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Fig. 3 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Enterobacteriales, Oceanospirillales and Xanthomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 2 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Aeromonadales, Alteromonadales and Chromatiales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, MD2F 12; 2, HMF2613; 3, HME9674; 4, IMCC12363; 5, HME9272; 6, IMCC12427; 7, 61DPR3; 8, HMF2735; 9, MIH20; 10, Duck L2; 11, WR25; 12, 142-3; 13, HME8565; 14, HMF2475; 15, HMF2842; 16, IMCC12288; 17, IMCC12372; 18, IMCC12398; 19, ET2115; 20, ET131; 21, BM06; 22, 145-5; 23, HMF2483; 24, HMF2783; 25, R1-18; 26, KM2-7; 27, SRYB1; 28, B2-2; 29, B11-1; 30, B11-2; 31, WS26; 32, RK 6Y-4-1; 33, N1-1.
Fig. 2 in A report on 14 unrecorded bacterial species isolated from the Nakdong River, South Korea
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study and their relatives in the phylums Firmicutes, Bacteroidetes and Actinobacteria. Bootstrap values (>70%) are shown at nodes. Bar, 0.05 substitutions per nucleotide position.
Fig. 3 in A report on 14 unrecorded bacterial species isolated from the Nakdong River, South Korea
Fig. 3. Transmission electron micrographs of cells of the strains isolated in this study. Strains: 1, 5SWB3-2; 2, 6SW1-49; 3, 19SA03-R-5; 4, 19MK03-0.1R-21; 5, 5SWB1-35; 6, 19SA03-N-12; 7, 19MK03-MR-19; 8, BK-49; 9, 19SA03-T-11; 10, SWB1-24; 11, 19MK03-0.1M-18; 12, 19SA03-R-9; 13, SWB3-6; 14, 19SA03-T-4.
Fig. 2 in A report of 37 unrecorded anaerobic bacterial species isolated from the Geum River in South Korea
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study. Bootstrap values (expressed as percentages of 1000 replications) of above 70% are shown at branch points. Filled circles and empty circles indicate nodes recovered by all three or two algorithms (neighbor-joining, maximum likelihood, and maximum parsimony), respectively. Halolamina sediminis halo-7T (CVUA01000001) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.
Fig. 1 in A report of 37 unrecorded anaerobic bacterial species isolated from the Geum River in South Korea
Fig. 1. Transmission electron micrographs of cells. Strains: 1, CBA7501; 2, CBA7502; 3, CBA7503; 4, CBA7505; 5, CBA7506; 6, CBA7507; 7, CBA7508; 8, CBA7510; 9, CBA7511; 10, CBA7512; 11, CBA7513; 12, CBA7514; 13, CBA7516; 14, CBA7517; 15, CBA7518; 16, CBA7519; 17, CBA7520; 18, CBA7521; 19, CBA7522; 20, CBA7523; 21, CBA7524; 22, CBA7526; 23, CBA7527; 24, CBA7528; 25, CBA7529; 26, CBA7530; 27, CBA7531; 28, CBA7532; 29, CBA7533; 30, CBA7534; 31, CBA7535; 32, CBA7536; 33, CBA7537; 34, CBA7538; 35, CBA7539; 36, CBA7540; 37, CBA7541.
Fig. 1 in A report on 14 unrecorded bacterial species isolated from the Nakdong River, South Korea
Fig. 1. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study and their relatives in the classes Alphaproteobacteria and Gammaproteobacteria. Bootstrap values (>70%) are shown at nodes. Bar, 0.05 substitutions per nucleotide position.
Fig. 5 in New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae)
Fig. 5. Phylogenetic tree based on the nifH gene partial sequences aligned 318 bp showing the genetic position of Microseira wollei of Korea along with other geographical populations. Numbers indicate bootstrap value (>50%) from 1,000 replicates maximum parsimony (MP), maximum likelihood (ML), neighbor-joining (NJ) analysis respectively. GenBank accession numbers are shown in parentheses (scale bar: 0.05 nucleotide substitutions per site).
Fig. 3 in New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae)
Fig. 3. Ultrastructures of Microseira wollei by transmission electron microscopy (TEM). A. Cross-section of filament surrounded by cell wall and thickened sheath. B. Cytoplasm filled with numerous thylakoids. C. Densely stacked thylakoids. D. Magnified thylakoids. cp (cytoplasm), cw (cell wall), sh (sheath), th (thylakoid).
Fig. 4 in New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae)
Fig. 4. Phylogenetic tree based on the 16S rRNA gene partial sequences aligned 1,267 bp showing the genetic position of Microseira wollei of Korea along with other geographical populations and related taxa with some taxonomic treatment of M. wollei. Numbers indicate bootstrap value (>50%) from 1,000 replicates maximum parsimony (MP), maximum likelihood (ML), neighbor-joining (NJ) analysis respectively. GenBank accession numbers are shown in parentheses (scale bar: 0.02 nucleotide substitutions per site).
