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1,773 results for “Supplementary data,”
Supplementary data for Zemach et al. "Paleomagnetic imprints of rapid versus slow sulfate reduction rates in continental shelf sediments"
<p>Supplementary paleomagnetic and geochemical data for Zemach et al. "Paleomagnetic imprints of rapid versus slow sulfate reduction rates in continental shelf sediments", submitted to JGR</p>
supplementary data
<p><span>The following supporting information can be downloaded at: www.mdpi.com/xxx/s1, Figure S1: Predicted structure of TaPLD9. Figure S2: Differences in the C2 domain of α-subtype C2-PLDs versus non-α-subtype C2-PLDs. Figure S3: Structural features of the putative calcium binding site in the catalytic site of PLDs. Figure S4: Structural features of the C2 domain of crop PI-PLCs. Figure S5: Predicted structures of TaPLD1, TaPLD9, TaPLD10, TaDGK1, TaDGK5 and TaPI-PLC2-1A. The structures were predicted by AlphaFold2. The colorcode corresponds to model confidence as defined by AlphaFold2. AlphaFold2 </span><span>produces a per-residue confidence score, named “predicted local distance difference test” (pLDDT), that ranges between</span><span> 0 and 100. Table S1: PLD proteins in a selection of model and crop plants; Table S2: DGK proteins in a selection of model and crop plants; Table S3: PI-LPC proteins in a selection of model and crop plants Table S4: RESPIRATORY BURST OXIDASE HOMOLOGUEs (RBOHs) proteins in a selection of model and crop plants. </span></p>
Supplementary Data
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Supplementary Data from manuscript entitled: Cloud processing dominates the vertical aerosol profiles in marine air masses over the Great Barrier Reef
<p>The data used in the manuscript "Cloud processing dominates the vertical aerosol profiles in marine air masses over the Great Barrier Reef" is available. It contains information from different instruments on board the research aircraft. The manuscript describes the instrumentation details. There is a read_me file in each folder with further information.</p>
Supplementary data for "Undergraduate Gender Diversity and the Direction of Scientific Research" (PART 1)
<p>All files in this depository contain Microsoft Academic Graph data (April 2018 Extract) used for "Undergraduate Gender Diversity and the Direction of Scientific Research" </p> <p>The attribution license of the Microsoft Academic Graph is <a href="https://opendatacommons.org/licenses/by/1-0/">ODC-BY</a></p> <p>Please cite the following paper in publications and reports using the Microsoft Academic Graph:</p> <p>Arnab Sinha, Zhihong Shen, Yang Song, Hao Ma, Darrin Eide, Bo-June (Paul) Hsu, and Kuansan Wang. 2015. An Overview of Microsoft Academic Service (MA) and Applications. In Proceedings of the 24th International Conference on World Wide Web (WWW '15 Companion). ACM, New York, NY, USA, 243-246. DOI=http://dx.doi.org/10.1145/2740908.2742839</p> <p>All files are in the repository are original and are the full extract. However, PaperAbstractInvertedIndex.txt has been split into 9 parts because the original file is 137GB, which exceeds the upload limit of Zenodo. PaperAbstractInvertedIndex_3.txt to PaperAbstractInvertedIndex_9.txt are available in a separate repository (Supplementary data for "Undergraduate Gender Diversity and the Direction of Scientific Research" (PART 2) DOI=10.5281/zenodo.11388912). </p> <p>To replicate the results in "Undergraduate Gender Diversity and the Direction of Scientific Research", please decompress all files (except for the PaperAbstractInvertedIndex files) and place all files in "data/raw/MAG/". The associated code repository can be found AEA Data and Code Repository openicpsr-204361.</p> <p> </p> <ul> <li>Affiliations.txt <ul> <li>Description Type</li> <li>Affiliation ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Paper count</li> <li>Citation count </li> </ul> </li> <li>Authors.txt <ul> <li>Author ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Last known affiliation ID</li> <li>Paper count</li> <li>Citation count</li> </ul> </li> <li>FieldsOfStudy.txt <ul> <li>Field of study ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Level</li> <li>Paper count</li> <li>Citation count</li> </ul> </li> <li>FieldsOfStudyChildren.txt <ul> <li>Field of study ID</li> <li>Child field of study ID </li> </ul> </li> <li>Journals.txt <ul> <li>Journal ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Paper count</li> <li>Citation count </li> </ul> </li> <li>Papers.txt <ul> <li>Paper ID</li> <li>Rank</li> <li>Doi</li> <li>Doc type</li> <li>Paper title</li> <li>Original title</li> <li>Book title</li> <li>Year</li> <li>Date</li> <li>Publisher</li> <li>Journal ID </li> <li>Conference Series ID</li> <li>Conference instance ID</li> <li>Volume</li> <li>Issue</li> <li>First page</li> <li>Last page </li> <li>Reference count</li> <li>Citation count</li> <li>Estimated citation </li> </ul> </li> <li>PaperAbstractInvertedIndex.txt <ul> <li>Paper ID</li> <li>Abstract</li> </ul> </li> <li>PaperAuthorAffiliations.txt <ul> <li>Paper ID</li> <li>Author ID</li> <li>Affiliation ID</li> <li>Author sequence number </li> </ul> </li> <li>PaperFieldsOfStudy.txt <ul> <li>Paper ID</li> <li>Field of study ID</li> <li>Similarity</li> </ul> </li> <li>PaperReferences.txt <ul> <li>Paper ID</li> <li>Paper reference ID <br><br></li> </ul> </li> </ul>
