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1,751 results for “molecular phylogenetics”
Figure 1 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 1. Elevation map showing the type locality of the newly described Cyrtodactylus species (black star), and its congeners included in the comparisons (black triangles): 1. Cyrtodactylus ngopensis sp. nov.; 2. C. siahaensis; 3. C. lungleiensis; 4. C. bengkhuaiai; 5. C. aaronbaueri; 6. C. montanus; 7. C. tripuraensis; 8. C. khasiensis; 9. C. jaintiaensis; 10. C. karsticola; 11. C. agarwali; 12. C. exercitus; 13. C. urbanus; 14. C. guwahatiensis; 15. C. septentrionalis; 16. C. kazirangaensis; 17. C. nagalandensis; 18. C. arunachalensis; 19. C. markuscombaii and C. martinstolli; 20. C. himalayicus; 21. C. cayuensis; 22. C. tamaiensis; 23. C. namtiram; 24. C. ayeyarwadyensis; 25. C. mandalayensis; 26. C. aunglini; 27. C. brevidactylus; 28. C. chrysopylos; 29. C. gansi; 30. C. myaleiktaung.
Figure 4 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 4. The holotype of Cyrtodactylus ngopensis sp. nov. (MZMU2553): (a) dorsal view; (b) ventral view; (c) details of dorsal pholidosis; (d) dorsal view of head; (e) lateral view of head; (f) ventral view of head.
Figure 2 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 2. (a) Ordination of the sex-pooled mountain clade (filled shapes) and lowland clades (unfilled shapes) of Cyrtodactylus species from Mizoram and Meghalaya states along the first two principal components, based on a PCA of the characters FIILamb, FIIILamc, FIVLamc, TILamc, TIILamc, TIIILamb, TVLamc, FILamc, TILama, PVT, DTR, and dorsal spot.
Figure 6 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 6. Habitats of Cyrtodactylus ngopensis sp. nov. from Ngopa, Mizoram, Northeast India: (a) collection site of the holotype at Tuikhur veng, Chawngbawla section, Ngopa; (b) collection site of paratypes at NEC road, Khuangchera section, Ngopa; (c) collection site of paratypes at Taitesena section, Ngopa.
Figure 4 in Phylogenetic analysis of the predatory plant bug subfamily Deraeocorinae (Hemiptera: Heteroptera: Miridae) based on molecular and morphological data
Figure 4. Model-based phylogenies based on the molecular-only dataset for 51 taxa. A, Bayesian inference tree using MRBAYES; B, maximum likelihood tree using RAxML. Nodal support of PP> 0.5 or BS> 50 displayed as circular and square symbols, respectively.
Figure 7 in Phylogenetic analysis of the predatory plant bug subfamily Deraeocorinae (Hemiptera: Heteroptera: Miridae) based on molecular and morphological data
Figure 7. IW parsimonious tree with K = 9 for 69 taxa, for the combined dataset computed with TNT. Mapped characters refer to unambiguous changes (referred to in the Results and Discussion sections). Filled circles represent synapomorphies and open circles represent homoplasies. Numbers above branches represent jack-knife frequencies (JK) (left) and symmetric resampling values (SR) (right). Numbers below branches represent Bremer support values (BR). Filled stars refer to nodal support of 100. Nodal support of BR> 2 or JK/SR> 50 displayed. Squares indicate the support values on major nodes, and the slash in the square indicates an unsupported clade. Red circle refers to the fossil species Amberderaeous gigophthalmus. Images in the black rectangle (top right) represent the subfamilies used: (a) Cylapinae; (b) Bryocorinae: Monaloniini; (c) Orthotylinae; (d) Bryocorinae: Dicyphini; (e) Phylinae.
