Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,063
datasets available to search
ShareScore release 0.9.0
Dataset results
2,063 results for “single cell transcriptomics”
Pooled CRISPR screening with single-cell transcriptome read-out
GEO Series GSE92872. Homo sapiens; Mus musculus. 100 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptome profiling of mouse and hESC-derived pancreatic progenitors
GEO Series GSE120522. Mus musculus; Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing
GEO Series GSE121904. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing (Spatial Transcriptomics)
GEO Series GSE263976. Homo sapiens. 3 samples. Type: Other.
SUGAR-Seq enables simultaneous detection of glycans, epitopes and the transcriptome in single cells [TIL scRNA-seq]
GEO Series GSE166326. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptomics of index-sorted human bone marrow CD34+ progenitors
GEO Series GSE142999. Homo sapiens. 399 samples. Type: Expression profiling by high throughput sequencing.
Cross-species single-cell transcriptomic analysis reveals divergence of cell composition and functions in mammalian ileum epithelium [scRNA-seq_Rat]
GEO Series GSE196660. Rattus norvegicus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptomic profiling of pluripotent stem cell-derived alveolar type 2 cells expressing SFTPC-tdTomato cultured in 3D spheres, 2D submerged culture, and air-liquid interface culture wit
GEO Series GSE184142. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Integrated single-cell chromatin and transcriptomic analyses of human scalp reveal etiological insights into genetic risk for hair and skin disease
GEO Series GSE212450. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell transcriptomic analysis of the AOM/DSS-induced tumor stroma
GEO Series GSE296872. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomic analysis of rice root tips [bulk RNA-seq]
GEO Series GSE146033. Oryza sativa. 4 samples. Type: Expression profiling by high throughput sequencing.
High-throughput single-cell transcriptome profiling of plant cell types
GEO Series GSE122687. Arabidopsis thaliana. 11 samples. Type: Expression profiling by high throughput sequencing.
Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (Spatial Transcriptomics 2k)
GEO Series GSE268018. Plasmodium berghei ANKA; Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomic analysis reveals unique cell types and patterns of gene expression in the frog corneal epithelium.
GEO Series GSE154896. Xenopus laevis. 1 samples. Type: Expression profiling by high throughput sequencing.
Comparative single-cell transcriptomics of complete insect nervous systems
GEO Series GSE135810. Drosophila melanogaster. 34 samples. Type: Expression profiling by high throughput sequencing.
RoCK and ROI: a single-cell RNA-sequencing method with enhanced transcriptome information via targeted enrichment of transcripts and preselected, region-specific sequencing II
GEO Series GSE266117. Mus musculus; Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Single cell analyses of transcriptome and epigenome in neuroblastoma infiltrated bone marrow
GEO Series GSE216176. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell transcriptome profiling of the Ciona larval brain
GEO Series GSE121807. Ciona robusta. 5 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptomic profiling provides insight into maturational and developmental status of pluripotent stem cell-derived erythroblasts
GEO Series GSE111860. Homo sapiens. 728 samples. Type: Expression profiling by high throughput sequencing.
A Single-Cell Transcriptomic Atlas Characterizes Age-Related Changes of Murine Cranial Stem Cell Niches
GEO Series GSE235176. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.