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3,172 results for “public”
Datasets related to publication: Microbial Consortia for Effective Biocontrol of Root and Foliar Diseases in Tomato
<p>Datasets underlying the results presented in the Original Research Article "Microbial Consortia for Effective Biocontrol of Root and Foliar Diseases in Tomato", Frontiers in Plant Science, Volume 12, Article 756368, https://www.frontiersin.org/articles/10.3389/fpls.2021.756368/full, <a href="https://doi.org/10.3389/fpls.2021.756368">https://doi.org/10.3389/fpls.2021.756368</a></p> <p>This research has received funding from the European Union’s Horizon 2020 research and Innovation programme under grant agreement No 765290 (Name of the action: Microbe induced resistance to agricultural pests, Acronym: MiRA).</p>
Supplementary data to publication "Growth efficiency, intestinal biology, and nutrient utilization and requirements of black soldier fly (Hermetia illucens) larvae compared to monogastric livestock species: a review"
<p>The datasets provided in the excel file were used to generate Table 2 and Fig. 2 in the publication entitled "Growth efficiency, intestinal biology, and nutrient utilization and requirements of black soldier fly (Hermetia illucens) larvae compared to monogastric livestock species: a review" by Seyedalmoosavi et al., 2022 published in Journal of Animal Science and Biotechnology. https://doi.org/10.1186/s40104-022-00682-7</p>
Public Release of Dataset and Code for Accurate and intelligent determination of mechanical response of nodular piles in offshore ground
<p>This is the public release of this repository which contains code and data to accompany the paper: Chen, X.X., Zhan, C.S., Lu, S.L. (2021). Accurate and intelligent determination of mechanical response of nodular piles in offshore ground. PLoS ONE.</p> <p>This file includes the original data of axial force and shaft resistance of piles in 'dataset.xlsx' and 'data.txt'. The code in 'LSTM_model.m' requires software of Octave or Matlab.</p> <p> </p> <p> </p>
River microplastic field data locations associated with publication
<p>Field data locations associated with Piehl et al (2020) Can Water Constituents Be Used as Proxy to Map Microplastic Dispersal Within Transitional and Coastal Waters? doi: <a href="https://www.frontiersin.org/articles/10.3389/fenvs.2020.00092/full">10.3389/fenvs.2020.00092</a>. Full dataset table, including water quality measurements and sampled microplastic concentrations, can be found in the Supplemental Material of that publication. </p>
Dataset for publication: Test Bench and Frequency Response of a Magnetic Antenna used in GIS PD Measurements
<p>Data set belonging to the <a href="https://ieeexplore.ieee.org/xpl/conhome/9611374/proceeding">2021 IEEE Electrical Insulation Conference (EIC)</a> paper with DOI: <a href="https://doi.org/10.1109/EIC49891.2021.9612372">10.1109/EIC49891.2021.9612372</a></p> <p>The authors preprint is available from Zendodo with DOI: <a href="https://doi.org/10.5281/zenodo.5815710">10.5281/zenodo.5815710</a>. </p> <p>Mier Escurra, Christian; Mor, Armando Rodrigo</p> <p><em>Test Bench and Frequency Response of a Magnetic Antenna used in GIS PD Measurements</em></p>
Dataset for the publication "Photoelectron energy peaks shift against the radiation pressure in strong field ionization"
<p>The data used to create the figures in the publication "Photoelectron energy peaks shift against the radiation pressure in strong field ionization".</p>
Exposome Chemicals without MS data in the public domain
<p>List of high priority exposome chemicals that lack mass spectral data in public mass spectral repositories and the NIST MS 2020 database. Some of them are not amenable to mass spectrometry instruments. These compounds should be candidates for MS library expansion projects in exposome. </p>
Survey Data | Public Engagement with Science: A Survey for India Alliance Grantees |
<p>Lately, the Indian research ecosystem has seen an upward trend in scientists showing interest in communicating their science and engaging with non-scientific audiences; however, the number and variety of science communication or public engagement activities undertaken formally by scientists remains low in the country. There could be many contributing factors for this trend. To explore this further, the science funding public charity in India, DBT/Wellcome Trust India Alliance (India Alliance), in a first of its kind of study by a funding agency in India, surveyed its 243 research grantees in November 2020 requesting their views on public engagement with science in India through an online survey. The survey included both quantitative as well as open-ended questions to assess the understanding of, participation in, and attitude of India Alliance Fellows/Grantees towards public engagement with research, identify the enablers, challenges, and barriers to public engagement for India Alliance Fellows/Grantees, understand the specific needs (training/capacity-building, funding, etc.) and develop recommendations for India Alliance as well as for the larger scientific ecosystem in the country. The survey showed that India Alliance grantees are largely motivated to engage with the public about science or their research but lack professional recognition and incentives, training and structural support to undertake public engagement activities.