Figure 2. Non-genitalic morphological character states. A in Phylogenetic analysis of the predatory plant bug subfamily Deraeocorinae (Hemiptera: Heteroptera: Miridae) based on molecular and morphological data
Figure 2. Non-genitalic morphological character states. A, Deraeocoris oliƲaceus; B, Stethoconus japonicus; C, Deraeocoris sp.; D, Termatophylum hikosanum; E, Bothynotus pilosus; F, Bothynotus sp. in ventral view; G, Saturniomiris lugens (Chan & Cassis, 2020); H, Surinamella doesburgi (from Ferreira et al., 2015); I, Eustictus grossus; J, Amberderaeous gigophthalmus in amber. Scale bars: 1 mm.
Figure 1. Deraeocorinae and feeding habit. A in Phylogenetic analysis of the predatory plant bug subfamily Deraeocorinae (Hemiptera: Heteroptera: Miridae) based on molecular and morphological data
Figure 1. Deraeocorinae and feeding habit. A, Deraeocoris sanghonami; B, Deraeocoris ulmi under bark (overwintering); C, D. ulmi, 3rd instar nymph, feeding on an aphid; D, Deraeocoris ater, 4th instar nymphs, with aphids; E, D. ater, 4th instar nymph, feeding on a moth larva; F, D. ater, adult, feeding on a moth larva.
Figure 3. Genitalic morphological character states. A-M in Phylogenetic analysis of the predatory plant bug subfamily Deraeocorinae (Hemiptera: Heteroptera: Miridae) based on molecular and morphological data
Figure 3. Genitalic morphological character states. A-M, male genitalia; N-O, female genitalia. A-F, left paramere; G-I, right paramere; J-M, endosoma; N, genital chamber; O, valvula. A, H, Deraeocoris ulmi; B, J, Alloeotomus germanicus; C, M, Deraeocoris flaƲilinea; D, Stethoconus japonicus; E, Deraeocoris claspericapilatus; F, G, L, Deraeocoris salicis; I, Deraeocoris oliƲaceus; K, Deraeocoris ater; N, Deraeocoris ribauti; O, Deraeocoris serenus. Scale bars: 0.1 mm.
Fig. 3. Phylogenetic reconstruction for 356 in Redefining the damselfly families: a comprehensive molecular phylogeny of Zygoptera (Odonata)
Fig. 3. Phylogenetic reconstruction for 356 specimens from the combined maximum likelihood analysis of 28S and 16S. Bootstrap values are shown only if below 100. Species names and classification as proposed are shown. (a) Lestoidea and Platystictoidea; (b, c) various groups; (d) Platycnemididae; (e) Coenagrionidae.
Fig. 2. Phylogenetic reconstruction for 295 in Redefining the damselfly families: a comprehensive molecular phylogeny of Zygoptera (Odonata)
Fig. 2. Phylogenetic reconstruction for 295 specimens from the combined Bayesian analysis of 28S, 16S and COI. Posterior probabilities are shown (as percentages) only if below 100%. Species names and classification as proposed are shown. (a) Lestoidea and Platystictoidea; (b, c) various groups; (d) Platycnemididae; (e) Coenagrionidae.
FIGURE 1. A–C in Aubrieta birolmutlui (Brassicaceae), a new species from Eastern Turkey with molecular phylogenetic support
FIGURE 1. A–C Habit and habitat of Aubrieta birolmutlui (arrow shows the fruiting individuals) B Close view of A. birolmutlui with flowers and leaf indumentum (A.A. Dönmez 20360) D Close view of the fruits (A.A. Dönmez 20010) (photos by Dönmez).
FIGURE 3 in Aubrieta birolmutlui (Brassicaceae), a new species from Eastern Turkey with molecular phylogenetic support
FIGURE 3. Bayesian (left) and Maximum Likelihood (right) based phylogenetic tree of Aubrieta species with the outgroup. Bayesian posterior probability (pp) values and Maximum Likelihood bootstrap values (BT) are indicated above the branches for left and right trees, respectively. Sequences obtained from Genbank named as GB and voucher ID numbers are named to original sequences.
FIGURE 2 in Aubrieta birolmutlui (Brassicaceae), a new species from Eastern Turkey with molecular phylogenetic support
FIGURE 2. Distribution of Aubrieta birolmutlui (), A. macrostyla (■), A. canescens subsp. canescens (), A. canescens subsp. cilicica (●), and A. libanotica (▲).
