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12,393 results for “materiality”
On the relationship between methane production in anaerobic incubations of peat material and in-situ methane emissions
<p>These files are meant to accompany the publication:</p> <p><strong><span>On the relationship between methane production in anaerobic incubations of peat material and in-situ methane emissions </span></strong></p> <p><strong><span>Alexandra B. Cory<sup>1</sup>, Rachel M. Wilson<sup>1*</sup>, Olivia C. Ogles<sup>1</sup>,<sup> </sup>Patrick M. Crill<sup>2</sup>, Zhen Li<sup>3</sup>, Kuang-Yu Chang<sup>3</sup>, Samantha Bosman<sup>1</sup>, EMERGE Project Coordinators<sup>4</sup>, Isogenie Field Team<sup>5</sup>, Virginia I. Rich<sup>3</sup>, and Jeffrey P. Chanton<sup>1</sup></span></strong></p> <p><a name="_Hlk72229759"></a><sup><span>1</span></sup><span><span>Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, FL, <a name="_Hlk72229408"></a>USA</span></span></p> <p><span><sup><span>2</span></sup></span><span><span>Dept of Geological Sciences and Bolin Centre for Climate Research, Stockholm University; Stockholm, 106 91 Stockholm, Sweden</span></span></p> <p><a name="_Hlk72229459"></a><sup><span>3</span></sup><span><span>Department of Microbiology, The Ohio State University, Columbus, OH, USA</span></span></p> <p><sup><span>4</span></sup><span>Lawrence Berkeley National Laboratory; Berkeley, CA, USA.</span></p> <p><sup><span>5</span></sup><span>EMERGE Project Coordinators list of authors and affiliations appears in Acknowledgements.</span></p> <p><span> </span></p> <p><span>Corresponding author: Rachel M. Wilson (rmwilson@fsu.edu) </span></p> <p><span>Key Points:</span></p> <p><span><span>·<span> </span></span></span><span>Laboratory incubations predict field methane emissions from a peatland</span></p> <p><span><span>·<span> </span></span></span><span>Interannual variation is best represented by the modeled results</span></p> <p><span><span>·<span> </span></span></span><span>Daily-scale variation is driven by processes other than temperature and water table depth</span></p> <p><span> </span></p> <p><span>This paper is being submitted for consideration for publication and includes the following archived files:</span></p> <p>The file:</p> <p> </p> <p><span><span>(1)<span> </span></span></span>UPLOAD_chamber_CO2_and_CH4_with_T.xlsx contains 3 tabs of data measured from the field: (1) CH4 daily, (2) CO2 daily, (3) temp.</p> <p> </p> <p>The first tab, CH4 daily contains the measured methane fluxes from the field auto chambers spanning 2012-2018. Column headers are</p> <p><span> </span>Date:<span> </span>date of year measurement taken</p> <p><span> </span>DOY:<span> </span>day of year measurement taken</p> <p><span> </span>seqday: sequential day of measurement since 01/01/2002</p> <p>year: year of measurement</p> <p>site: indicates the autochamber site from which the data are measured</p> <p>cH4_flx (mg CH4/m2/d): measured methane emission in milligrams CH<sub>4</sub> per m<sup>2</sup> per day</p> <p>gC/m2/d: fluxes in grams of C per m<sup>2</sup> per day</p> <p>gC/m2/y: fluxes in grams of C per m<sup>2</sup> per year</p> <p> </p> <p>The second tab, CO2 daily contains the measured CO2 fluxes from the field auto chambers spanning 2012-2018. Column headers are similar to the CH4 daily tab revised for CO2 when appropriate.</p> <p> </p> <p>The third tab, temp provides the temperature in the peat below the surface at 50cm, 20cm and 10cm for 2012-2018.</p> <p> </p> <p><span><span>(2)<span> </span></span></span>UPLOAD_Incubation_All_Temp_Timesaeries_Data.xlsx contains the CO<sub>2</sub> and CH<sub>4</sub> production for the incubation vials at the various temperature treatments. The headers are:</p> <p>Habitat: indicates the habitat type from which the incubated peat was taken</p> <p>Depth: indicates shallow (9-19cm) peat vs. deep (25-35cm) peat</p> <p>Temp_C: indicates the temperature at which the incubation was conducted in °C</p> <p>Sample: gives a laboratory unique sample identification code</p> <p>Day: indicates day of incubation</p> <p>CH4_umoles_gDry: is the accumulated CH<sub>4</sub> production in micromoles per g dry weight of peat</p> <p>CO2_umoles_gDry: is the accumulated CO<sub>2</sub> production in micromoles per g dry weight of peat.</p> <p> </p> <p><span><span>(3)<span> </span></span></span>Fen Python Code and Bog Python Code contain all the files required to recreate the modeling results for the Fen and bog respectively. <span> </span></p> <p><span> </span></p>
Supplemental Material to "Efficiency of Virucidal Disinfectants on Wood Surfaces in Animal Husbandry"
<p>Data set for individual titre reduction of viruses on wood surfaces treated with a disinfactant in multiple experiments.</p>
Fig. 1 in New material and reinterpretation of the Late Cretaceous eutherian mammal Paranyctoides from Uzbekistan
Fig. 1. Isolated molars of the eutherian mammal Paranyctoides quadrans (Nesov, 1982) from the Bissekty Formation at Dzharakuduk, Central Kyzylkum Desert, Uzbekistan. A. URBAC 04−347, left M2, in mesial (A1), occlusal (A2, stereopair), distal (A3), and labial (A4) views (specimen subsequently lost). B. URBAC 03−215, right m1 or m2, in occlusal (B1, stereopair), mesial (B2), lingual (B3), distal (B4), and labial (B5) views.