Supplementary data for "Undergraduate Gender Diversity and the Direction of Scientific Research" (PART 2)
<p>All files except for "MTI.zip" in this depository are Microsoft Academic Graph data (April 2018 Extract) used for "Undergraduate Gender Diversity and the Direction of Scientific Research" </p> <p>The attribution license of the Microsoft Academic Graph is <a href="https://opendatacommons.org/licenses/by/1-0/">ODC-BY</a></p> <p>Please cite the following paper in publications and reports using the Microsoft Academic Graph:</p> <p>Arnab Sinha, Zhihong Shen, Yang Song, Hao Ma, Darrin Eide, Bo-June (Paul) Hsu, and Kuansan Wang. 2015. An Overview of Microsoft Academic Service (MA) and Applications. In Proceedings of the 24th International Conference on World Wide Web (WWW '15 Companion). ACM, New York, NY, USA, 243-246. DOI=http://dx.doi.org/10.1145/2740908.2742839</p> <p>PaperAbstractInvertedIndex.txt has been split into 9 parts because the original file is 137GB, which exceeds the upload limit of Zenodo. PaperAbstractInvertedIndex_3.txt to PaperAbstractInvertedIndex_9.txt are available in this repository. See Supplementary data for "Undergraduate Gender Diversity and the Direction of Scientific Research" (PART 1) DOI=10.5281/zenodo.11388912 for remaining data.</p> <p>MTI.zip contains output from Medical Text Indexer. Specifically, the National Library of Medicine offers an online tool, Medical Text Indexer (MTI) (https://lhncbc.nlm.nih.gov/ii/tools/MTI.html), to provide indexing recommendations based on the Medical Subject Headings (MeSH) vocabulary. Specifically, we uploaded to the first 2500 characters of the title and abstract of all papers in our sample in batch mode (Accessed in October 2021). A copy of the output of the MTI is provided as part of this archive "papers_coed_for_MTI_1_output.txt.zip", "papers_coed_for_MTI_2_output.txt.zip", "papers_coed_for_MTI_3_output.txt.zip"</p> <p>To replicate the results in "Undergraduate Gender Diversity and the Direction of Scientific Research", do <strong>not</strong> decompress the PaperAbstractInvertedIndex files and MTI files. Place the PaperAbstractInvertedIndex files in the "data/raw/MAG" directory and place the MTI files in the "data/raw/MTI" directory. The associated code repository can be found at AEA Data and Code Repository (openicpsr-204361).</p> <p> </p> <ul> <li>Affiliations.txt <ul> <li>Description Type</li> <li>Affiliation ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Paper count</li> <li>Citation count </li> </ul> </li> <li>Authors.txt <ul> <li>Author ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Last known affiliation ID</li> <li>Paper count</li> <li>Citation count</li> </ul> </li> <li>FieldsOfStudy.txt <ul> <li>Field of study ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Level</li> <li>Paper count</li> <li>Citation count</li> </ul> </li> <li>FieldsOfStudyChildren.txt <ul> <li>Field of study ID</li> <li>Child field of study ID </li> </ul> </li> <li>Journals.txt <ul> <li>Journal ID</li> <li>Rank</li> <li>Normalized name</li> <li>Display name</li> <li>Paper count</li> <li>Citation count </li> </ul> </li> <li>Papers.txt <ul> <li>Paper ID</li> <li>Rank</li> <li>Doi</li> <li>Doc type</li> <li>Paper title</li> <li>Original title</li> <li>Book title</li> <li>Year</li> <li>Date</li> <li>Publisher</li> <li>Journal ID </li> <li>Conference Series ID</li> <li>Conference instance ID</li> <li>Volume</li> <li>Issue</li> <li>First page</li> <li>Last page </li> <li>Reference count</li> <li>Citation count</li> <li>Estimated citation </li> </ul> </li> <li>PaperAbstractInvertedIndex.txt <ul> <li>Paper ID</li> <li>Abstract</li> </ul> </li> <li>PaperAuthorAffiliations.txt <ul> <li>Paper ID</li> <li>Author ID</li> <li>Affiliation ID</li> <li>Author sequence number </li> </ul> </li> <li>PaperFieldsOfStudy.txt <ul> <li>Paper ID</li> <li>Field of study ID</li> <li>Similarity</li> </ul> </li> <li>PaperReferences.txt <ul> <li>Paper ID</li> <li>Paper reference ID <br><br></li> </ul> </li> </ul>
Supplementary information to the data note The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976"
<p><span>Supplementary information to the data note: "</span>The genome sequence of the Sandhill Rustic moth <em>Luperina nickerlii </em>(Freyer, 1845) subspecies <em>leechi</em> Goater, 1976" .</p> <p><span>The LSU analysis of the <em><span>Luperina nickerlii</span></em> subsp. <em><span>leechi</span></em> genome, presenting evidence that this is a ZO female. </span></p>
Supplementary data Guo et al. Brachiopod morphological evolution
