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Supplementary material 5 from: Augustinus BA, Lommen STE, Fogliatto S, Vidotto F, Smith T, Horvath D, Bonini M, Gentili RF, Citterio S, Müller-Schärer H, Schaffner U (2020) In-season leaf damage by a biocontrol agent explains reproductive output of an invasive plant species. NeoBiota 55: 117-146. https://doi.org/10.3897/neobiota.55.46874
Figure S2
Supplementary material 2 from: Augustinus BA, Lommen STE, Fogliatto S, Vidotto F, Smith T, Horvath D, Bonini M, Gentili RF, Citterio S, Müller-Schärer H, Schaffner U (2020) In-season leaf damage by a biocontrol agent explains reproductive output of an invasive plant species. NeoBiota 55: 117-146. https://doi.org/10.3897/neobiota.55.46874
Census dates
Supplementary material 1 from: Augustinus BA, Lommen STE, Fogliatto S, Vidotto F, Smith T, Horvath D, Bonini M, Gentili RF, Citterio S, Müller-Schärer H, Schaffner U (2020) In-season leaf damage by a biocontrol agent explains reproductive output of an invasive plant species. NeoBiota 55: 117-146. https://doi.org/10.3897/neobiota.55.46874
Study sites
Supplementary material 6 from: Augustinus BA, Lommen STE, Fogliatto S, Vidotto F, Smith T, Horvath D, Bonini M, Gentili RF, Citterio S, Müller-Schärer H, Schaffner U (2020) In-season leaf damage by a biocontrol agent explains reproductive output of an invasive plant species. NeoBiota 55: 117-146. https://doi.org/10.3897/neobiota.55.46874
Successful raceme formation
Questionário - Conhecimento em Oncologia de Agentes Comunitários da Saúde
<p>Questionário idealizado pelos autores, utilizado para avaliar o conhecimento de Agentes Comunitários de Saúde (ACS) quanto a temática Oncologia na Atenção Básica</p>
Intermittent Information-Driven Multi-Agent Area-Restricted Search
<p>An avi movie demonstration of a decentralised autonomous search by a swarm of drones. </p>
Anti-c-myc cholesterol based lipoplexes as onco-nanotherapeutic agents in vitro
<p>Underlying and extended data for manuscript in F1000Research entitledAnti-c-myc cholesterol based lipoplexes as onco-nanotherapeutic agents in vitro</p>
Data from: Lp-PLA2 and dual antiplatelet agents in intracranial arterial stenosis
Objective: To evaluate the interaction effect of lipoprotein-associated phospholipase A2 (Lp-PLA2) activity on the efficacy and safety of dual/single antiplatelet therapy in patients with and without intracranial arterial stenosis (ICAS) by the Clopidogrel in High-Risk Patients with Acute Non-disabling Cerebrovascular Events (CHANCE) trial. Methods: Subjects with both MR imaging analysis and Lp-PLA2 testing results were included in the current subanalysis. The interaction of Lp-PLA2 activity with the effects of dual and single antiplatelet therapy were analyzed through cox proportional hazards regressions model. Results: Among the 797 patients, the mean age was 63.1±10.8 years, 518 (65%) were men, 356 (44.7%) patients had ICAS and 441 (55.3%) did not. There are significantly more patients with elevated Lp-PLA2 activity in the ICAS group than that in the non-ICAS group (43.8% versus 35.4%, p=0.02). There was significant interaction between Lp-PLA2 activity levels and the two antiplatelet therapy for prevention of stroke recurrences and combined vascular events even after adjustment for confounding factors exclusively for patients with ICAS (p=0.016, 0.016, respectively), but not for those without (p=0.289, 0.597, respectively). Compared with aspirin alone, dual antiplatelet therapy significantly reduced the risk of stroke recurrences and combined vascular events (adjusted hazard ratio=0.33 [0.12-0.88], p=0.026; 0.33 [0.12-0.88], p=0.026, respectively) for patients with both ICAS and non-elevated Lp-PLA2 activity. Conclusions: Presence of both ICAS and non-elevated Lp-PLA2 activity may predict better response to dual antiplatelet therapy in prevention of recurrent strokes and combined vascular events for patients with minor stroke or high-risk TIA.
