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Fig. 6 in Unexpected absence of exo-erythrocytic merogony during high gametocytaemia in two species of Haemoproteus (Haemosporida: Haemoproteidae), including description of Haemoproteus angustus n. sp. (lineage hCWT7) and a report of previously unknown residual bodies during in vitro gametogenesis

Fig. 6. Bayesian Inference tree (A) based on partial (478 bp) cytb sequences of Haemoproteus angustus n. sp. (lineage hCWT7) and the 20 closest related Haemoproteus lineages. Bayesian posterior probabilities and Maximum Likelihood bootstrap values were indicated above and below nodes, respectively. For each lineage, representative GenBank accession numbers and MalAvi lineage codes (if available) are indicated as well as the most common bird host. The scale bar indicates the expected mean number of substitutions per site according to the model of sequence evolution applied. Images B and C show the Median-Joining DNA haplotype network of partial (478 bp) cytb sequences of H. angustus hCWT7 and the 20 closest related Haemoproteus lineages. The upper image (B) shows the host distribution, and the lower image (C) depicts the geographic distribution according to the United Nations geoscheme. Each circle represents a unique haplotype/lineage. The frequency of each lineage is indicated for all haplotypes with more than one record and roughly corresponds to the size of circles. Bars on branches indicate the number of substitutions between two haplotypes. Small white circles represent median vectors, which are hypothetical (often ancestral or unsampled) sequences required to connect existing haplotypes with maximum parsimony.

Fig. 3 in Unexpected absence of exo-erythrocytic merogony during high gametocytaemia in two species of Haemoproteus (Haemosporida: Haemoproteidae), including description of Haemoproteus angustus n. sp. (lineage hCWT7) and a report of previously unknown residual bodies during in vitro gametogenesis

Fig. 3. Comparison of fully grown gametocytes of Haemoproteus angustus n. sp. (lineage hCWT7) from the blood of Curruca communis (A–D), H. belopolskyi (lineage hHIICT1) from the blood of Hippolais icterina (E–H) as well as H. parabelopolskyi (hSYAT2) (I–L), H. pallidulus (hSYAT3) (M–P), H. homogeneae (hSYAT16) (Q–T) and H. majoris (hWW2) (U–X) from the blood of Sylvia atricapilla. Note: the markedly attenuated gametocytes of the new species (A–D), which are not present in other Haemoproteus parasites (E–X); the fully grown gametocytes of H. belopolskyi (F, H) and H. parabelopolskyi (J, L) are bigger than those of H. angustus n. sp.; the pigment granules are predominantly roundish and small in H. pallidulus (M–P); the fully grown gametocytes are small and do not reach poles of infected erythrocytes in H. homogeneae (R, T); the erythrocyte nuclei are displaced laterally by H. majoris (V, X) – all these feature are not characteristic of H. angustus sp. nov. Symbols are the same as in Fig. 2. Giemsa-stained thin blood films. Scale bar = 10 µm.

Fig. 1. Bayesian phylogenetic tree constructed using partial cytochrome b in Unexpected absence of exo-erythrocytic merogony during high gametocytaemia in two species of Haemoproteus (Haemosporida: Haemoproteidae), including description of Haemoproteus angustus n. sp. (lineage hCWT7) and a report of previously unknown residual bodies during in vitro gametogenesis

Fig. 1. Bayesian phylogenetic tree constructed using partial cytochrome b sequences of 61 lineages of Haemoproteus, 4 lineages of Plasmodium, and Leucocytozoon sp. lSISKIN2 as outgroup. Posterior probabilities higher than 0.8 are indicated close to the respective nodes. Red font indicates the parasite lineage described in this publication. Vertical bars (A–D) show groups of closely related lineages, which complete development and produce gametocytes only in non-passerines (A, D), both non-passerines and passerines (B), and only passerines (C). Blue font indicates Haemoproteus species, which develop in non-passerine avian hosts, which are indicated by symbols (● – Psittaciformes; ∎ - Coraciiformes; ▴ - Strigiformes; ◆ - Anseriformes; ★ - Charadriiformes; ♥ - Pelecaniformes; ⋄ - Piciformes; ⊠ - Sphenisciformes; Ω - Musophagiformes; § - Trochiliformes; Ψ – Falconiformes; Σ – Columbiformes; Φ - Galliformes). Lineage names were provided (according to MalAvi database), followed by parasite species names and sequence GenBank accession numbers.

