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Figure 7 from: Piponski M, Balkanov T, Logoyda L (2021) Development and validation of a fast and simple HPLC method for the simultaneous determination of bisoprolol and enalapril in dosage form. Pharmacia 68(1): 69-77. https://doi.org/10.3897/pharmacia.68.e50919

Figure 7 Linearity illustrating chromatograms obtained using final established, optimized and validated chromatographic method, with 55% methanol. First peak is bisoprolol and second enalapril Dionex Ultimate 3000 UHPLC system.

Figure 6 from: Piponski M, Balkanov T, Logoyda L (2021) Development and validation of a fast and simple HPLC method for the simultaneous determination of bisoprolol and enalapril in dosage form. Pharmacia 68(1): 69-77. https://doi.org/10.3897/pharmacia.68.e50919

Figure 6 Chromatograms chracteristics obtained using final established optimized validated chromatographic method (upper run), compared with more reteaining with 10% less methanol (lower run), with their system suitabilitiy parameters,worked on Dionex Ultimate 3000 UHPLC system.

Figure 5 from: Piponski M, Balkanov T, Logoyda L (2021) Development and validation of a fast and simple HPLC method for the simultaneous determination of bisoprolol and enalapril in dosage form. Pharmacia 68(1): 69-77. https://doi.org/10.3897/pharmacia.68.e50919

Figure 5 Chromatogram obtained using Shimadzu Nexera XR UPLC system and mobile phase 50% metanol and 40% of 0.07% (V/V) perchloric acid, column Zorbax Rx C8 (4.6 mm i.d. × 250 mm, 5 μm), with 3-D UV contour diagram extracted ,analytes UV spectra and peak purity. First peak at about 6.1min is bisoprolol and peak at about 7.1min is enalapril.

Figure 3 from: Piponski M, Balkanov T, Logoyda L (2021) Development and validation of a fast and simple HPLC method for the simultaneous determination of bisoprolol and enalapril in dosage form. Pharmacia 68(1): 69-77. https://doi.org/10.3897/pharmacia.68.e50919

Figure 3 Elution profiles obtained for test samples prepared of bisoprolol+ enalapril tablets (10 + 10) mg using three different mobile phases: a) 55% metanol and 45% of 0.07% (V/V) perchloric acid; b) 40% metanol and 10% acetonitrile and 50% of 0.07% (V/V) perchloric acid; and c) 50% metanol and 50% of 0.07% (V/V) perchloric acid. First peak is bisoprolol and second enalapril. Chromatographic conditions: Shimadzu Nexera XR UPLC system, C-8 column Zorbax Rx (4.6 mm i.d. X 250 mm, 5 μm), flow rate 1.0 mL/min, column temperature 42 °C, injection volume 10 μL.

Figure 4 from: Piponski M, Balkanov T, Logoyda L (2021) Development and validation of a fast and simple HPLC method for the simultaneous determination of bisoprolol and enalapril in dosage form. Pharmacia 68(1): 69-77. https://doi.org/10.3897/pharmacia.68.e50919

Figure 4 Chromatogram obtained using Shimadzu Nexera XR UPLC system and mobile phase 55% metanol and 45% of 0.07% (V/V) perchloric acid, column Zorbax Rx C8 (4.6 mm i.d. × 250 mm, 5 μm), with 3-D UV contour diagram extracted, analytes UV spectra and peak purity. First peak at about 4.7min is bisoprolol and peak at about 5.2min is enalapril.

Data from: Digital photography provides a fast, reliable and non-invasive method to estimate anthocyanin pigment concentration in reproductive and vegetative plant tissues