<p>Supplementary Data and Code of Guo et al. (2024, Nature Ecology & Evolution)</p> <p>Contents:</p> <p>1. The folder 'Morphological_data' includes the compiled morphological matrices, calculated distance matrices, and calculated disparities.<br>The distance matrices and disparities can be used to plot figures.<br>References used to encode continuous characters are provided in the Morphological_data_origination.xlsx.<br>For a detailed description of characters, see Supplementary Information of the paper.</p> <p>2. The folder 'Original_data' includes occurrences downloaded from the PBDB and Permian-Jurassic occurrences added by Guo et al. (2023).</p> <p>3. The folder 'R_script' includes functions and scripts to perform the analysis.</p> <p>4. The folder 'Revised_data' includes the revised occurrence data.</p>
Supplementary file 2; Photographs of various camp survey locations that illustrate various characteristics of the study site and points of rationale for the approach taken to data collection, analysis and interpretation
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Supplementary Data Table for Bell, Isaac and Katz-Rosene, Ryan "The Contested Futures of Just Transition in Canada's Energy Sector"
<p>This is the Supplementary Data Table for "The Contested Futures of Just Transition in Canada's Energy Sector," by Isaac Bell and Ryan Katz-Rosene, published in Studies In Political Economy.</p>
Supplementary Data for "Molecular Docking, ADMET, Synthesis and Evaluation of New Indomethacin Hydrazide Derivatives as Antibacterial Agents"
<p>This supplementary data file contains additional information supporting the findings presented in the research article "<strong>Molecular Docking, ADMET, Synthesis and Evaluation of New Indomethacin Hydrazide Derivatives as Antibacterial Agents</strong>". The data includes:</p> <ul> <li>Infrared (IR) spectra of the synthesized compounds</li> <li>Proton nuclear magnetic resonance (H NMR) spectra of the synthesized compounds</li> <li>Minimum inhibitory concentration (MIC) and zone of inhibition (ZOI) data for the synthesized compounds against tested microorganisms</li> </ul>
Supplementary geochronological data for "A revised chronostratigraphy of the Triassic-Jurassic Moenave Formation, USA: Implications for timing of continental climate change"
<p>Geochronological data (supplemental tables and figure) related to the article "A revised chronostratigraphy of the Triassic-Jurassic Moenave Formation, USA: Implications for timing of continental climate change", submitted to the Geological Society of America Bulletin.</p>
Supplementary data for "Crawling, Climbing, Perching, and Flying by FiBa Soft Robots"
<p>Supplementary Information for paper "Crawling, climbing, perching, and flying by FiBa soft robots". <a href="https://doi-org.ezp-prod1.hul.harvard.edu/10.1126/scirobotics.adk4533">DOI: 10.1126/scirobotics.adk4533</a> </p>
Double Trouble : Multiple infections and the coevolution of virulence-resistance in structured host-parasite populations - Scripts, Data and Supplementary Material
<p>Supplementary material</p> <p> </p> <p>Contains the Mathematica notebook for analytical and numerical computations, and figure generation.</p> <p>An Rscript used to reproduce the coevolutionary figures from section "Coevolution"</p> <p>The set of appendices in a .pdf file.</p>
Supplementary data
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Supplementary material 3 from: Bragança PHN, Amorim PF, Costa WJEM (2018) Pantanodontidae (Teleostei, Cyprinodontiformes), the sister group to all other cyprinodontoid killifishes as inferred by molecular data. Zoosystematics and Evolution 94(1): 137-145. https://doi.org/10.3897/zse.94.22173
Maximum Likelihood (A) and Bayesian Inference (B) analysis including the 16S gene. : Explanation note: Maximum Likelihood (A) and Bayesian Inference (B) analysis including segments of the nuclear genes ENC1, GLYT, MYH6, SH3PX3, RAG1, the mitochondrial genes 16S and first and second codon position of the COI. In ML, bootstrap values under 50 are not represented, and posterior probability values under 0.5 are not represented in BI.
Supplementary material 5 from: Bragança PHN, Amorim PF, Costa WJEM (2018) Pantanodontidae (Teleostei, Cyprinodontiformes), the sister group to all other cyprinodontoid killifishes as inferred by molecular data. Zoosystematics and Evolution 94(1): 137-145. https://doi.org/10.3897/zse.94.22173
Bayesian Inference tree : Explanation note: Bayesian inference tree comprising segments of the nuclear genes ENC1, GLYT, MYH6, SH3PX3, RAG1 and first and second codon position of the mitochondrial gene COI (5,083 bp). Numbers on each node are posterior probablity values; values under 50 are not present in the tree.
Supplementary material 7 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Sharing and publishing your data" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
Supplementary material 6 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Analyzing your data and handling the outputs" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
Supplementary material 4 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Saving and backing up your data" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.