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1,411
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Dataset results
1,411 results for “Cell States”
Molecular states underlying neuronal cell type development and plasticity in the whisker cortex
GEO Series GSE276528. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Tumor-Initiating Stem Cells Fine-tune the Cell States of Neutrophils to Drive Cancer Relapse from Immunotherapy [Cut and Run]
GEO Series GSE278426. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin state changes in HOXA9/MEIS1 leukemia cells [ChIP-Seq]
GEO Series GSE103446. Mus musculus. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Oncohistone H3.3K27M-driven CREB5/ID1 Axis Mediates the Malignant Cell States of Diffuse Intrinsic Pontine Glioma (DIPG) [CUT&Tag]
GEO Series GSE250464. Homo sapiens. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cloning and Variation of Ground State Intestinal Stem Cells
GEO Series GSE57584. Homo sapiens. 24 samples. Type: Expression profiling by array.
Translation state array analysis of Mouse embryonic stem cells and embryoid bodies
GEO Series GSE9563. Mus musculus. 30 samples. Type: Expression profiling by array.
PITX2 dosage-dependent pacemaker cell state changes underlie sinus node dysfunction and atrial arrhythmia-susceptibility III
GEO Series GSE291752. Mus musculus. 27 samples. Type: Other.
Sox10 regulates stem/progenitor and mesenchymal cell states in mammary epithelial cells
GEO Series GSE71300. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
DESP: Demixing Cell State Profiles from Dynamic Bulk Molecular Measurements
Open the record for dataset details and reuse information.
Mapping spatial organization and genetic cell state regulators to target immune evasion in ovarian cancer
<p>This collection of data accompanies the study: <a href="https://www.nature.com/articles/s41590-024-01943-5">Yeh, Aguirre, Laveroni <em>et al.</em> <strong>Mapping spatial organization and genetic cell-state regulators to target immune evasion in ovarian cancer. </strong>(2024). </a><em><strong><a href="https://www.nature.com/articles/s41590-024-01943-5">Nature Immunology</a>.</strong></em> Files are provided in the form of RObjects (extension .rds) or tabulated data (extension .csv) to reproduce the results and figures provided in the paper via the the R programming environment using Code provided <a href="https://github.com/Jerby-Lab/HGSC_SpatialPerturbational">here</a>. </p> <p> </p> <p>Data collected and processed and published as a part of this study of tubo-ovarian high grade serous carcinoma (HGSC) includes: </p> <ul> <li>~<strong>2.5 million single cell spatial transcriptomics profiles</strong> from <strong>130 HGSC tumors</strong> of <strong>94 patients</strong></li> <li>Matching de-identified <strong>clinical annotations</strong> and clinical outcomes.</li> <li>Matching <strong>targeted genomic data</strong> from the bulk tumor tissues.</li> <li><strong>Perturb-seq CRISPR knockout</strong> data in ovarian cancer cells in monoculture and co-culture with Natural Killer (NK) cells.</li> </ul> <p>The spatial transcriptomics, Perturb-Seq, and matched H&E (Hematoxylin & Eosin, where available) are also provided via the Single Cell Portal with an <strong>interactive interface</strong> (<a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2640/hgsc-spatial-cohort-discovery-dataset">SCP2640</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2641/hgsc-spatial-cohort-validation-1-dataset">SCP2641</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2650/hgsc-spatial-cohort-validation-2-dataset">SCP2650</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2644/hgsc-spatial-cohort-test-1-dataset">SCP2644</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2646/hgsc-spatial-cohort-test-2-dataset">SCP2646</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2707/hgsc-spatial-study-perturb-seq">SCP2707</a>).</p> <p>The collection also includes previously published data that was analyzed and used in this study to examine the generalizability of the findings, evaluate immunotherapy predictors, and for data-driven experimental design.</p> <p>The SeuratObj.zip contains six SeuratObjects matching the five spatial transcriptomcs datasets (Discovery, Validation 1, Validation 2, Test 1 and Test 2) and Perturb-Seq data.</p> <p>The Yeh2024.zip file includes the study's data and additional datasets/results to reproduce the study's figures. A detailed description of the files included in the repository is provided in `README.txt` and `README.xlsx`</p>
Microglia from patients with multiple sclerosis display cell-autonomous immune activation state
<p>This repository contains the data and the code used in tanja hyvarinen's project (tanja.hyvarinen@tuni.fi)</p> <p>"analysis" contains the processing and analysis of the bulk RNA sequencing data, contains the analysis of the integration between our RNA seq and external datasets.<br>"fastq" contains the raw fastq sequences of the bulk RNA sequencing<br>"counts" contains the results of processing the fasta sequences with nfcore rnaseq workflow </p> <p>Analysis and integration folders can contain the starting raw data in "data", the R scripts in order of execution (op1, op2 ..) and the "output" folder that contains the final processed data of each operation.</p>
Molecular Architecture of Chitin and Chitosan-Dominated Cell Walls in Zygomycetous Fungal Pathogens by Solid-State NMR
Open the record for dataset details and reuse information.
Effect of Exercise Therapy on Psychological State and Clinical Prognosis of Advanced Non-small Cell Lung Cancer
ClinicalTrials.gov study NCT05959265. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Hematopoietic stem cells progressively deficient of glycogen synthase kinase initiate a pre-neoplastic state required for evolution to acute leukemia
GEO Series GSE53352. Mus musculus. 10 samples. Type: Expression profiling by array.
Chromatin remodeler CHD4 establishes chromatin states required for ovarian reserve formation, maintenance, and germ cell survival
GEO Series GSE273309. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide coherence between enhancer states and 3D chromosome conformation in mouse T cell differentiation
GEO Series GSE222211. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Arcuate nucleus of the hypothalamus cells are sensitive to nutritional state in a sex dependent manner.
GEO Series GSE282955. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Expression data from a reversible dasatinib-resistant state in long-term dasatinib-treated c-KIT-mutated Kasumi-1 cell line
GEO Series GSE39073. Homo sapiens. 9 samples. Type: Expression profiling by array.
Effect of different Trp53 allelic states on the response to etoposide treatment in ER-Hoxb8 cells
GEO Series GSE299918. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing.
YTHDF2 Suppresses the 2C-like State in Mouse Embryonic Stem Cells
GEO Series GSE270884. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.