1. Anthocyanin pigments have become a model trait for evolutionary ecology since they often provide adaptive benefits for plants. Anthocyanins have been traditionally quantified biochemically, or more recently using spectral reflectance. However, both methods require destructive sampling and can be labour intensive and challenging with small samples. Recent advances in digital photography and image processing make it the method of choice for measuring colour in the wild. Here, we use digital images as a quick, non-invasive method to estimate relative anthocyanin concentration among plants exhibiting colour variation. 2. By using a consumer-level digital camera and a free image processing toolbox, we extracted RGB values from digital images to generate colour indices. We tested petals, stems, pedicels and calyces of six species, which contain different types of anthocyanin pigments and exhibit different pigmentation patterns. Colour indices were assessed by their correlation to biochemically determined anthocyanin concentration. For comparison, we also calculated colour indices from spectral reflectance and tested the correlation with anthocyanin concentration. 3. Indices perform differently depending on the nature of the colour variation. For both digital images and spectral reflectance, the most accurate estimates of anthocyanin concentration emerge from anthocyanin content-chroma ratio (ACCR), anthocyanin-chroma basic (ACCB) and strength of green (S green) indices. Some colour indices derived from digital images and spectral reflectance strongly correlate with biochemically determined anthocyanin concentration, but the estimates from digital images performed better than spectral reflectance in terms of 2 and normalized root-mean-square error. This was particularly noticeable in a species with striped petals, but in the case of striped calyces both methods showed a comparable relationship with anthocyanin concentration. 4. Using digital images brings new opportunities to accurately quantify the anthocyanin concentration in both floral and vegetative tissues. This method is efficient, completely non-invasive, applicable to both uniform and patterned colour, and works with samples of any size.

Data from: Foraging and fasting can influence contaminant concentrations in animals: an example with mercury contamination in a free-ranging marine mammal

Large fluctuations in animal body mass in relation to life-history events can influence contaminant concentrations and toxicological risk. We quantified mercury concentrations in adult northern elephant seals (Mirounga angustirostris) before and after lengthy at sea foraging trips (n = 89) or fasting periods on land (n = 27), and showed that mercury concentrations in blood and muscle changed in response to these events. The highest blood mercury concentrations were observed after the breeding fast, whereas the highest muscle mercury concentrations were observed when seals returned to land to moult. Mean female blood mercury concentrations decreased by 30% across each of the two annual foraging trips, demonstrating a foraging-associated dilution of mercury concentrations as seals gained mass. Blood mercury concentrations increased by 103% and 24% across the breeding and moulting fasts, respectively, demonstrating a fasting-associated concentration of mercury as seals lost mass. In contrast to blood, mercury concentrations in female's muscle increased by 19% during the post-breeding foraging trip and did not change during the post-moulting foraging trip. While fasting, female muscle mercury concentrations increased 26% during breeding, but decreased 14% during moulting. Consequently, regardless of exposure, an animal's contaminant concentration can be markedly influenced by their annual life-history events.

Data from: Fast formation of a supramolecular ion gel/solvoplastic elastomer with excellent stretchability

This study describes a simple yet efficient approach for the preparation of an ionic gel that is also elastomeric in its solid state bulk form. A series of poly(2-(Diethylamino)ethyl methacrylate-co-Lauryl methacrylate) P(DMAEMA-co-LMA) copolymer were synthesized first by radical polymerization. Quaternization of the PDMAEMA component in THF enables the formation of supramolecular network, gave rise to an ion gel. An elastomer with an elongation at break of over 600 % was obtained from the gel. The elastomer, connected by supramolecular ionic crosslinks, is solvoplastic in certain solvent. The simple yet efficient approach of the formation of ion-gel and the dried elastomer allows fast preparation of both gel-like and solid-state elastic materials for various applications where recyclability are required.

opencc-zeroDec 2011View details →

Data from: CLIP test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis

An important question arises when mapping quantitative trait loci (QTLs) for genetically correlated traits: is the correlation due to pleiotropy (a single QTL affecting more than one trait) and/or close linkage (different QTLs that are physically close to each other and influence the traits)? In this article, we propose the Close Linkage versus Pleiotropism (CLIP) test, a fast, simple and powerful method to distinguish between these two situations. The CLIP test is based on the comparison of the square of the observed correlation between a combination of apparent effects at the marker level to the minimal value it can take under the pleiotropic assumption. A simulation study was performed to estimate the power and alpha risk of the CLIP test and compare it to a test that evaluated whether the confidence intervals of the two QTLs overlapped or not (CI test). On average, the CLIP test showed a higher power (68%) to detect close-linked QTLs than the CI test (43%) and a same alpha risk (4%).

