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4,489 results for “transitivity”
Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
Repository - Sharp, localized phase transitions in single neuronal cells
<p>This repository is for the journal article "Sharp, localized phase transitions in single neuronal cells" (PNAS) and provides additional data as it contains single measurement files (plots) for cell measurements on which the presented data (mean values) is based.</p>
FIGURE 15. Pseudocleobis solitarius male. A–C. Right pedipalp. A. Telotarsus, retrodorsal view. B in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 15. Pseudocleobis solitarius male. A–C. Right pedipalp. A. Telotarsus, retrodorsal view. B. Detail of sensilla ampullacea. C. Tapered seta tip. D–F. Right leg I. D. Apex of telotarsus, apical seta in ligh blue. E. Detail of apical seta. F. Clubbed seta tip. G–I. Right telotarsus IV. G. Detail of pseudosegmentation. H. Terminal tarsomere and arolium. I. Detail of distal seta with comb-like structure. J. Sternites III and IV, filiform ctenidia in light blue. Scale bars: 600 nm (B), 900 nm (C), 2 μm (F), 6 μm (E, I), 60 μm (D, H), 90 μm (G), 200 μm (A, J).
FIGURE 12. Right male chelicera under SEM, prolateral view. A–C. P. huinca. D–F. P in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 12. Right male chelicera under SEM, prolateral view. A–C. P. huinca. D–F. P. profanus sp. nov. G–I. P. mauryi sp. nov. J–L. P. solitarius. A, D, G, J. Fixed finger, detail of flagellum prolateral surface in yellow circle in J. B, E, H, K. Plumose setae (pvd setae), yellow arrows indicate the setae of the second row at the profundal teeth level. C, F, I, L. Stridulatory plate. Scale bars: 10 μm (detail in J), 200 μm (E, G–H, J–L), 250 μm (F, I), 500 μm (A–D).
FIGURE 9. Male flagellum, prolateral view. A–B. P. huinca. C. P in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 9. Male flagellum, prolateral view. A–B. P. huinca. C. P. profanus sp. nov. D. P. bardensis. E. P. mauryi sp. nov. F. P. solitarius. Scale bars: 200 μm (A, C, E), 250 μm (D, F), 500 μm (B).
FIGURE 8 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 8. Male chelicera of P. mauryi sp. nov. (A, B) and P. solitarius (C, D) in retrolateral (A, C) and prolateral (B, D) views. E. P. solitarius, female chelicera in retrolateral view. DN: distal notch.
FIGURE 5 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 5. Known records of Pseudocleobis solitarius and females with P. solitarius genital sternite shape, but not linked with males.
FIGURE 4 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 4. Known records of Pseudocleobis huinca, P. bardensis, P. profanus sp. nov. and P. mauryi sp. nov..
FIGURE 7 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 7. Male chelicera of P. huinca (A–B), P. profanus sp. nov. (C–D) and P. bardensis (E–F) in retrolateral (A, C, E) and prolateral (B, D, F) views. (D', F') Movable finger mucron in retrodorsal view.
FIGURE 1 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 1. Habitat of some Pseudocleobis Pocock, 1900 species in Río Negro and Neuquén provinces. A. Monte between Pellegrini Lake and Cinco Saltos city (Río Negro province). B. Monte at the base of the mountains in Sierra Grande (Río Negro province). C. Payunia environment from Cuchillo Curá (Neuquén province). D. Monte from Paso Córdoba (Río Negro province).
FIGURE 6. Pseudocleobis general characters. A in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 6. Pseudocleobis general characters. A. female chelicera of P. huinca, retrolateral view. B. Male prosoma of P. huinca, dorsal view. C. Female pedipalp of P. huinca, prolateral view (only proventral spiniform setae shown). D. Right basitarsus II of P. solitarius, retrolateral view, proventral distal (PV-d) and subdistal (PV-sd) spiniform setae in orange, retroventral distal spiniform seta (RV-d) in yellow, retrolateral basal (RL-b) and subdistal (RL-sd) spiniform setae in light blue and retrodorsal distal (RD-d) spiniform seta in green. E. Right telotarsus II of P. solitarius, retrolateral view. F. Right telotarsus IV of P. huinca, proventral view.
