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3,696 results for “reference”
PacBio IsoSeq reference transcriptomes for Pinus taeda L.
<p>Fusiform rust disease, caused by the endemic fungus <i>Cronartium quercuum</i> f. sp. <i>fusiforme</i>, is the most damaging disease affecting economically important pine species in the southeast United States. In this report, we detail the genomic localization and sequence-level discovery of candidate race-nonspecific broad-spectrum fusiform rust resistance genes in <i>Pinus taeda </i>L. Two full-sib families, each with ~1000 progeny, were challenged with a complex inoculum consisting of over 150 pathogen isolates. High-density linkage mapping revealed three QTL distributed on two linkage groups. The two QTL on linkage group 2 were additive with respect to their effects on the probability of disease outcome. All three QTL were validated using a population of 2057 cloned pine genotypes in a six-year-old multi-environmental field trial. As a complement to the QTL mapping approach, bulked segregant RNAseq analysis revealed a small number of candidate nucleotide binding leucine rich repeat genes harboring SNP significantly associated with disease resistance. The results of this study demonstrate that single qualitative resistance genes can confer effective resistance against genetically diverse mixtures of an endemic pathogen.</p>
Data referring to submergence stories from NW Europe and Australia
<p>In support of a manuscript submitted to 'Royal Society Open Science' about submergence stories from NW Europe, I submit a data set showing the locations of these stories, the present depths (below sea level) to which they refer, and the minimum ages calculated, with a final column listing data sources for sea-level palaeodata. Each column is labelled at the top. Data from Australia (previously published) are given for comparison.</p>
Resolving Organoid Brain Region Identities by Mapping Single-Cell Genomic Data to Reference Atlases
<p>Data underlying the figures in the publication “Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases”, published in <em>Cell Stem Cell, </em><strong>2021</strong><em>, </em>28, 1148–1159.</p> <p><a href="https://www.sciencedirect.com/science/article/pii/S1934590921000655">https://www.sciencedirect.com/science/article/pii/S1934590921000655</a></p> <p>Table of contents:</p> <p><strong>1. patscreen_srt.rds</strong>; Numerical data for <em>Figure 7</em>: RNA-seq data of a patterning screen in organoids with an array of small molecules. The dataset is in the rds data format, which can be opened in the R programming language using the function `readRDS()`. Once opened, the dataset is a Seurat object (https://satijalab.org/seurat/) and contains both the transcript counts and the metadata for all samples in the screen. The raw data used in figure 7 was also deposited in ArrayExpress (<a href="https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10037/">https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10037/</a>)</p>
Pt‑40%Rh Versus Pt‑6%Rh Thermocouples: An emf‑Temperature Reference Function for the Temperature Range 0 °C to 1769 °C
<p>Data for the associated paper, DOI https://doi.org/10.1007/s10765-021-02895-w</p> <p>The paper describes the metrological characterization of the highly stable Pt40%Rh/Pt-6%Rh thermocouples to determine their reference function in the temperature range between 0 °C and 1769 °C. The preparation of the Pt-40%Rh/Pt-6%Rh thermocouples is described, as well as the measurement procedures and the measurement results of comparison and fxed point measurements for the determination of the reference function with low uncertainties.</p>
Reference-Guided Scaffolding of Worldwide Fraxinus Species, Set 1
<p>Following the recent assembly of the chromosome-level <em>Fraxinus pennsylvanica </em>genome, we used the assembly to construct reference-guided assemblies of 27 previously sequenced <em>Fraxinus </em>taxa, including <em>Fraxinus excelsior</em>. Thus we present a significant step forward in genomic resources for research and protection of <em>Fraxinus </em>species.</p>
PubMed inner references obtained from five freely available bibliographic data sources
<p>This dataset contains PMID-to-PMID citations of PubMed 2020 Baseline extracted from five freely available bibliographic data sources (COCI, Dimensions, MAG, NIH-OCC, and S2ORC).</p> <p>Each line contains one citing PubMed document and its cited references. The citing and cited documents are separated by a tab (\t) and the cited references are separated by a semicolon (;).</p>
DNA sequences of transgenes detected via environmental DNA (raw ABI files, processed FASTA files, and reference alignments)
We demonstrate that simple, non-invasive environmental DNA (eDNA) methods can detect transgenes of genetically modified (GM) animals from terrestrial and aquatic sources in invertebrate and vertebrate systems. We detected transgenic fragments between 82-234 bp through targeted PCR amplification of environmental DNA extracted from food media of GM fruit flies (<i>Drosophila melanogaster</i>), feces, urine, and saliva of GM laboratory mice (<i>Mus musculus</i>), and aquarium water of GM tetra fish (<i>Gymnocorymbus ternetzi</i>). With rapidly growing accessibility of genome-editing technologies such as CRISPR, the prevalence and diversity of GM animals will increase dramatically. GM animals have already been released into the wild with more releases planned in the future. eDNA methods have the potential to address the critical need for sensitive, accurate, and cost-effective detection and monitoring of GM animals and their transgenes in nature.
Figure 21 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 21. Paralona pigra, female, post-abdomen.
Figure 22 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 22. Pleuroxus scopuliferus, post-abdomen.
Figure 18 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 18. Ilyocryptus brevidentatus, female, post-abdomen.
Figure 20 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 20. Paralona pigra, female, valve posterior-ventral angle with long setae.
Figure 17 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 17. Daphnia (Ctenodaphnia) dadayana, juvenile, head with horn.
Figure 19 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 19. Macrothrix hirsuticornis, female, antennulae.
Figure 16 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 16. Daphnia (Ctenodaphnia) dadayana, female, post-abdominal claw.
Figure 15 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 15. Daphnia (Ctenodaphnia) dadayana, female, post-abdomen.
Figure 14 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 14. Ceriodaphnia dubia, female, post-abdomen.
Figure 13 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 13. Camptocercus aloniceps, female, post-abdominal claw. Scale bar: 0.05 mm.
Figure 10 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 10. Alona weinecki, female, post-abdomen.
Figure 11 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 11. Bosmina (Neobosmina) chilensis, female.
Figure 9 in A limnological reconnaissance of the Falkland Islands; with particular reference to the waterfleas (Arthropoda: Anomopoda)
Figure 9. Alona cf. guttata, female, post-abdomen. Scale bar: 0.5 mm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.