoons of the lower Orinoco River
Fig. 5. Variability by hydrological phases and habitats of the diversity and equitability (Shanon) and richness. a and b = the Arhuacas; c and d = the Cardonales. The abbreviations of the hydrological phases and habitats are explained in the Fig. 2.
Nano-structured Hydrotrope-Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insight
<p>The input and main output files used for the paper <em><strong>"Nanostructured Hydrotropes Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insights"</strong></em> are separated in the different tar files.</p> <p><strong>Contents:</strong></p> <p>00_packmol : box built using PACKMOL package for ATP, IL and ATP_IL systems</p> <p>01_Build_systems : parameters and input files for WAT, ATP, IL and ATP_IL systems</p> <p>02_Minimization_Equilibration_RT : minimization and equilibration inputs, restarts and output files for WAT, ATP, IL and ATP_IL systems at 300K</p> <p>03_Minimization_Equilibration_HT : minimization and equilibration inputs, restarts and output files for WAT, ATP, IL and ATP_IL systems at 363.15K</p> <p>04_HTMD_Cytc_WAT_RT : HTMD input, restarts and output files for Cyt c + WAT system at 300K</p> <p>05_HTMD_Cytc_ATP_RT : HTMD input, restarts and output files for Cyt c + ATP system at 300K</p> <p>06_HTMD_Cytc_IL_RT : HTMD input, restarts and output files for Cyt c + IL system at 300K</p> <p>07_HTMD_Cytc_ATP_IL_RT : HTMD input, restarts and output files for Cyt c + ATP_IL system at 300K</p> <p>08_HTMD_Cytc_WAT_HT : HTMD input, restarts and output files for Cyt c + WAT system at 363.15K</p> <p>09_HTMD_Cytc_ATP_HT : HTMD input, restarts and output files for Cyt c + ATP system at 363.15K</p> <p>10_HTMD_Cytc_IL_HT : HTMD input, restarts and output files for Cyt c + IL system at 363.15K</p> <p>11_HTMD_Cytc_ATP_IL_HT : HTMD input, restarts and output files for Cyt c + ATP_IL system at 363.15K</p> <p>12_HTMD_MD_analysis_RT : Analysis raw data for Bayesian MSM, RDF, RMSD, RMSF, H-bonds and Secondary structure changes at 300K </p> <p>13_HTMD_MD_analysis_HT : Analysis raw data for Bayesian MSM, RDF, RMSD, RMSF, H-bonds and Secondary structure changes at 363.15K </p> <p>14_H2O_RT : Radial Distribution Function (RDF) data for simulations in explicit water and in absence of the protein Cyt c</p> <p><strong>Notes:</strong> Each folder contains INFO.md with further detailed information on respective types of data.</p> <p> </p>
Data from: miR-122, small RNA annealing and sequence mutations alter the predicted structure of the Hepatitis C virus 5′ UTR RNA to stabilize and promote viral RNA accumulation
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Changes in stream food web structure across a gradient of acid mine drainage increases local community stability
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Data from: Structural modification of isomorphous SO42−-doped K2FeO4 for remediating the stability and enhancing the discharge of super-iron battery
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Data from: Clonal structure through space and time: high stability in the holothurian Stichopus chloronotus (Echinodermata)
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Data from: Structure-based network analysis of activation mechanisms in the ErbB family of receptor tyrosine kinases: the regulatory spine residues are global mediators of structural stability and allosteric interactions
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Data from: The Chlamydiales pangenome revisited: structural stability and functional coherence
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Stability in subtropical forests: the role of tree-species diversity, stand structure, environmental and socio-economic conditions
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Extensive structural differences of closely related 3’ mRNA isoforms: links to Pab1 binding and mRNA stability
GEO Series GSE95788. Saccharomyces cerevisiae; Kluyveromyces lactis; Debaryomyces hansenii. 42 samples. Type: Expression profiling by high throughput sequencing.
N6-methyladenosine-mediated structural changes are associated with transcript cleavage and stability in Arabidopsis
GEO Series GSE108852. Arabidopsis thaliana. 50 samples. Type: Expression profiling by high throughput sequencing; Other.
Systematic Discovery of Structural Elements Governing Mammalian mRNA Stability
GEO Series GSE35800. Homo sapiens. 43 samples. Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Widespread Influence of 3′-end Structures on Mammalian mRNA Processing and Stability [CENPB-3'-end-KO]
GEO Series GSE95466. Homo sapiens. 2 samples. Type: Other; Expression profiling by high throughput sequencing.
Widespread Influence of 3′-end Structures on Mammalian mRNA Processing and Stability [CENPB-3'-end-library]
GEO Series GSE93424. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
TDP-43 binds to RNA G-quadruplex structure and regulates mRNA stability and translation
GEO Series GSE272797. Homo sapiens. 8 samples. Type: Other.
Widespread Influence of 3′-end Structures on Mammalian mRNA Processing and Stability [Artificial-3'-end]
GEO Series GSE95467. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
N6-methyladenosine and RNA secondary structure affect transcript stability and translation during systemic salt stress in Arabidopsis
GEO Series GSE147812. Arabidopsis thaliana. 16 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.