FIGURE 13. Pseudocleobis huinca. A–C. Male. D–E. Female. A in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 13. Pseudocleobis huinca. A–C. Male. D–E. Female. A. Right pedipalp (tibia, basitarsus and telotarsus), retrolateral view, retroventral spiniform setae in light blue, proventral spiniform setae in yellow. B. Right telotarsus IV, retrolateral view, retroventral spiniform setae in light blue, proventral spiniform setae in yellow. C. Left pair of microsetae on genital sternite (sternite II). D. Left microseta on sternite V. E. Genital sternite, ventral view, position of microsetae in small yellow circle, detail of left pair of microsetae in large yellow circle. Scale bars: 4 μm (D), 6 μm (detail in E), 20 μm (C), 200 μm (E), 1 mm (B), 2 mm (A).
FIGURE 11. Right male chelicera under SEM, prolateral view. A. P. huinca. B. P in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 11. Right male chelicera under SEM, prolateral view. A. P. huinca. B. P. profanus sp. nov. C. P. mauryi sp. nov. D. P. solitarius. Scale bars: 1 mm.
FIGURE 2 in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 2. Live specimens of Pseudocleobis huinca (A–C) and Pseudocleobis solitarius (D–F), females (A, D) and males (B, C, E, F) in dorsal (A, B, D, E) and laterofrontal (C, F) views.
FIGURE 10. Female genital sternite. A. P. huinca, female allotype. B. P. bardensis, female allotype. C. P in The genus Pseudocleobis Pocock, 1900 (Solifugae: Ammotrechidae) in transitional Patagonia-Monte deserts, with descriptions of two new species
FIGURE 10. Female genital sternite. A. P. huinca, female allotype. B. P. bardensis, female allotype. C. P. profanus sp. nov., female from Cinco Saltos, diagonal arrows indicate the small plaques, straight arrows indicate the posterior sclerite. D–E. P. huinca, females from Paso Córdoba with abrasion signs. F. P. solitarius, female from Paso Córdoba. Scale bars: 200 μm (B), 500 μm (A, C–F).
Figure 5 in Neurovascular evidence for a co-occurrence of teeth and baleen in an Oligocene mysticete and the transition to filter-feeding in baleen whales
Figure 5. Digital segmentations (top) and graphical reconstructions of rostral canals in select cetaceans (bottom). A, extant toothed odontocete Tursiops truncatus (SDSNH 21212). B, extinct toothed mysticete Aetiocetus weltoni (UCMP 122900). C, extant toothless mysticete Eschrichtius robustus (modified from: Ekdale et al., 2015).
Figure 4 in Neurovascular evidence for a co-occurrence of teeth and baleen in an Oligocene mysticete and the transition to filter-feeding in baleen whales
Figure 4. CT-scan data of Aetiocetus weltoni (UCMP 122900). Slice A–A' taken oblique to the horizontal plane through the skull as indicated on the surface medial in lateral view to image course of infraorbital canal. Slices B–B', C–C' and D–D' taken along the transverse plane (original scan axis) at different positions along the rostrum as indicated on the surface model in dorsal view.
Figure 1 in Neurovascular evidence for a co-occurrence of teeth and baleen in an Oligocene mysticete and the transition to filter-feeding in baleen whales
Figure 1. Hypothesis of baleen evolution. Relationships based on published phylogenetic analyses (Uhen, 2013; Fordyce & Marx, 2018; Peredo et al., 2018). Thick bars represent stratigraphic ranges downloaded from the Paleobiology Database (paleobiodb.org) on 14 February 2020, using the taxonomic name search form for each terminal taxon named on the cladogram. Red branches indicate presence of lateral palatal foramina.
Figure 3 in Neurovascular evidence for a co-occurrence of teeth and baleen in an Oligocene mysticete and the transition to filter-feeding in baleen whales
Figure 3. Digital segmentation of neurovascular canals through rostrum of Aetiocetus weltoni (UCMP 122900). A, rostral canals in ventral view. B, rostral canals in lateral view. Abbreviations: dc, dental/alveolar canal; lpc, lateral palatal canal.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.