Educação em saúde sobre câncer de pele para agentes comunitários de saúde de unidades de saúde da família em Belém-PA
<p>The database is a result of a Extension Project named "Health education about skin cancer for community health agents in family health units in Belém-PA", what happened in 2018, with the endorsement of Federal University of Pará and the Ethics Comittee under nption number 2.516.981. </p>
Gene validation and remodelling using proteogenomics of Phytophthora cinnamomi, the causal agent of Dieback
<p>This spectral data is in support for the manuscript 'Gene validation and remodelling using proteogenomics of Phytophthora cinnamomi, the causal agent of Dieback'. This data was used to detect errors in the draft genome and curate previously undescribed genes in the <em>Phytophthora cinnamomi</em> genome. </p>
Figure 8 from: Bulbul MZH, Chowdhury TS, Misbah MMH, Ferdous J, Dey S, Hasan I, Fujii Y, Ozeki Y, Kawsar SMA (2021) Synthesis of new series of pyrimidine nucleoside derivatives bearing the acyl moieties as potential antimicrobial agents. Pharmacia 68(1): 23-34. https://doi.org/10.3897/pharmacia.68.e56543
Figure 8 Structures of compounds 7 (octanoyl derivative), 9 (myristoyl derivative), and 14 (dichloroacetyl derivative).
Scheme 1 from: Bulbul MZH, Chowdhury TS, Misbah MMH, Ferdous J, Dey S, Hasan I, Fujii Y, Ozeki Y, Kawsar SMA (2021) Synthesis of new series of pyrimidine nucleoside derivatives bearing the acyl moieties as potential antimicrobial agents. Pharmacia 68(1): 23-34. https://doi.org/10.3897/pharmacia.68.e56543
Scheme 1 Reagents and conditions: (a) dry Py, (C6H5)3COCl, –5 °C, 6 h, (70%; Rf = 0.52); (b) dry Py, various acyl halides (3–14), 0 °C to rt, DMAP, 6 h.
Figure 5 from: Bulbul MZH, Chowdhury TS, Misbah MMH, Ferdous J, Dey S, Hasan I, Fujii Y, Ozeki Y, Kawsar SMA (2021) Synthesis of new series of pyrimidine nucleoside derivatives bearing the acyl moieties as potential antimicrobial agents. Pharmacia 68(1): 23-34. https://doi.org/10.3897/pharmacia.68.e56543
Figure 5 Percentage zone of mycelial growth inhibition for compounds 3 and 11 against A. niger (A and B, respectively). DMSO represents the negative control, whereas nystatin is the positive control.
Figure 2 from: Bulbul MZH, Chowdhury TS, Misbah MMH, Ferdous J, Dey S, Hasan I, Fujii Y, Ozeki Y, Kawsar SMA (2021) Synthesis of new series of pyrimidine nucleoside derivatives bearing the acyl moieties as potential antimicrobial agents. Pharmacia 68(1): 23-34. https://doi.org/10.3897/pharmacia.68.e56543
Figure 2 Percentage of inhibition observed for A) B. subtilis by compounds 7, 9, and 8; B) E. coli by compounds 2, 4, and 9; C) S. abony by compounds 7, 9, and 14; and D) S. aureus by compounds 7, 9, and 14. DMSO was the negative control, whereas azithromycin represented the positive control.
Figure 7 from: Bulbul MZH, Chowdhury TS, Misbah MMH, Ferdous J, Dey S, Hasan I, Fujii Y, Ozeki Y, Kawsar SMA (2021) Synthesis of new series of pyrimidine nucleoside derivatives bearing the acyl moieties as potential antimicrobial agents. Pharmacia 68(1): 23-34. https://doi.org/10.3897/pharmacia.68.e56543
Figure 7 Percentage growth inhibition observed for various concentrations of compound 9. Right figure 96-well flat-bottom experiment.
Data from: Modelling social care provision in an agent-based framework with kinship networks
Current demographic trends in the UK include a fast-growing elderly population and dropping birth rates, and demand for social care amongst the aged is rising. The UK depends on informal social care -- family members or friends providing care -- for some 50% of care provision. However, lower birth rates and a graying population mean that care availability is becoming a significant problem, causing concern amongst policy-makers that substantial public investment in formal care will be required in decades to come. In this paper we present an agent-based simulation of care provision in the UK, in which individual agents can decide to provide informal care, or pay for private care, for their loved ones. Agents base these decisions on factors including their own health, employment status, financial resources, relationship to the individual in need, and geographical location. Results demonstrate that the model can produce similar patterns of care need and availability as is observed in the real world, despite the model containing minimal empirical data. We propose that our model better captures the complexities of social care provision than other methods, due to the socioeconomic details present and the use of kinship networks to distribute care amongst family members.