The data on the optical properties of kombucha and kombucha proteinoids, as well as chaos calculations are provided for the paper titled "Kombucha Mats as Responsive Materials."
<p>The data on the optical properties of kombucha and kombucha proteinoids, as well as chaos calculations are provided for the paper titled "Kombucha Mats as Responsive Materials."</p>
Рис. 2. Биотопы, в которых быΛ собран материаΛ: А — старая вырубка; В — каменистая осыпь Fig. 2. Biotopes to collect the material: A — old logging site; B — rocky slope in Sabacon rossopacificus Martens, 2015 (Opiliones, Sabaconidae): A new find in Primorsky Territory
Рис. 2. Биотопы, в которых быΛ собран материаΛ: А — старая вырубка; В — каменистая осыпь Fig. 2. Biotopes to collect the material: A — old logging site; B — rocky slope
Рис. 1. Пункты сбора материаΛов в районе Ботчинского заповеΑника. Пункты сбора обозначены красными кружками, наибоΛее крупный из которых соответствует основному месту сбора — корΑону «ТепΛый КΛюч». Номера пунктов сбора соответствуют номерам в тексте при их описании. БΛизко распоΛоженные пункты сборов показаны оΑним симвоΛом Fig. 1. Points of collection of materials in the area of the Botchinsky Nature Reserve. Collection points are marked with red circles, the largest of which corresponds to the main collection point — the cordon "Teply Klyuch". The collection point numbers correspond to the numbers in the text when they are described. Closely located collection points are shown with one symbol in Fauna of the geometrid moths (Lepidoptera, Geometridae) of the eastern Sikhote-Alin in the area of the Botchinsky State Nature Reserve I: History of research and subfamilies Archiearinae, Ennominae, Desmobathrinae, and Geometrinae
Рис. 1. Пункты сбора материаΛов в районе Ботчинского заповеΑника. Пункты сбора обозначены красными кружками, наибоΛее крупный из которых соответствует основному месту сбора — корΑону «ТепΛый КΛюч». Номера пунктов сбора соответствуют номерам в тексте при их описании. БΛизко распоΛоженные пункты сборов показаны оΑним симвоΛом Fig. 1. Points of collection of materials in the area of the Botchinsky Nature Reserve. Collection points are marked with red circles, the largest of which corresponds to the main collection point — the cordon "Teply Klyuch". The collection point numbers correspond to the numbers in the text when they are described. Closely located collection points are shown with one symbol
Рис. 1. Станции сбора материаΛа по трематоΑам рыб в Мингечевирском воΑохраниΛище, 2016–2022 гг Fig. 1. Stations for collecting material on fish trematodes in the Mingachevir reservoir, 2016– 2022 in Ecological and faunistic analysis fish trematodes of the Mingechevir Reservoir
Рис. 1. Станции сбора материаΛа по трематоΑам рыб в Мингечевирском воΑохраниΛище, 2016–2022 гг Fig. 1. Stations for collecting material on fish trematodes in the Mingachevir reservoir, 2016– 2022
Рис. 1. Карта РеспубΛики Саха (Якутия) с обозначением места распоΛожения археоΛогических памятников Àжампа, Кузнец I, II Àабан-Юрях, Буор-Хая I, II, III. Fig. 1. Map of the Republic of Sakha (Yakutia) indicating the location of the archaeological sites Jampa, Kuznets I, II Daban-Yuryakh, and Buor-Khaya I, II, III in New data on the Holocene vertebrate fauna of the Middle Lena and Aldan Rivers basins (Yakutia) based on the materials from archaeological sites Jampa, Kuznets I, II Daban-Yuryakh, and Buor-Khaya I, II, III
Рис. 1. Карта РеспубΛики Саха (Якутия) с обозначением места распоΛожения археоΛогических памятников Àжампа, Кузнец I, II Àабан-Юрях, Буор-Хая I, II, III. Fig. 1. Map of the Republic of Sakha (Yakutia) indicating the location of the archaeological sites Jampa, Kuznets I, II Daban-Yuryakh, and Buor-Khaya I, II, III
Рис. 2. НижнечеΛюстные кости из шурфа Ш-1, кв. Б-3: А — собоΛь (Martes zibellina); Б — заяц-беΛяк (Lepus timidus); В — пищухи (Ochotona sp.) Fig. 2. Mandibular bones from D-1, sq. B-3: A — sable (Martes zibellina); Б — white hare (Lepus timidus); В — pikas (Ochotona sp.) in New data on the Holocene vertebrate fauna of the Middle Lena and Aldan Rivers basins (Yakutia) based on the materials from archaeological sites Jampa, Kuznets I, II Daban-Yuryakh, and Buor-Khaya I, II, III
Рис. 2. НижнечеΛюстные кости из шурфа Ш-1, кв. Б-3: А — собоΛь (Martes zibellina); Б — заяц-беΛяк (Lepus timidus); В — пищухи (Ochotona sp.) Fig. 2. Mandibular bones from D-1, sq. B-3: A — sable (Martes zibellina); Б — white hare (Lepus timidus); В — pikas (Ochotona sp.)
PREPCLIM software - additional material for publication in "Geoscientific Model Development" 2024
<p>Data set illustrating the software developed in the PREPCLIM project and used in the proposed paper:</p> <p>A Modeling System for Identification of Maize Ideotypes, optimal sowing dates and nitrogen<br>fertilization under climate change – PREPCLIM-v1</p> <p>https://doi.org/10.5194/gmd-2024-105<br>Preprint. Discussion started: 11 July 2024<br>c Author(s) 2024. CC BY 4.0 License.</p>
Lab_28_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_28_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_27_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_27_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_25_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_25_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_23_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_23_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_19_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_19_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_18_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_18_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_24_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_24_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_14_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_14_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_13_OTHER_pos - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_13_OTHER_pos - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_12_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_12_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.