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Physiological parameters for four fish species (rainbow trout, zebra fish, fathead minnow and three-spined stickleback) as the basis for the development of generic physiologically-based kinetic models
<p>This excel file (DOI: 10.5281/zenodo.1414332) provides physiological parameters and their inter-individual variability (mean, coefficient of variation, sample size) for four fish species: rainbow trout (<em>Onchorhynchus mykiss</em>), zebrafish (<em>Danio rerio</em>), fathead minnow (<em>Pimephales promelas</em>), and three-spined stickleback (<em>Gasterosteus aculeatus</em>). These physiological parameters were estimated based on the results of extensive literature searches and specific experimental data described in Grech et al., (2018). </p> <p>This file is associated with R codes (DOI: 10.5281/zenodo.1414332) for generic PB-K models, partition coefficient Quantitative Structure Activity Relationship (QSAR) models for each fish species and parameterisation of model for males and females of each species separately.</p> <p>The full data collection and implementation of the models using case studies are described in Grech et al., 2018 (<a href="https://doi.org/10.1016/j.scitotenv.2018.09.163">https://doi.org/10.1016/j.scitotenv.2018.09.163</a>)</p>
Figure 4 in First record of subfamily diapriinae (diaprioidea: diapriidae) from Odisha, with generic level distribution in rice ecosystems
Figure 4. Relative abundance of genera in subfamily Diapriinae.
Figure 1 in First record of subfamily diapriinae (diaprioidea: diapriidae) from Odisha, with generic level distribution in rice ecosystems
Figure 1. The distribution of subfamily Diapriinae across the rice fields of Odisha.
Figure 3 in First record of subfamily diapriinae (diaprioidea: diapriidae) from Odisha, with generic level distribution in rice ecosystems
Figure 3. Relative abundance of diapriids in rice fields of Odisha.
test files: Reliable ID test generic occurrence metadata change
For testing of harvesting code<p></p>8d25162dfb1c8007bb527bb8b83c8d86 generic metadata, Date identified, changed
FIGURE 1 in The first fossil New World Dixidae with a critical discussion of generic definitions
FIGURE 1. Habitus of Dixa intacta, holotype. Scale bar equals 3 mm.
FIGURE 6 in The first fossil New World Dixidae with a critical discussion of generic definitions
FIGURE 6. Habitus of Dixella eomarginata, holotype. Scale bar equals 3 mm.
FIGURE 8 in The first fossil New World Dixidae with a critical discussion of generic definitions
FIGURE 8. Habitus of Dixella curvistyla, holotype. Scale bar equals 3 mm.
FIGURE 10 in The first fossil New World Dixidae with a critical discussion of generic definitions
FIGURE 10. Habitus of Dixella spinilobata, holotype. Scale bar equals 3 mm.
Figure 4 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis
Figure 4. The type locality of Petalocladius dominiensis Andersen & Baranov sp. n.
Figure 2 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis
Figure 2. Petalocladius dominiensis Andersen & Baranov sp. n., male. Wing.