Fig. 5. Haemoproteus angustus n in Unexpected absence of exo-erythrocytic merogony during high gametocytaemia in two species of Haemoproteus (Haemosporida: Haemoproteidae), including description of Haemoproteus angustus n. sp. (lineage hCWT7) and a report of previously unknown residual bodies during in vitro gametogenesis

Fig. 5. Haemoproteus angustus n. sp. (lineage hCWT7) gametogenesis (A–H) and ookinete development (I–L) in vitro: A, B – initial stages of rounding up of gametocytes after the exposure of infected blood to air; C, E – rounded up macrogametocyte (C) and microgametocyte (E); F – the exflagellation; G – microgamete; H – fertilization; I – initial stage of ookinete development; J – medium differentiated ookinete; K – nearly mature ookinete with a residual body; L – mature ookinete without residual body. Note: the presence of several small residual bodies in erythrocytes containing gametocytes, which were preparing to escape from infected erythrocytes (A-C, E) – a unique character of this species during the initial stage of gametogenesis. Short triangle wide arrows – residual bodies; triangle arrowhead – macrogamete; triangle wide arrowheads – microgametes; short barbed arrows – finger-like outgrowth; long barbed arrows – apical end of developing ookinete; simple wide arrowhead – residual body of ookinete. Other symbols as in Fig. 2. Giemsa-stained thin blood films. Scale bar = 10 µm.

Fig. 2 in A report of 30 unrecorded bacterial species in Korea, isolated from marine ecosystems in 2021

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study and their closest bacterial species in classes Alphaproteobacteria, Bacilli, Cytophagia, Flavobacteriia, Fusobacteriia, and Clostridia. Bootstrap values over 70% are shown.

Fig. 2 in A report of 24 unrecorded bacterial species in Korea belonging to the Phyla Proteobacteria and Bacteroidetes isolated in 2020

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Pedobacter HMG1331, Mucilaginibacter HMG2653, Aquimarina KYW2188, and Flavihumibacter SM8. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.05 substitutions per nucleotide position, respectively.

Fig. 1 in A report of 24 unrecorded bacterial species in Korea belonging to the Phyla Proteobacteria and Bacteroidetes isolated in 2020

Fig. 1. Transmission electron micrographs of the strains isolated in this study. Strains: a, SM8; b, KYW2188; c, HMG1331; d, HMG2653; e, JHSTF-R13; f, HMG1343; g, CAU 1621; h, BDTF-M8; i, MA20; j, HMG2551; k, LW_53_Sal; l, SO215; m, AsT1; n, L1_74_Sal; o, BT648; p, KYW1991; q, L1_34_Aci; r, JHSTF-R6; s, L1_104_Sal; t, LW_92_Aci; u, DM7; v, HMG1413; w, MA7; x, 17bor-14.

Fig. 1 in A report of 30 unrecorded bacterial species in Korea, isolated from marine ecosystems in 2021

Fig. 1. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study and their closest bacterial species in the class Gammaproteobacteria. Bootstrap values over 70% are shown.

Fig. 3 in A report of 24 unrecorded bacterial species in Korea belonging to the Phyla Proteobacteria and Bacteroidetes isolated in 2020

Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Serratia SO215, Citrobacter MA20, Pantoea HMG2551, Providencia LW_53_Sal, Tolumonas JH- STF-R13, Oceanisphaera HMG1343, Halomonas KYW1991, Marinobacter CAU 1621, Microbulbifer BDTF-M8, Azotobacter DM7, Pseudomonas JHSTF-R6, Pseudomonas L1_104_Sal, Pseudomonas LW 92 Aci, Steroidobacter HMG1413, Lysobacter BT648, Stenotrophomonas L1_74_Sal, Stenotrophomonas MA7, Maritimibacter AST1 and Simulacricoccus 17bor-14. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.

Fig. 3 in A report of 30 unrecorded bacterial species in Korea, isolated from marine ecosystems in 2021

Fig. 3. Transmission electron micrographs of scanning electron micrographs of cells of the strain isolated in this study. Strains: 1, HNI- BRBA38; 2, HNIBRBA54; 3, HNIBRBA100; 4, HNIBRBA151; 5, HNIBRBA189; 6, HNIBRBA220; 7, HNIBRBA244; 8, HNIBRBA255; 9, HNIBRBA270; 10, HNIBRBA272; 11, HNIBRBA274; 12, HNIBRBA350; 13, HNIBRBA370; 14, HNIBRBA397; 15, HNIBRBA406; 16, HNIBRBA489; 17, HNIBRBA506; 18, HNIBRBA601; 19, HNIBRBA666; 20, HNIBRBA682; 21, HNIBRBA683; 22, HNIBRBA684; 23, HNIBRBA685; 24, HNIBRBA688; 25, HNIBRBA773; 26, HNIBRBA833; 27, HNIBRBA853; 28, HNIBRBA855; 29, HNIBRBA866; 30, HNIBRBA1036. Scale bars are indicated in parenthesis after strain ID.

