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Figs. 1–5. 1. Ampullaria angulata Jay, 1836 in Catalog Of Recent Type Specimens In The Division Of Invertebrate Zoology, American Museum Of Natural History. V. Mollusca, Part 2 (Class Gastropoda [Exclusive Opisthobranchia And Pulmonata With Supplements To Gastropoda [Opisthobranchia], And Bivalvia
Figs. 1–5. 1. Ampullaria angulata Jay, 1836 (syntype—AMNH 56108), X 1.5. 2. brownii Jay, 1839 (syntype—AMNH 56107), X 1.25. 3. Ampullaria ochracea Jay, 1836 (
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Dataset and source code for manuscript "Chromosomal gene order defines several structural classes of Staphylococcus epidermidis genomes"
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Fig. 4 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the orders Aeromonadales, Alteromonadales, Cellvibrionales and Enterobacterales in the class Gammaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 70% are shown. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 6 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 6. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the orders Pseudomonadales and Vibrionales in the class Gammaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 70% are shown. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in A report on 38 unrecorded bacterial species in Korea in the class Gammaproteobacteria
Fig. 2. Transmission electron micrographs of cells of the species in the orders Oceanospirillales, Pseudomonadales, and Vibrionales belonging to the class Gammaproteobacteria in this study. Strain: 1, KYW1820; 2, KYW1809; 3, KYW1985; 4, LPB0278; 5, LPB0279; 6, SCBP1; 7, KYW1748; 8, CAU 1519; 9, CAU 1560; 10, BT58; 11, BT76; 12, BT345; 13, LPB0305; 14, MMS19-T15; 15, F-130; 16, BG108; 17, BG24; 18, BT59; 19, LPB0317; 20, LPB0315; 21, LPB0326.
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Fig. 5 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strain LPB0172 isolated in this study and its relatives in the order Desulfovibrionales in the class Deltaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.05 changes per nucleotide.
Fig. 6 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 6. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strain LPB0305 isolated in this study and its relatives in the order Campylobacterales in the class Epsilonproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, HMF3828; 2, CL5; 3, V7; 4, IMCC25608; 5, NU4; 6, SIL02; 7, RDH1; 8, IMCC25609; 9, LPB0094; 10, IMCC25610; 11, JAF4; 12, HMF2668; 13, HMF3938; 14, KYW1034; 15, LPB0098; 16, C10-12; 17, C3-48; 18, E15; 19, TW2K3; 20, G11; 21, MW26; 22, IMCC25619; 23, IMCC25606; 24, LPB0124; 25, NR 4-05; 26, HMF4018; 27, JJ13; 28, IMCC25620; 29, BR5-29-1; 30, S6-5; 31, LPB0117.
Fig. 3 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhodobacterales and Sphingomonadales in the class Alphaproteobacteria. Bootstrap values are greater than 70% are shown the neighbor-joining tree method. Bar, 0.02 substitutions per nucleotide position. The strain Escherichia coli ATCC 11775T is used as an outgroup.
Fig. 1 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, CrO8; 2, KYW1510; 3, BT41; 4, BO184; 5, Wi-122; 6, Wi-69; 7, CAU 1493; 8, Hyper-3; 9, BT148; 10, HMF7144; 11, MMS18-CY061; 12, GA017; 13, Wi-125; 14, 18JY13-8; 15, Gri211; 16, CAU 1498; 17, KYW1484; 18, Wi-144; 19, dNF-2; 20, Ast32; 21, JBTF-M28; 22, CAU 1505; 23, BO-81; 24, CHM 34; 25, SGG 2; 26, SG3.K22; 27, YA.S; 28, KO.BC1; 29, CLH 2; 30, SG2.K2; 31, DW.G5; 32, CDK1.9; 33, YA.W2; 34, SG3.K31; 35, MGO 2; 36, SG.K 4; 37, HMF9221; 38, H-1; 39, HMF9223; 40, MMS18-GA122; 41, HMF9218; 42, LA-50.