opencc-zeroDec 2013View details →

Data from: The Shortlist Method for fast computation of the Earth Mover's Distance and finding optimal solutions to transportation problems

Finding solutions to the classical transportation problem is of great importance, since this optimization problem arises in many engineering and computer science applications. Especially the Earth Mover's Distance is used in a plethora of applications ranging from content-based image retrieval, shape matching, fingerprint recognition, object tracking and phishing web page detection to computing color differences in linguistics and biology. Our starting point is the well-known revised simplex algorithm, which iteratively improves a feasible solution to optimality. The Shortlist Method that we propose substantially reduces the number of candidates inspected for improving the solution, while at the same time balancing the number of pivots required. Tests on simulated benchmarks demonstrate a considerable reduction in computation time for the new method as compared to the usual revised simplex algorithm implemented with state-of-the-art initialization and pivot strategies. As a consequence, the Shortlist Method facilitates the computation of large scale transportation problems in viable time. In addition we describe a novel method for finding an initial feasible solution which we coin Modified Russell's Method.

Data from: Data for evaluation of fast kurtosis imaging, b-value optimization and exploration of diffusion MRI contrast

Here we describe and provide diffusion magnetic resonance imaging (dMRI) data that was acquired in neural tissue and a physical phantom. Data acquired in biological tissue includes: fixed rat brain (acquired at 9.4T) and spinal cord (acquired at 16.4T) and in normal human brain (acquired at 3T). This data was recently used for evaluation of diffusion kurtosis imaging (DKI) contrasts and for comparison to diffusion tensor imaging (DTI) parameter contrast. The data has also been used to optimize b-values for ex vivo and in vivo fast kurtosis imaging. The remaining data was obtained in a physical phantom with three orthogonal fiber orientations (fresh asparagus stems) for exploration of the kurtosis fractional anisotropy. However, the data may have broader interest and, collectively, may form the basis for image contrast exploration and simulations based on a wide range of dMRI analysis strategies.

Data from: Cross-frequency synchronization connects networks of fast and slow oscillations during visual working memory maintenance

Neuronal activity in sensory and fronto-parietal (FP) areas underlies the representation and attentional control, respectively, of sensory information maintained in visual working memory (VWM). Within these regions, beta/gamma phase-synchronization supports the integration of sensory functions, while synchronization in theta/alpha bands supports the regulation of attentional functions. A key challenge is to understand which mechanisms integrate neuronal processing across these distinct frequencies and thereby the sensory and attentional functions. We investigated whether such integration could be achieved by cross-frequency phase synchrony (CFS). Using concurrent magneto- and electroencephalography, we found that CFS was load-dependently enhanced between theta and alpha–gamma and between alpha and beta-gamma oscillations during VWM maintenance among visual, FP, and dorsal attention (DA) systems. CFS also connected the hubs of within-frequency-synchronized networks and its strength predicted individual VWM capacity. We propose that CFS integrates processing among synchronized neuronal networks from theta to gamma frequencies to link sensory and attentional functions.

Data from: Large and fast human pyramidal neurons associate with intelligence

It is generally assumed that human intelligence relies on efficient processing by neurons in our brain. Although gray matter thickness and activity of temporal and frontal cortical areas correlate with IQ scores, no direct evidence exists that links structural and physiological properties of neurons to human intelligence. Here, we find that high IQ scores and large temporal cortical thickness associate with larger, more complex dendrites of human pyramidal neurons. We show in silico that larger dendritic trees enable pyramidal neurons to track activity of synaptic inputs with higher temporal precision, due to fast action potential kinetics. Indeed, we find that human pyramidal neurons of individuals with higher IQ scores sustain fast action potential kinetics during repeated firing. These findings provide the first evidence that human intelligence is associated with neuronal complexity, action potential kinetics and efficient information transfer from input s to output within cortical neurons.