Fig. 1 in New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae)
Fig. 1. Collection site and specimen information of Microseira wollei. A. Collection site near Gangjeong-Goryung weir in the Nakdong river. B. Natural form of Microseira wollei. C. Dried specimens deposited in KB, NIBRCY0000001021 (13 May 2020). D. NIBRCY0000001024 (16 Jun 2020).
Fig. 2 in New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae)
Fig. 2. Light micrographs of Microseira wollei collected in Gangjeong-Goryeong weir. A-D. Unbranched filament, showing thick sheath and trichomes. E, F. Discoid single cell released from filament.
Fig. 1 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 1. Transmission electron micrographs and scanning electron micrographs of cells of the species belonging to Firmicutes isolated in this study. Strains: 1. KYW2075; 2. MMS20-LR456; 3. MMS20-HD16; 4. MMS20-AI2-23T; 5. JHSTF-M24; 6. KYW2175; 7. CAU 1626; 8. BDTF-R2; 9. HMF5486; 10. HMG1274; 11. JHSTF-R20; 12. JHPTF-R3; 13. HMF5593; 14. MMS20-LR3019; 15. CAU 1627; 16. I2-44; 17. CAU 1608; 18. BM-39; 19. B5; 20. BM-27.
Fig. 3 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales, Caulobacterales and Rhodobacterales in the class Alphaproteobacteria. Bootstrap values are greater than 70% are shown in the neighbor-joining tree method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhodobacterales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, Mameliella phaeodactyli FIL 61 (TEM); 2, Yangia pacifica T4-2 (TEM); 3, Paracoccus aminovorans YH6C (TEM); 4, Brevundimonas bullata YHD2 (TEM); 5, Brevundimonas variabilis HMF4573 (TEM); 6, Brevundimonas staleyi HMF4667 (TEM); 7, Maricaulis maris HMF6043 (TEM); 8, Labrenzia alba SFD13 (SEM); 9, Ruegeria atlantica SF30 (SEM); 10, Loktanella rosea ZOD2-5 (SEM); 11, Phaeobacter inhibens EC2 (SEM); 12, Dinoroseobacter shibae GLB36 (SEM); 13, Labrenzia aggregata EC2D15 (SEM); 14, Tropicimonas sediminicola CAU 1140 (TEM); 15, Lutimaribacter saemankumensis CAU 1340 (TEM); 16, Litoreibacter albidus LPB0157 (SEM); 17, Sulfitobacter mediterraneus LPB0162 (TEM); 18, Thalassospira profundimaris IMCC25636 (TEM); 19, Hyphomonas jannaschiana IMCC25644 (TEM); 20, Roseivivax pacificus IMCC25645 (TEM); 21, Thalassospira tepidiphila IMCC25646 (TEM); 22, Paracoccus seriniphilus JHR-13 (TEM); 23, Paracoccus yeei CSC-1 (TEM).
Fig. 3 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Lactobacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Enterococcus faecalis ATCC 19433T (AB012212) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Bacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Thermoactinomyces vulgaris KCTC 9076T (AF138739) was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.
Fig. 2 in A report of 28 unrecorded bacterial species in Korea, isolated from freshwater and sediment of the Han River watershed in 2020
Fig. 2. Transmission electron micrographs of cells of the strains isolated in this study. Strains: 1, IMCC33701 (0.2 μm); 2, IMCC33702 (0.5 μm); 3, IMCC33703 (0.2 μm); 4, IMCC33707 (0.2 μm); 5, IMCC33708 (200 nm); 6, IMCC30636 (0.2 μm); 7, IMCC33714 (0.5 μm); 8, IMCC33715 (0.2 μm); 9, IMCC34758 (0.2 μm); 10, IMCC34759 (0.2 μm); 11, IMCC34760 (0.5 μm); 12, IMCC34761 (0.2 μm); 13, IMCC34762 (1.0 μm); 14, IMCC34764 (0.2 μm); 15, IMCC34765 (1.0 μm); 16, IMCC34766 (0.5 μm); 17, IMCC34767 (0.2 μm); 18, IMCC34768 (0.5 μm); 19, IMCC34782 (0.5 μm); 20, IMCC34783 (0.2 μm); 21, IMCC34782 (0.5 μm); 22, IMCC34785 (0.5 μm); 23, IMCC34786 (0.2 μm); 24, IMCC34787 (0.2 μm); 25, IMCC34788 (0.2 μm); 26, IMCC34789 (0.5 μm); 27, IMCC34790 (0.5 μm); 28, IMCC34769 (0.2 μm). Scale bars are indicated in parenthesis after strain ID.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.