</p> <p>A shareable survey was designed using Microsoft Forms. The survey employed a mixed methods strategy and included 24 closed-ended questions (multiple choice and Likert scale) and nine qualitative questions, similar to open-ended questions. The questions were modelled on a similar survey carried out by Wellcome in 2016 to gather views of researchers on public engagement in Asia and Africa.</p> <p>The survey was shared by email with 243 Indian researchers in receipt of India Alliance fellowships or grants, out of which 137 (male – 78; female – 59) responded to the survey. Of these, 90 respondents were basic science researchers, 22 were clinical researchers, and 25 were public health researchers. A majority, i.e. 81% of the respondents indicated working as an independent researcher for more than 4 years (time post-PhD). Furthermore, 58% of the respondents were based at research institutions, 18% at higher education institutions, and 17% at central, state and private universities; these organisations geographically represent around 31 cities of India (9 respondents chose to not reveal their host institution in the survey). Periodic reminders were sent by email to the fellows to complete the survey. Three fellows who received funding from India Alliance for their public engagement projects were contacted via email after the survey for their views (in 50-150 words) on the public engagement funding programme of India Alliance. They were informed that their input is intended to be included in a report of the survey results, and they can choose to either stay anonymous or be credited. The data was collected from 27 November 2020 until 28 April 2021.</p> <p>Following the end of the survey, the data automatically mapped on Microsoft Excel was cleaned for duplication and errors. Microsoft Excel tools were used to analyse and visualise the data.</p> <p>The study did not undergo a formal ethical clearance process as the primary objective of the study was to gather insights of grantees to inform India Alliance’s public engagement support mechanisms. At the start of the survey, the objectives of the survey were clearly stated and the respondents were informed that the anonymized data of the survey may be communicated in the future. Participation in the survey was entirely voluntary.</p>
Gold Nanoparticles Synthesized in the Presence of Peptides - UV-Vis Spectra, Fluorescence, USAXS, Electron Microscopy; pre-publication version
<p>Content Summary:</p> <ul> <li>Data from experiments in which gold nanoparticles were synthesized in the presence of peptides using a liquid-handling robot. Samples were analyzed using UV-Vis spectroscopy, fluorescence emission, USAXS, TEM, and SEM. </li> <li>Notebooks for loading and plotting data</li> <li>Code for synthesizing samples using an OT2 Opentrons liquid-handling robot.</li> </ul> <p>README:</p> <blockquote> <p><strong>/Data</strong></p> <p>Contains all UV-Vis, electron microscopy, fluorescence, and SAXS data for gold nanoparticles synthesized in the presence of peptides and HEPES.</p> <p><strong>/Data/2021_12_30_Prepared_UV_Vis_Data</strong></p> <p>The primary portion of the experimental dataset. UV-Vis spectroscopy data collected on a Biotek Epoch 2 microplate spectrophotometer 24 hours after samples were synthesized using a liquid handling robot (Opentrons OT2). The <strong>4x4x4_SI.csv </strong>file is the compilation of all sample information:</p> <ul> <li>Concentrations (M) of peptide, HAuCl4, and HEPES</li> <li>UID – unique ID based on date of synthesis, sample position, and peptide which was used to synthesize the sample.</li> <li>Peptide names: Z2: RMRMKMK; MZ2: myristoylated - RMRMKMK; MZ2R: myristoylated - KMKMRMR; PZ2: palmitoylated – RMRMKMK; Z2M6I: RMRMKIK; Z2M246I: RIRIKIK; AG3: AYSSGAPPMPPF.</li> </ul> <p>Each sample’s UID is a key to match with UV-Vis measurement result stored in the {<strong>UID}.txt </strong>files. Each of these files contains the wavelength, absorbance, and absorbance after subtraction of a water measurement.</p> <p><strong>/Data/ElectronMicroscopy</strong></p> <p>Scanning electron microscopy and transmission electron microscopy results of gold nanoparticles formed from the reduction of HAuCl4 in the presence or absence of different peptides.</p> <p>Fig A, B, C, D, E/F were prepared in the presence of Z2, Z2M6I, Z2M246I, no peptide, and MZ2R, respectively.</p> <p><strong>/Data/Fluorescence</strong></p> <p>Pyrene fluorescence data collected in the presence of different concentrations of lipidated peptides (MZ2, MZ2R, and PZ2) for estimation of the peptide critical micelle concentration.</p> <p><strong>/Data/SAXS</strong></p> <p>SAXS data of a high concentration of MZ2 which was fit using a cylindrical model form factor. The evaluated model is also shared in this directory.</p> <p><strong>/Data/USAXS</strong></p> <p>Similarly to the UV-Vis data directory, the <strong>USAXS_SI.csv</strong> file contains sample information for all of the USAXS measurements. The <strong>dsm_rg.csv</strong> file contains the output of AUTORG evaluated on the desmeared data after subtraction of a flat background at high-q. <strong>/DSM_Nexus, DSM_sub_AUTORG, </strong>and <strong>SMR_Nexus</strong> contain the desmeared, desmeared with background subtraction, and smeared versions of the USAXS data, respectively.</p> <p><strong>/Notebooks</strong></p> <p>Notebooks for plotting the shared data and estimating the CMC from the fluorescence data. See <strong>/Notebooks/environment.yml</strong> for packages necessary to execute the notebooks here and in <strong>/Synthesis_Protocol</strong>. Refer to <a href="https://github.com/SasView/sasmodels">https://github.com/SasView/sasmodels</a> for specific instructions on how to install the sasmodels module.</p> <p><strong>/Figures</strong></p> <p>Figures generated from <strong>/Notebooks</strong>.</p> <p><strong>/Synthesis_Protocol</strong></p> <p>Please read the instructions within <strong>/Synthesis_Procol/Example.ipynb</strong>. In short, this folder contains the code used to synthesize the samples in this dataset using an OT2 Opentrons liquid handling robot.</p> <p> </p> </blockquote>
