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1,773 results for “Supplementary data,”
Supplementary material 3 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Organizing your data" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
Supplementary material 5 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Getting your data ready for analysis" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
Supplementary material 2 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439
A draft guide that corresponds with the "Planning your project" row of the RDM rubric. Suggested points of customization are highlighted in yellow (discipline-specific) and red (institution-specific).
Supplementary material 5 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Explanation of header and data: Dist is the distance to the zero line (edge) into the forest in m; Month is the period of time before litterfall was sampled (see "Litterfall" for details); DryMass is the weight of the dried litter in g, Site is either west-facing or east-facing (see "Measurement site" for details).
Supplementary material 3 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Explanation of header and data: Dist is the distance from the zero line (edge) into the arable land in m, 0 is the zero line; Crop refers to the species (see "Biomass of crops" for more details); DryMass is given in g per m2.
Supplementary material 4 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Explanation of header and data: Site is either west-facing or east-facing site (see "Measurement site"); Dist is the distance from the zero line (edge) to the forest interior in m, 0 is the zero line; Tree number refers to a unique tree (number) in the plot (letter); Perimeter is measured at 1.30 m from the ground and is given in cm; BHD is derived from the perimeter and given in cm; Height is the measured height of the trees in m.
Supplementary material 6 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Explanation of header and data: Site is either west-facing or east-facing (see "Measurement site"); DistToEdge is the distance to the zero line (edge) in m, negative values are in the forest, positive values are in the arable land, zero is the edge; Repetition is the number of repetitions in the lab; Depth is measured in cm and is the depth of soil sampling ±3 cm; Ctot is the percentage (%) of total soil carbon content in the tested soil sample; Ntot is the percentage (%) of total soil nitrogen content in the tested soil sample and pH is the numeric scale to specify the acidity or basicity of the soil sample in solution.
Supplementary material 2 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Measured values are indicated in the header by the variable (e.g. "SoilMoist") followed by the distance to the zero line (e.g. 30, indicated by XX in the description below). Date.Time is given as YYYY-MM-DD HH:MM:SS; SoilMoistXX is the soil moisture given in cm3 cm-3; SoilTempXX is the soil temperature given in °C; RelHumXX is the relative humidity given as dimensionless number; AirTempXX is the air temperature in °C; AirPressXX is the barometric air pressure given in kPa; SolarRadXX is the solar radiation given in W m-2; WindAvgXX is the average wind speed given in m s-1; WindMaxXX is the maximum wind speed given in m s-1; WindDirXX is the direction of the wind given in °; PrecXX is the precipitation given in mm; DistXX is the distance to the zero line (edge), positive values are in the arable land, negative values are in the forest, zero is the edge. For more details see "Microclimate". The data was edited according to "Data converting". Timezone: Central European Time (CET).
Supplementary material 1 from: Schmidt M, Lischeid G, Nendel C (2018) Data on and methodology for measurements of microclimate and matter dynamics in transition zones between forest and adjacent arable land. One Ecosystem 3: e24295. https://doi.org/10.3897/oneeco.3.e24295
Measured values are indicated in the header by the variable (e.g. "SoilMoist") followed by the distance to the zero line (e.g. 30, indicated by XX in the description below). Date.Time is given as YYYY-MM-DD HH:MM:SS; SoilMoistXX is the soil moisture given in cm3 cm-3; SoilTempXX is the soil temperature given in °C; RelHumXX is the relative humidity given as dimensionless number; AirTempXX is the air temperature in °C; AirPressXX is the barometric air pressure given in kPa; SolarRadXX is the solar radiation given in W m-2; WindAvgXX is the average wind speed given in m s-1; WindMaxXX is the maximum wind speed given in m s-1; WindDirXX is the direction of the wind given in °; PrecXX is the precipitation given in mm; DistXX is the distance to the zero line (edge), positive values are in the arable land, negative values are in the forest, zero is the edge. For more details see "Microclimate". The data was edited according to "Data converting". Timezone: Central European Time (CET).
Supplementary material 1 from: Underwood E, Taylor K, Tucker G (2018) The use of biodiversity data in spatial planning and impact assessment in Europe. Research Ideas and Outcomes 4: e28045. https://doi.org/10.3897/rio.4.e28045
Biodiversity data sources at the EU level comprise the biodiversity and landuse-related EU reporting and monitoring programmes, and global or regional data portals which include data from European countries. Also gives an overview of spatial planning and data sources for biodiversity impact assessment in a selection of EU Member States: UK, Bulgaria, Netherlands, Germany, Sweden, Denmark and the Baltic Sea.
Supplementary data to the manuscript "Morphology and metabarcoding! A test with stream diatoms from Mexico highlights the complementarity of methods", submitted to Freshwater Science by D. Mora, N. Abarca, S. Proft, J. Grau, N. Enke, J. Carmona, O. Skibbe, R. Jahn and J. Zimmermann.
