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1,003
datasets available to search
ShareScore release 0.9.0
Dataset results
1,003 results for “darkness”
Expression data from 7-day-old dark-grown wild-type and dez mutant seedlings from control (1 µM) and high-Zn (100 µM) media
GEO Series GSE96589. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
RNA-seq experiment of wild-type (WT) and pif4 mutant seedlings grown for 3 days in darkness and exposed or not to heat stress for 3 hours.
GEO Series GSE200247. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
Expression data from Arabidopsis seedlings heat-stressed in light and dark environment
GEO Series GSE58621. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
comparison_cul4_as_dark_light-Functional analysis of the SKP2 and CUL4 proteins
GEO Series GSE36652. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
Jasmonic acid and dark induced leaf senescence in tomato was alleviated by knock-out of SlWRKY37
GEO Series GSE186072. Solanum lycopersicum. 9 samples. Type: Expression profiling by high throughput sequencing.
Dark-induced gene expression in sfr6
GEO Series GSE5710. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
dark hypocotyls tor rnai-Dark hypocotyls TOR RNAi
GEO Series GSE41404. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
Microarray studies of darkness stress and bleaching in the Caribbean coral Acropora palmata
GEO Series GSE27022. Acropora palmata. 16 samples. Type: Expression profiling by array.
A degradome sequencing of rice mesocotyl from darkness to light exposure
GEO Series GSE136140. Oryza sativa. 2 samples. Type: Other.
Comparative transcriptome data of multi tissues in response to different environmental light-dark cycles
GEO Series GSE226855. Mus musculus. 228 samples. Type: Expression profiling by high throughput sequencing.
Light versus Dark gene expression in SAR11
GEO Series GSE24134. Candidatus Pelagibacter sp. HTCC7211; Candidatus Pelagibacter ubique HTCC1002; Candidatus Pelagibacter ubique HTCC1062. 15 samples. Type: Expression profiling by array.
Expression data from 10-days old dark grown Arabidopsis seedlings of wild type (Col-0), sps1 line and L17 line.
GEO Series GSE36581. Arabidopsis thaliana. 9 samples. Type: Expression profiling by array.
133_dark_kinase_proximity_data
Open the record for dataset details and reuse information.
Polarisation vision in the dark: green-sensitive photoreceptors in the nocturnal ball-rolling dung beetle Escarabaeus satyrus
Open the record for dataset details and reuse information.
Alignments for ITS and FRO regions - Single cell sequencing dark fungi
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On the thermodynamics of dark energy and expanding spacetime
<p>The article presents the results of the author's thermodynamic study on dark energy and expanding universe. </p>
Dataset to "Fluorescence Bar-coding and Flowmetry based on Dark State Transitions in Fluorescence Emitters"
<p><strong>This folder contains all raw data underlying the results presented in a manuscript, submitted for publication to <em>Journal of Physical Chemistry B</em>, and entitled:</strong></p> <p><strong>Fluorescence Bar-coding and Flowmetry based on Dark State Transitions in Fluorescence Emitters</strong></p> <p> </p> <p><strong>Authored by:</strong></p> <p>B. Demirbay‡, E. Sandberg‡, J. Piguet, J. Widengren*</p> <p>Royal Institute of Technology (KTH), Experimental Biomolecular Physics, Dept. Applied Physics, Albanova University Center 106 91 Stockholm, Sweden</p> <p>‡Contributed equally.</p> <p>*Corresponding Author:</p> <p> Email: <a href="mailto:jwideng@kth.se">jwideng@kth.se</a>, Phone: +46-8-7907813</p> <p> </p> <p><strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented.</strong></p> <p> </p> <p><strong>ABSTRACT</strong></p> <p>Reversible dark state transitions in fluorophores represent a limiting factor in fluorescence-based ultrasensitive spectroscopy, is a necessary basis for fluorescence-based super-resolution imaging, but may also offer additional, largely orthogonal fluorescence-based readout parameters. In this work, we analyzed the blinking kinetics of Cyanine5 (Cy5) as a bar-coding feature distinguishing Cy5 from rhodamine fluorophores having largely overlapping emission spectra. First, fluorescence correlation spectroscopy (FCS) solution measurements on mixtures of free fluorophores and fluorophore-labeled small unilamellar vesicles (SUVs) showed that Cy5 could be readily distinguished from the rhodamines by its reversible, largely excitation-driven <em>trans-cis</em> isomerization. This was next confirmed by transient state (TRAST) spectroscopy measurements, determining the fluorophore dark state kinetics in a more robust manner, from how the time-averaged fluorescence intensity varies upon modulation of the applied excitation light. TRAST was then combined with wide-field imaging of live cells, whereby Cy5 and rhodamine fluorophores could be distinguished on a whole cell level, as well as in spatially resolved, multiplexed images of the cells. Finally, we established a microfluidic TRAST concept, and showed how different mixtures of free Cy5 and rhodamine fluorophores and corresponding fluorophore-labeled SUVs could be distinguished on-the-fly when passing through a microfluidic channel. In contrast to FCS, TRAST does not rely on single-molecule detection conditions or a high time-resolution and is thus broadly applicable on different biological samples. Therefore, we expect that the bar-coding concept presented in this work can offer an additional, useful strategy for fluorescence-based multiplexing, implementable on a broad range of both stationary and moving samples.</p>
A microRNAome sequencing of rice mesocotyl from darkness to light exposure
GEO Series GSE136142. Oryza sativa. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Gene expression profiling of Arabidopsis arf2-6 mutant compared to Col-0 wildtype during dark-induced senescence
GEO Series GSE150569. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Data for SWATH-based Quantitative Proteomic Analysis of Morus alba L. Leaf under Ultraviolet-B radiation and Dark Treatment
<p>To investigate the response of <em>Morus alba</em> leaf to UV-B radiation and UV-B radiation followed by dark incubation (UVD), SWATH-based quantitative proteomic analysis was performed on <em>Morus alba</em> leaf of control, UV-B radiation and UV-B radiation then dark incubation. A total of 716 proteins were identified and quantified.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.