Freshwater viral metagenome assembled genomes (vMAGs) used for vContact2 analysis in publication Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments
<p>This dataset contains all freshwater viruses that were mined from publicly available data in an effort to provide biogeographical context to viral communities identified from the Columbia River. These two files include data from:</p> <p>1) East River, CO (PRJNA579838)</p> <p>2) A previous study from the Columbia River, WA (PRJNA375338)</p> <p>3) Prairie Potholes, ND (PRJNA365086)</p> <p>4) Amazon River (PRJNA237344)</p> <p> </p> <p>Manuscript title Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments</p>
Open data for spatial public health research
<p><strong>Background</strong></p> <p>Preventive and health-promoting policies can guide (place and space-specific) factors influencing human health, such as the physical and social environment. Required is data that can lead to a more nuanced decision-making process and identify both, existing and future challenges. Along with the rise of new technologies, and thus the multiple opportunities to use and process data, new options have emerged to measure and monitor factors that affect health. Thus, in recent years, several gateways for open data (including governmental and geospatial data) became available. At present, an increasing number of research institutions as well as (state and private) companies and citizens' initiatives provide data. However, there is a lack of overviews covering the range of such offerings regarding health. In particular, for geographically differentiated analyses, there are challenges related to data availability at different spatial levels and the growing number of data providers.</p> <p><strong>Objectives</strong></p> <p>To provide an overview of open data resources available in the context of space and health to date. It also describes the technical and legal conditions for using open data</p> <p><strong>Results</strong></p> <p>An up-to-date summary of results including information on relevant data access and terms of use is provided along with a web visualization. All data is available for further use under an open license.</p>
Data Set of Public Procurement in México (2013-2020)
<p>This repository contains all data sets, manuals, and codes to reproduce the main results shown in the paper "Practices of public procurement and the risk of corrupt behavior before and after the government transition in México" (on revision in EPJ Data Science - Springer.) (arxive: <a href="https://arxiv.org/abs/2108.02653">arXiv:2108.02653</a>)</p>
Data publication for "First-principles derivation and properties of density-functional average-atom models"
<p>Data for the pre-print "First-principles derivation and properties of density-functional average-atom models", https://arxiv.org/abs/2103.09928.</p> <p>Each data folder is named according to the corresponding figure in the paper. For any questions, please contact the authors.</p>
Supporting trees and alignments for the publication: Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
<div class="page"> <div class="layoutArea"> <div class="column"> <p>Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are relatively understudied outside disease settings. Here, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth's RNA virus catalogues and their taxonomy, investigate their evolutionary origins, and assess their marine biogeography from pole to pole. Using new approaches to optimize discovery and classification, we identified RNA viruses that necessitate substantive revisions of taxonomy (doubling phyla and adding >50% new classes) and evolutionary understanding. "Species"-rank abundance determination revealed that viruses of new phyla<span> </span><em>"Taraviricota"</em><span>, </span>a missing link in early RNA virus evolution, and<span> </span><em>"Arctiviricota"</em><span> </span>are widespread and dominant in the oceans. These efforts provide foundational knowledge critical to integrating RNA viruses into ecological and epidemiological models.</p> </div> </div> </div>
Data supporting the publication "Non-Hermitian chiral phononics through optomechanically-induced squeezing"
<p>Data supporting the publication "Non-Hermitian chiral phononics through optomechanically-induced squeezing". Version 2, including Extended Data figures.</p>
Strateole-2 data set associated to the publication "A seismic network in the stratosphere"
<p>NetCDF files of the pressure and temperature data of TSEN sensors, and GPS coordinates, on board EUROS gondolas of Strateole-2 project (stratospheric balloons deployed during fall 2021).</p> <p>One file per gondola, associated to the 4 balloons detecting the Flores quake (2021/12/14 3:20:35.8 GMT) and to a single balloon detecting the Northern Peru quake (2021/11/28 10:52:25.8 GMT).</p> <p>These data cover one hour before and 2 hours after the quake. The rest of the Strateole-2 data will be released by the project. This SUbset is associated to the publication "A seismic network in the stratosphere.</p>
Data set for publication: Interfacial Deposition of Titanium Dioxide at the Polarized Liquid– Liquid Interface