<p>Demultiplexed fastq files for 18 samples, accompanied by a table including sample numbers in the manuscript and sample numbers in the fastq files.</p>
Amine Supplementary data
<p>Supplementary data</p> <p>1.1 Region of interest for human fetal cardiomyocyte at 12 PCW</p> <p>1.2 Region of interest for Pluriomics HiPSC-CMs </p>
Supplementary Data: Heat transport in pristine and polycrystalline single-layer hexagonal boron nitride
<p>This is part of the supplementary material for the manuscript ``Heat transport in pristine and polycrystalline single-layer hexagonal boron nitride'' by Haikuan Dong, Petri Hirvonen, Zheyong Fan, and Tapio Ala-Nissila. Phys. Chem. Chem. Phys. <a href="http://dx.doi.org/10.1039/C8CP05159C">http://dx.doi.org/10.1039/C8CP05159C</a> [https://arxiv.org/abs/1806.07936]</p> <p>There are 6*8=48 files, each corresponding to a flat polycrystalline h-BN sample before molecular dynamics relaxation.</p> <p>In each file, the first row gives the lengths Lx and Ly (Lx=Ly) in the x and y directions, which will be used to set up the box in molecular dynamics simulations.</p> <p>Starting from the second row, the first column gives the atom types (0 for B and 1 for N), the second column gives the x coordinates and the third column gives the y coordinates.</p> <p>The number of atoms equals the number of rows in the file minus 1.</p> <p>The files are named as poly-a-b.xy, where "a" roughly corresponds to the linear size Lx and "b" labels the 8 samples for each size.</p> <p>The grain size d and the linear size Lx are related by d=Lx/4, so the 6 grain sizes are 10, 12.5, 17.5, 25, 37.5, and 50 nm.</p> <p> </p>
Supplementary material 4 from: Huber BA, Eberle J, Dimitrov D (2018) The phylogeny of pholcid spiders: a critical evaluation of relationships suggested by molecular data (Araneae, Pholcidae). ZooKeys 789: 51-101. https://doi.org/10.3897/zookeys.789.22781
Figure S4. Maximum-likelihood tree (RAxML) of a reduced set of taxa (excluding taxa for which less than four genes were available) : Explanation note: In the text we refer to this tree as '4+ genes tree'. Support values as in Figure S1.
Supplementary material 3 from: Huber BA, Eberle J, Dimitrov D (2018) The phylogeny of pholcid spiders: a critical evaluation of relationships suggested by molecular data (Araneae, Pholcidae). ZooKeys 789: 51-101. https://doi.org/10.3897/zookeys.789.22781
Figure S3. Maximum-likelihood tree (RAxML) of a reduced set of taxa (excluding rogue taxa with RogueNaRok) : Explanation note: In the text we refer to this tree as 'RogueNaRok tree'. Support values: RBS.
Supplementary material 2 from: Huber BA, Eberle J, Dimitrov D (2018) The phylogeny of pholcid spiders: a critical evaluation of relationships suggested by molecular data (Araneae, Pholcidae). ZooKeys 789: 51-101. https://doi.org/10.3897/zookeys.789.22781
Figure S2. Maximum-likelihood tree of the complete set of taxa inferred with RAxML : Explanation note: Support values as in Figure S1.
Supplementary material 1 from: Huber BA, Eberle J, Dimitrov D (2018) The phylogeny of pholcid spiders: a critical evaluation of relationships suggested by molecular data (Araneae, Pholcidae). ZooKeys 789: 51-101. https://doi.org/10.3897/zookeys.789.22781
Figure S1. Maximum-likelihood tree of the complete set of taxa inferred with IQ-TREE : Explanation note: This tree is identical to the one shown in Figs 2–12 except that it includes all outgroups and all support values are shown (in the sequence SBS / RBS / SH-like aLRT).
Supplementary Data Boot et al.
<p><strong>Supplementary Data to: <em>Mutational signature analysis of Asian OSCCs reveals novel mutational signature with exceptional sequence context specificity</em> by Boot <em>et al.</em></strong></p> <p><strong>Background</strong></p> <p>Study of mutational signatures in cancers can reveal the mutagenic processes that cells were exposed to prior and during tumourigenesis. Although recent work has identified 65 distinct single nucleotide substitution signatures, we expect that as-yet-undiscovered mutational processes will be able to shed further light on mutagenesis leading to carcinogenesis.</p> <p><strong>Methods</strong></p> <p>We analyzed the mutational spectra of 36 Asian oral squamous cell carcinomas.</p> <p><strong>Results</strong></p> <p>The mutational spectra of most of the carcinomas could be explained by known mutational signatures, but one sample showed a novel mutational signature. Whole-genome sequencing revealed that this mutational signature was characterized by a preponderance of thymine mutations, strong transcriptional strand bias, and a striking enrichment for adenines in the 4 base pairs 5’ of mutation sites. The enrichment was strongest 3 base pairs 5' of mutated thymines, where 93.5% of bases were adenines. We also observed deletions of single thymines with similar 5’ enrichment for adenines both inside and outside of thymine repeats. Examination of publicly available whole-genome and whole-exome sequencing data of 23,829 tumours revealed this signature in 23 tumours from sites including the bile-duct, bladder, pancreas and rectum.</p> <p><strong>Conclusions</strong></p> <p>Although the aetiology of this mutational signature remains unknown, the transcriptional strand bias suggests adduct formation on adenines. We speculate that the signature may have been caused by duocarmycins. These are naturally occurring large DNA-crosslinking molecules produced by some <em>Streptomyces</em> bacteria, and which were also used in the past in clinical trials. We call this novel mutational signature SBS_A<sup>n</sup>T.</p>
Supplementary data for "Computational Investigation of RO2 + HO2 and RO2 + RO2 Reactions of Monoterpene Derived First-Generation Peroxy Radicals Leading to Radical Recycling", revised version submitted to J. Phys. Chem. A
<p>log files (Gaussian 09) and out files (Orca 4.0)</p> <p>(Note: Files_final.zip contains all the same log and out files as Files.zip, but also few additional structures added during the revision process, namely two additional RO2 from ocimene ozonolysis, and one additional transition state for a RO2 + HO2 reaction. Please ignore the file Files.zip.)</p>
Supplementary material 1 from: Van Tuyl S, Whitmire A (2018) Investigation of Non-Academic Data Management Practices to Inform Academic Research Data Management. Research Ideas and Outcomes 4: e30829. https://doi.org/10.3897/rio.4.e30829
Interview protocol used for the project, "Investigation of Non-Academic Data Management Practices to Inform Academic Research Data Management"
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.