Fig. 3 in A report of seven unrecorded bacterial species in Korea, isolated from marine sediment

Fig. 3. Neighbor-joining (NJ) phylogenetic tree based on the 16S rRNA gene sequences between the strains isolated in this study belonging to the order Flavobacteriales. A phylogenetic tree was constructed with their relatives of the genera Gramella, Gillisia, and Arenibacter. The numbers on the nodes indicate the bootstrap values (>70%). Bar, 0.02 accumulated changes per nucleotide, respectively.

Fig. 2 in A report of seven unrecorded bacterial species in Korea, isolated from marine sediment

Fig. 2. Neighbor-joining (NJ) phylogenetic tree based on the 16S rRNA gene sequences between the strains isolated in this study belonging to the order Bacillales. A phylogenetic tree was constructed with their relatives of the genera Mesobacillus, Paenibacillus, Fictibacillus, and Brevibacillus. The numbers on the nodes indicate the bootstrap values (>70%). Bar, 0.02 accumulated changes per nucleotide, respectively.

Fig. 1 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021

Fig. 1. Transmission electron micrographs of cells of the strains belonging to the Betaproteobacteria and Gammaproteobacteria. The strains were cultured at their optimal growth conditions. Strain: 1, HMG1432; 2, HMG1944; 3, HMG2081; 4, HMG5310; 5, SATFR7; 6, ATS74; 7, PS9; 8, 18JY64; 9, BT33; 10, MMS21YDR2; 11, CAU 1658; 12, 16_SB_L4; 13, G12; 14, CAU 1657; 15, 15G113; 16, CAU 1650; 17, MMS21M35; 18, CAU 1655; 19, 17_H6_M9; 20, GJ5111; 21, G510; 22, CAU 1666; 23, SATFR3; 24, AMTFM1; 25, AMTFM15; 26, AMTFR2; 27, DSTFM2; 28, BT758; 29, JHKTFM108; 30, DSTFM15.

Fig. 3 in A report of sixteen unrecorded haloarchaea species in Korea, isolated from a solar saltern

Fig. 3. Neighbor-joining (NJ) phylogenetic tree based on the 16S rRNA gene sequences between the strains isolated in this study belonging to the order Haloferacales. A phylogenetic tree was constructed with their relatives of the genera Haloferax and Halorubrum. The numbers on the nodes indicate the bootstrap values (>70%). Bar, 0.02 accumulated changes per nucleotide, respectively.

Fig. 1 in A report of sixteen unrecorded haloarchaea species in Korea, isolated from a solar saltern

Fig. 1. Transmission electron micrographs of the strains isolated in this study. Strains: A, MBLA0001; B, MBLA0010; C, MBLA0028; D, MBLA0034; E, MBLA0042; F, MBLA0071; G, MBLA0123; H, MBLA0129; I, MBLA0131; J, MBLA0133; K, MBLA0135; L, MBLA0137; M, MBLA0140; N, MBLA0145; O, MBLA0170; P, MBLA0217.

Fig. 1 in A report of seven unrecorded bacterial species in Korea, isolated from marine sediment

Fig. 1. Transmission electron micrographs of the strains isolated in this study. Strains: A. MBLB1969; B. MBLB2441; C. MBLB1992; D. MBLB2443; E. MBLB2135; F. MBLB2428; G. MBLB2431.

Fig. 3 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021

Fig. 3. Neighborjoining (NJ) phylogenetic tree based on 16S rRNA gene sequences, showing the relationships between the strains identified in this study and their relatives of the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, Lysobacterales, Moraxellales, Oceanospirillales, Pseudomonadales, and Vibrionales in the class Gammaproteobacteria. Black dots indicate that the corresponding nodes were also recovered in the trees generated using the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values (>70%) based on 1,000 replications are indicated at branch points (NJ/ML/MP). The scale bar represents a 0.02 nucleotide sequence divergence.

Fig. 2 in A report of sixteen unrecorded haloarchaea species in Korea, isolated from a solar saltern

Fig. 2. Neighbor-joining (NJ) phylogenetic tree based on the 16S rRNA gene sequences between the strains isolated in this study belonging to the order Halobacteriales. A phylogenetic tree was constructed with their relatives of the genera Halobacterium, Haloplanus, Salarchaeum, Haloarcula, Halomicroarcula, and Halorientalis. The numbers on the nodes indicate the bootstrap values (>70%). Bar, 0.02 accumulated changes per nucleotide, respectively.

Fig. 2 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021

Fig. 2. Neighborjoining (NJ) phylogenetic tree based on 16S rRNA gene sequences, showing the relationships between the strains identified in this study and their relatives of the order Burkholderiales in the class Betaproteobacteira. Black dots indicate that the corresponding nodes were also recovered in the trees generated using the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values (>70%) based on 1,000 replications are indicated at branch points (NJ/ML/MP). The scale bar represents a 0.02 nucleotide sequence divergence.