FIGURE 3. Frullania iriomotensis S.Hatt. A in Range extension, taxonomic note, molecular-phylogenetic relationship, and conservation of Frullania iriomotensis S.Hatt. (Marchantiophyta, Frullaniaceae), a rare liverwort previously known only from the type locality in Japan
FIGURE 3. Frullania iriomotensis S.Hatt. A. Portion of plant with gynoecium and androecium, ventral view. B. Portion of plant with gynoecium, ventral view. C. Perianth. D–E. Innermost female bracts. F. Innermost female bracteole. G. Surface of perianth. H–I. Portions of perianth beak with single-celled protuberances. J. Transverse sections of perianth. L. Portion of plant with androecium, ventral view. M. Portion of plant, ventral view. A–J. from R.L. Zhu et al. 20210126–101B (HSNU), L–M. from M. Mizutani & I. Yoshimura 5506/a (holotype: NICH).
FIGURE 2. Frullania iriomotensis S.Hatt. A–C in Range extension, taxonomic note, molecular-phylogenetic relationship, and conservation of Frullania iriomotensis S.Hatt. (Marchantiophyta, Frullaniaceae), a rare liverwort previously known only from the type locality in Japan
FIGURE 2. Frullania iriomotensis S.Hatt. A–C. Portions of plant, A. dorsal view, B–C. ventral views. D. Lateral leaf. E. Underleaf. F. Leaf lobule. G. Stylus. H. Initial lobe of branch. I. Leaf lobe cells, showing oil bodies. J. Transverse section of stem. A–B., H–I. from R.L. Zhu et al. 20210126–102 (HSNU). C–G., J. from R.L. Zhu et al. 20210126–101B (HSNU).
FIGURE 1 in Range extension, taxonomic note, molecular-phylogenetic relationship, and conservation of Frullania iriomotensis S.Hatt. (Marchantiophyta, Frullaniaceae), a rare liverwort previously known only from the type locality in Japan
FIGURE 1. Majority-rule consensus tree based on Bayesian analyses of the combined dataset of nrITS–2, rbcL and trnL–F. Bayesian posterior probabilities values (BI–PP) and ML bootstrap values (ML–BS), are indicated at branches (BI–PP/ML–BS).
FIGURE 2 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 2: Maximum Likelihood and Bayesian phylogenetic trees based on the mitochondrial Cyt-B (A) and nuclear (APOB, BRCA-1, and RAG-2) (B) sequences. Branch numbers refer to BEAST posterior probabilities (Left: PP), ML posterior probabilities (Middle: PP), and ML bootstrap support values (Right: BS). The mtDNA and nuDNA lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The abbreviations represent the sampling sites (DR: Dingri; NLM: Nielamu; YD: Yadong; MT-L: Motuo low altitude; MT-H: Motuo high altitude; BM: Bomi; BY: Bayi; ML: Milin; GBJD: Gongbujiangda; LX: Langxian).
FIGURE 1 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 1: Map of Southwest China showing the sampling localities of S. nigrescens included in this study. Locality numbers are presented in Table 1, and the lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The sample of Nepal represents the collection site of the sequence downloaded from Genbank. Shaded area represents the distribution map of S. nigrescens from the Handbook Mammals of the World and Global Biodiversity Information Facility (GBIF: https://www.gbif.org/).
FIGURE 4 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 4: A: Bayesian species tree results for S. nigrescens in Southwestern China assuming three species based on mtDNA + nuDNA. The mtDNA and nuDNA lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN; B: Divergence time estimation of the S. nigrescens derived from BEAST by using Cyt-B dataset. Numbers above the clades and in the brackets represent estimated divergence dates (Left) and the posterior probabilities (Right) of each node. The lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The abbreviations represent the sampling sites (DR: Dingri; NLM: Nielamu; YD: Yadong; MT-L: Motuo low altitude; MT-H: Motuo high altitude; BM: Bomi; BY: Bayi; ML: Milin; GBJD: Gongbujiangda; LX: Langxian).
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