Data from: New MRI contrast agents based on silicon nanotubes loaded with superparamagnetic iron oxide nanoparticles
This article describes the preparation and fundamental properties of a new possible material as a MRI contrast agent based on the incorporation of preformed iron oxide nanocrystals into hollow silicon nanotubes. Specifically, superparamagnetic iron oxide nanoparticles Fe3O4 of two different average sizes (5 nm and 8 nm) were loaded into silicon nanotubes of two different shell thicknesses (40 nm and 70 nm). To achieve proper aqueous solubility, the nanotubes were functionalized with an outer polyethylene glycol (PEG)-diacid (600) moiety via an aminopropyl linkage. Relaxometry parameters r1 and r2 were measured, with the corresponding r2/r1 ratios in PBS confirming the expected negative contrast agent behaviour for these materials. For a given nanocrystal size, the observed r2 values are found to be inversely proportional to nanotube wall thickness, thereby demonstrating the role of nanostructured silicon template on associated relaxometry properties.
Data from: Genomic changes in the biological control agent Cryptolaemus montrouzieri associated with introduction
Biological control is the main purpose of intentionally introducing non-native invertebrate species. The evolutionary changes that occur in the populations of the introduced biological control agents may determine the agent's efficiency and the environmental safety. Here, to explore the pattern and extent of potential genomic changes in the worldwide introduced predatory ladybird beetle Cryptolaemus montrouzieri, we used a reduced-representation sequencing method to analyze the genome-wide differentiation of the samples from two native and five introduced locations. Our analyses based on a total of 53,032 single nucleotide polymorphism loci showed that beetles from the introduced locations in Asia and Europe exhibited significant reductions in genetic diversity and high differentiation compared with the samples from the native Australian range. Each introduced population belonged to a unique genetic cluster, while the beetles from two native locations were much more similar. These genomic patterns were also detected when the dataset was pruned for genomic outlier loci (52,318 SNPs remaining), suggesting that random genetic drift was the main force shaping the genetic diversity and population structure of this biological control agent. Our results provide a genome-wide characterization of polymorphisms in a biological control agent and reveal genomic differences that were influenced by the introduction history. These differences might complicate assessments of the efficiency of biological control and the invasion potential of this species but also indicate the feasibility of selective breeding.
Data from: Identification and evaluation of novel acetolactate synthase inhibitors as antifungal agents
High-throughput phenotypic screening against yeast Saccharomyces cerevisiae revealed a series of triazolo-pyrimidine-sulfonamide compounds with broad-spectrum antifungal activity, no significant cytotoxicity, and low protein binding. To elucidate the target of this series we have applied a chemogenomic profiling approach using the S. cerevisiae deletion collection. All compounds of the series yielded highly similar profiles that suggested acetolactate synthase (Ilv2p, catalyzes the first common step in branched chain amino acid biosynthesis) as a possible target. High correlation to profiles of known Ilv2p inhibitors like chlorimuron-ethyl provided further evidence for a similar mechanism of action. Genome-wide mutagenesis in S. cerevisiae identified 13 resistant clones with 3 different mutations in the catalytic subunit of acetolactate synthase that also conferred cross-resistance to established Ilv2p inhibitors. Mapping the mutations into the published Ilv2p crystal structure outlined the chlorimuron-ethyl binding cavity and it was possible to dock the triazolo-pyrimidine-sulfonamide compound into this pocket in silico. However, fungal growth inhibition could be bypassed through supplementation with exogenous branched chain amino acids, or by the addition of serum to the medium in all of the fungal organisms tested except for Aspergillus fumigatus. Thus, these data support the identification of triazolo-pyrimidine-sulfonamide as inhibitors of acetolactate synthase but suggest that targeting may be compromised due to the possibility of nutrient bypass in vivo.
Data from: Modeling the internet of things, self-organizing and other complex adaptive communication networks: a cognitive agent-based computing approach
Background: Computer Networks have a tendency to grow at an unprecedented scale. Modern networks involve not only computers but also a wide variety of other interconnected devices ranging from mobile phones to other household items fitted with sensors. This vision of the "Internet of Things" (IoT) implies an inherent difficulty in modeling problems. Purpose: It is practically impossible to implement and test all scenarios for large-scale and complex adaptive communication networks as part of Complex Adaptive Communication Networks and Environments (CACOONS). The goal of this study is to explore the use of Agent-based Modeling as part of the Cognitive Agent-based Computing (CABC) framework to model a Complex communication network problem. Method: We use Exploratory Agent-based Modeling (EABM), as part of the CABC framework, to develop an autonomous multi-agent architecture for managing carbon footprint in a corporate network. To evaluate the application of complexity in practical scenarios, we have also introduced a company-defined computer usage policy. Results: The conducted experiments demonstrated two important results: Primarily CABC-based modeling approach such as using Agent-based Modeling can be an effective approach to modeling complex problems in the domain of IoT. Secondly, the specific problem of managing the Carbon footprint can be solved using a multiagent system approach.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.