<p>The attached files are the raw data used to write the manuscript (.txt; .csv; .jpg): Interfacial Deposition of Titanium Dioxide at the Polarized Liquid– Liquid Interface</p>
Dataset (II) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist
<p>MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. <a href="https://doi.org/10.1016/j.csbj.2022.06.020">https://doi.org/10.1016/j.csbj.2022.06.020</a></p> <p>Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files)</p> <p>dataset I: systems SRL+Co, C-100 and BAY-1797</p> <p>dataset I: each file contains all branched replicas and the main replica.</p> <p>dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b).</p> <p>dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches.</p> <p>dataset I: system SRL+Co ;each file contains one main replica</p> <p>dataset I: system BAY-1797; each file contains one main replica</p> <p>dataset II:system SRL ; each file contains one main replica.</p>
Dataset (I) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist
<p>MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. <a href="https://doi.org/10.1016/j.csbj.2022.06.020">https://doi.org/10.1016/j.csbj.2022.06.020</a></p> <p>Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files)</p> <p>dataset I: systems SRL+Co, C-100 and BAY-1797</p> <p>dataset I: each file contains all branched replicas and the main replica.</p> <p>dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b).</p> <p>dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches.</p> <p>dataset I: system SRL+Co ;each file contains one main replica</p> <p>dataset I: system BAY-1797; each file contains one main replica</p> <p>dataset II:system SRL ; each file contains one main replica.</p>
Data Graphs | Public Engagement with Science: A Survey for India Alliance Grantees
<p>Lately, the Indian research ecosystem has seen an upward trend in scientists showing interest in communicating their science and engaging with non-scientific audiences; however, the number and variety of science communication or public engagement activities undertaken formally by scientists remains low in the country. There could be many contributing factors for this trend. To explore this further, the science funding public charity in India, DBT/Wellcome Trust India Alliance (India Alliance), in a first of its kind of study by a funding agency in India, surveyed its 243 research grantees in November 2020 requesting their views on public engagement with science in India through an online survey. The survey included both quantitative as well as open-ended questions to assess the understanding of, participation in, and attitude of India Alliance Fellows/Grantees towards public engagement with research, identify the enablers, challenges, and barriers to public engagement for India Alliance Fellows/Grantees, understand the specific needs (training/capacity-building, funding, etc.) and develop recommendations for India Alliance as well as for the larger scientific ecosystem in the country. The survey showed that India Alliance grantees are largely motivated to engage with the public about science or their research but lack professional recognition and incentives, training and structural support to undertake public engagement activities.</p> <p>A shareable survey was designed using Microsoft Forms. The survey employed a mixed methods strategy and included 24 closed-ended questions (multiple choice and Likert scale) and nine qualitative questions, similar to open-ended questions. The questions were modelled on a similar survey carried out by Wellcome in 2016 to gather views of researchers on public engagement in Asia and Africa.</p> <p>The survey was shared by email with 243 Indian researchers in receipt of India Alliance fellowships or grants, out of which 137 (male – 78; female – 59) responded to the survey. Of these, 90 respondents were basic science researchers, 22 were clinical researchers, and 25 were public health researchers. A majority, i.e. 81% of the respondents indicated working as an independent researcher for more than 4 years (time post-PhD). Furthermore, 58% of the respondents were based at research institutions, 18% at higher education institutions, and 17% at central, state and private universities; these organisations geographically represent around 31 cities of India (9 respondents chose to not reveal their host institution in the survey). Periodic reminders were sent by email to the fellows to complete the survey. Three fellows who received funding from India Alliance for their public engagement projects were contacted via email after the survey for their views (in 50-150 words) on the public engagement funding programme of India Alliance. They were informed that their input is intended to be included in a report of the survey results, and they can choose to either stay anonymous or be credited. The data was collected from 27 November 2020 until 28 April 2021.</p> <p>Following the end of the survey, the data automatically mapped on Microsoft Excel was cleaned for duplication and errors. Microsoft Excel tools were used to analyse and visualise the data.</p> <p>The study did not undergo a formal ethical clearance process as the primary objective of the study was to gather insights of grantees to inform India Alliance’s public engagement support mechanisms. At the start of the survey, the objectives of the survey were clearly stated and the respondents were informed that the anonymized data of the survey may be communicated in the future. Participation in the survey was entirely voluntary.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.