Data from: Decreased mitochondrial metabolic requirements in fasting animals carry an oxidative cost

1. Many animals experience periods of food shortage in their natural environment. It has been hypothesised that the metabolic responses of animals to naturally-occurring periods of food deprivation may have long-term negative impacts on their subsequent life-history. 2. In particular, reductions in energy requirements in response to fasting may help preserve limited resources but potentially come at a cost of increased oxidative stress. However, little is known about this trade-off since studies of energy metabolism are generally conducted separately from those of oxidative stress. 3. Using a novel approach that combines measurements of mitochondrial function with in vivo levels of hydrogen peroxide (H2O2) in brown trout (Salmo trutta), we show here that fasting induces energy savings in a highly metabolically active organ (the liver) but at the cost of a significant increase in H2O2, an important form of reactive oxygen species (ROS). 4. After a 2-week period of fasting, brown trout reduced their whole-liver mitochondrial respiratory capacities (state 3, state 4 and cytochrome c oxidase activity), mainly due to reductions in liver size (and hence the total mitochondrial content). This was compensated for at the level of the mitochondrion, with an increase in state 3 respiration combined with a decrease in state 4 respiration, suggesting a selective increase in the capacity to produce ATP without a concomitant increase in energy dissipated through proton leakage. However, the reduction in total hepatic metabolic capacity in fasted fish was associated with an almost two-fold increase in in vivo mitochondrial H2O2 levels (as measured by the MitoB probe). 5. The resulting increase in mitochondrial ROS, and hence potential risk of oxidative damage, provides mechanistic insight into the trade-off between the short-term energetic benefits of reducing metabolism in response to fasting and the potential long-term costs to subsequent life-history traits.

opencc-zeroDec 2018View details →

Data from: Reorientation and propulsion in fast-starting zebrafish larvae: an inverse dynamics analysis

Most fish species use fast starts to escape from predators. Zebrafish larvae perform effective fast starts immediately after hatching. They use a C-start, where the body curls into a C-shape, and then unfolds to accelerate. These escape responses need to fulfil a number of functional demands, under the constraints of the fluid environment and the larva's body shape. Primarily, the larvae need to generate sufficient escape speed in a wide range of possible directions, in a short-enough time. In this study, we examined how the larvae meet these demands. We filmed fast starts of zebrafish larvae with a unique five-camera setup with high spatiotemporal resolution. From these videos, we reconstructed the three-dimensional swimming motion with an automated method and from these data calculated resultant hydrodynamic forces and, for the first time, 3D torques. We show that zebrafish larvae reorient mostly in the first stage of the start by producing a strong yaw torque, often without using the pectoral fins. This reorientation is expressed as the body angle, a measure that represents the rotation of the complete body, rather than the commonly used head angle. The fish accelerates its centre of mass mostly in stage 2 by generating a considerable force peak while the fish "unfolds". The escape direction of the fish correlates strongly with the amount of body curvature in stage 1, while the escape speed correlates strongly with the duration of the start. This may allow the fish to independently control the direction and speed of the escape.

opencc-zeroDec 2014View details →

Data from: BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction

Next Generation Sequencing (NGS) is driving rapid advancement in biological understanding and RNA-sequencing (RNA-seq) has become an indispensable tool for biology and medicine. There is a growing need for access to these technologies although preparation of NGS libraries remains a bottleneck to wider adoption. Here we report a novel method for the production of strand specific RNA-seq libraries utilizing inherent properties of double-stranded cDNA to capture and incorporate a sequencing adapter. Breath Adapter Directional sequencing (BrAD-seq) reduces sample handling and requires far fewer enzymatic steps than most available methods to produce high quality strand-specific RNA-seq libraries. The method we present is optimized for 3-prime Digital Gene Expression (DGE) libraries and can easily extend to full transcript coverage shotgun (SHO) type strand-specific libraries and is modularized to accommodate a diversity of RNA and DNA input materials. BrAD-seq offers a highly streamlined and inexpensive option for RNA-seq libraries.