Fig. 4 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 4. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhodobacterales, Caulobacterales and Rhodospirillales in the class Alphaproteobacteria. Bootstrap values>70% are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a in Report of two unrecorded yeast species in the class Tremellomycetes
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain DJ2-14-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position (Trees, 1987).
Fig. 2 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria
Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the species in the order Alteromonadales, Enterobacteriales and Oceanospirillales belonging to the Gammaproteobacteria isolated in this study. Strains: 1, TJB7; 2, JF6; 3, KYW1005; 4, HMF3946; 5, LPB0073; 6, KHL6; 7, KHN5; 8, KHM5; 9, KHN16; 10, KHL16; 11, IMCC25602; 12, KM3; 13, DF-5; 14, TW2C3; 15, TW2I3; 16, GT 8-07; 17, HMF3896; 18, KM2; 19, HMF4436; 20, LPB0099; 21, LPB0063.
Fig. 5 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria
Fig. 5. Neighbour-joining (NJ) tree based on the 16S rRNA gene sequence comparisons, showing the taxonomic position between the 21 strains isolated in this study and the notable type species from the orders Alteromonadales, Enterobacteriales and Oceanospirillales in the class Gammaproteobacteria. The tree was primarily reconstructed using a neighbor-joining algorithm (NJ). Maximum parsimony (MP) and maximum likelihood (ML) algorithms were applied for additional comparisons. Corresponding branches are presented as filled diamonds; at the nodes, only bootstrap values of more than 70% are shown, which are expressed as a percentage of 1000 replicates (NJ/MP/ML). Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was established as an out-group. The bar indicates 0.02 substitutions per nucleotide.
Fig. 1 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the species belonging to the Betaproteobacteria isolated in this study. Strains: 1, HMF3907; 2, JD2; 3, JD5; 4, JD24; 5, JD50; 6, IMCC25601; 7, IMCC25614; 8, C1-1; 9, C1-11; 10, NJ-1-5; 11, GF5; 12, JF-5; 13, 2015-3; 14, IMCC25617; 15, NDH-10; 16, RDH4; 17, HMF4008; 18, HMF4075.
Fig. 1 in A report on 53 unrecorded bacteria species in Korea in the class Gammaproteobacteria
Fig. 1. Transmission electron micrographs of cells of the species in the order Alteromonadales, Chromatiales and Enterobacterales belonging to the class Gammaproteobacteria in this study. Strain: 1, IMCC34138; 2, KYW1359; 3, HMF8561; 4, LPB0188; 5, LPB0300; 6, LPB0182; 7, IMCC34178; 8, KYW1326; 9, IMCC34174; 10, LPB0308; 11, LPB0180; 12, LPB0184; 13, LPB0186; 14, HMF8517; 15, BT3507; 16, BT3301; 17, BR3501; 18, BC3307; 19, LPB0191; 20, BC3202; 21, BT2501; 22, BT3409; 23, KYW1346; 24, MMS17-GJ020; 25, CAU 1471.
Fig. 3. A in A report on 15 unrecorded bacterial species of Korea isolated in 2016, belonging to the class Betaproteobacteria
Fig. 3. A neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Comamonadaceae. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.005 substitutions per nucleotide position.
Fig. 4 in A report on 53 unrecorded bacteria species in Korea in the class Gammaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree (NJ) based on nearly complete 16S rRNA gene sequences showing the relationships between 28 isolated strains and their most closely related from the order Oceanospirillales, Pseudomonadales, Vibrionales and Xanthomonadales of the class Gammaproteobacteria. Dots indicate that the corresponding nodes that were also recovered in the trees created with the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values are indicated as percentages of 1000 resampled datasets, when greater than 70% (NJ/ML/MP). Bar, 0.01 substitutions per nucleotide position. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as the outgroup.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.