Data from: GIbPSs: a toolkit for fast and accurate analyses of genotyping-by-sequencing data without a reference genome

Genotyping-by-sequencing (GBS) and related methods are increasingly used for studies of non-model organisms from population genetic to phylogenetic scales. We present GIbPSs, a new genotyping toolkit for the analysis of data from various protocols such as RAD, double-digest RAD, GBS, and two-enzyme GBS without a reference genome. GIbPSs can handle paired-end GBS data and is able to assign reads from both strands of a restriction fragment to the same locus. GIbPSs is most suitable for population genetic and phylogeographic analyses. It avoids genotyping errors due to indel variation by identifying and discarding affected loci. GIbPSs creates a genotype database that offers rich functionality for data filtering and export in numerous formats. We performed comparative analyses of simulated and real GBS data with GIbPSs and another program, pyRAD. This program accounts for indel variation by aligning homologous sequences. GIbPSs performed better than pyRAD in several aspects. It required much less computation time and displayed higher genotyping accuracy. GIbPSs retained smaller numbers of loci overall in analyses of real GBS data. It nevertheless delivered more complete genotype matrices with greater locus overlap between individuals and greater numbers of loci sampled in all individuals.

opencc-zeroDec 2014View details →

Data from: aTRAM - automated Target Restricted Assembly Method: a fast method for assembling loci across divergent taxa from next-generation sequencing data

Background: Assembling genes from next-generation sequencing data is not only time consuming but computationally difficult, particularly for taxa without a closely related reference genome. Assembling even a draft genome using de novo approaches can take days, even on a powerful computer, and these assemblies typically require data from a variety of genomic libraries. Here we describe software that will alleviate these issues by rapidly assembling genes from distantly related taxa using a single library of paired-end reads: aTRAM, automated Target Restricted Assembly Method. The aTRAM pipeline uses a reference sequence, BLAST, and an iterative approach to target and locally assemble the genes of interest. Results: Our results demonstrate that aTRAM rapidly assembles genes across distantly related taxa. In comparative tests with a closely related taxon, aTRAM assembled the same sequence as reference-based and de novo approaches taking on average < 1 min per gene. As a test case with divergent sequences, we assembled >1,000 genes from six taxa ranging from 25 – 110 million years divergent from the reference taxon. The gene recovery was between 97 – 99% from each taxon. Conclusions: aTRAM can quickly assemble genes across distantly-related taxa, obviating the need for draft genome assembly of all taxa of interest. Because aTRAM uses a targeted approach, loci can be assembled in minutes depending on the size of the target. Our results suggest that this software will be useful in rapidly assembling genes for phylogenomic projects covering a wide taxonomic range, as well as other applications. The software is freely available: http://www.github.com/juliema/aTRAM

Data from: Three-dimensional simulation for fast forward flight of a calliope hummingbird

We present a computational study of flapping-wing aerodynamics of a calliope hummingbird (Selasphorus calliope) during fast forward flight. Three-dimensional wing kinematics were incorporated into the model by extracting time-dependent wing position from high-speed videos of the bird flying in a wind tunnel at 8.3 m s−1. The advance ratio, i.e. the ratio between flight speed and average wingtip speed, is around one. An immersed-boundary method was used to simulate flow around the wings and bird body. The result shows that both downstroke and upstroke in a wingbeat cycle produce significant thrust for the bird to overcome drag on the body, and such thrust production comes at price of negative lift induced during upstroke. This feature might be shared with bats, while being distinct from insects and other birds, including closely related swifts.

Data from: Committing to quantum resistance: a slow defence for Bitcoin against a fast quantum computing attack

Quantum computers are expected to have a dramatic impact on numerous fields, due to their anticipated ability to solve classes of mathematical problems much more efficiently than their classical counterparts. This particularly applies to domains involving integer factorisation and discrete logarithms, such as public key cryptography. In this paper we consider the threats a quantum-capable adversary could impose on Bitcoin, which currently uses the Elliptic Curve Digital Signature Algorithm (ECDSA) to sign transactions. We then propose a simple but slow commit--delay--reveal protocol, which allows users to securely move their funds from old (non-quantum-resistant) outputs to those adhering to a quantum-resistant digital signature scheme. The transition protocol functions even if ECDSA has already been compromised. While our scheme requires modifications to the Bitcoin protocol, these can be implemented as a soft fork.