Table 3 in One in, one out: Generic circumscription within subtribe Manilkarinae (Sapotaceae)
<p><b>Table 3.</b> Divergence time estimations.</p><table><tbody><tr><th>Node</th><th>Mean age BEAST (mya)</th><th>95% HPD BEAST (mya)</th></tr></tbody><tbody><tr><th>Crown of Manilkarinae subtribe</th><td>37.65</td><td>33.13–42.37</td></tr><tr><th><i>Labramia</i> A.DC. – <i>Manilkara</i> Adans. s.str. divergence</th><td>33.86</td><td>30.34–37.97</td></tr><tr><th><i>Labourdonnaisia</i> Bojer – <i>Abebaia</i> Baehni divergence</th><td>30.33</td><td>24.24–36.42</td></tr><tr><th>Crown of <i>Labramia</i></th><td>10.72</td><td>8.6–12.83</td></tr><tr><th>Crown of <i>Manilkara</i> s.str.</th><td>29.38</td><td>28.08–31.57</td></tr><tr><th>Crown of <i>Labourdonnaisia</i></th><td>17.29</td><td>13.85–20.75</td></tr><tr><th>Crown of <i>Abebaia</i> clade</th><td>13.96</td><td>8.54–19.91</td></tr><tr><th>Crown of <i>Labramia mayottensis</i> Labat & al.</th><td>4.63</td><td>2.82–6.6</td></tr><tr><th>Crown of Mascarene <i>Labourdonnaisia</i></th><td>6.00</td><td>3.38–8.98</td></tr></tbody></table><p>mya: million years ago; HPD: highest posterior density.</p>
Table 2 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Table 2.</b> List of species represented in the tree, arranged according to the clades to which they belong. The species within in each clade are listed alphabetically.</p><table><tbody><tr><th>Clade</th><th>Species</th></tr></tbody><tbody><tr><th>1</th><td><i>Didymocheton aliquantulus</i></td></tr><tr><th>(<i>Didymocheton</i>)</th><td><i>Didymocheton alliaceus</i></td></tr><tr><th></th><td><i>Didymocheton aneityensis</i></td></tr><tr><th></th><td><i>Didymocheton annae</i></td></tr><tr><th></th><td><i>Didymocheton bijugus</i></td></tr><tr><th></th><td><i>Didymocheton canalensis</i></td></tr><tr><th></th><td><i>Didymocheton fraserianus</i></td></tr><tr><th></th><td><i>Didymocheton gaudichaudianus</i></td></tr><tr><th></th><td><i>Didymocheton hornei</i> var. <i>glabratus</i></td></tr><tr><th></th><td><i>Didymocheton hornei</i> var. <i>hornei</i></td></tr><tr><th></th><td><i>Didymocheton huntii</i></td></tr><tr><th></th><td><i>Didymocheton lenticellaris</i></td></tr><tr><th></th><td><i>Didymocheton macranthus</i></td></tr><tr><th></th><td><i>Didymocheton maota</i></td></tr><tr><th></th><td><i>Didymocheton minutiflorus</i></td></tr><tr><th></th><td><i>Didymocheton mollis</i></td></tr><tr><th></th><td><i>Didymocheton mollissimus</i></td></tr><tr><th></th><td><i>Didymocheton multijugus</i></td></tr><tr><th></th><td><i>Didymocheton myriandrus</i></td></tr><tr><th></th><td><i>Didymocheton nutans</i></td></tr><tr><th></th><td><i>Didymocheton pachyphyllus</i></td></tr><tr><th></th><td><i>Didymocheton pachypodus</i></td></tr><tr><th></th><td><i>Didymocheton papuanus</i></td></tr><tr><th></th><td><i>Didymocheton pettigrewianus</i></td></tr><tr><th></th><td><i>Didymocheton quercifolius</i></td></tr><tr><th></th><td><i>Didymocheton roseus</i></td></tr><tr><th></th><td><i>Didymocheton samoensis</i></td></tr><tr><th></th><td><i>Didymocheton setosus</i></td></tr><tr><th></th><td><i>Didymocheton sparsiflorus</i></td></tr><tr><th></th><td><i>Didymocheton spectabilis</i></td></tr><tr><th></th><td><i>Didymocheton tenuiflorus</i></td></tr><tr><th></th><td><i>Didymocheton tongensis</i></td></tr><tr><th></th><td><i>Didymocheton variabilis</i></td></tr><tr><th>2</th><td><i>Cabralea canjerana</i></td></tr><tr><th>(<i>Cabralea</i>)</th><td><i>Cabralea canjerana</i> subsp. <i>canjerana</i></td></tr><tr><th></th><td><i>Cabralea canjerana</i> subsp. <i>polytricha</i></td></tr><tr><th>3</th><td><i>Aglaia agglomerata</i></td></tr><tr><th>(Aglaieae sensu</th><td><i>Aglaia argentea</i></td></tr><tr><th>Pennington &</th><td><i>Aglaia cucullata</i></td></tr><tr><th>Styles, 1975)</th><td><i>Aglaia leptantha</i></td></tr><tr><th></th><td><i>Aglaia membranifolia</i></td></tr><tr><th></th><td><i>Aglaia nyaruensis</i></td></tr><tr><th></th><td><i>Aglaia odorata</i></td></tr><tr><th></th><td><i>Aglaia teysmanniana</i></td></tr><tr><th></th><td><i>Aphanamixis borneensis</i></td></tr><tr><th></th><td><i>Aphanamixis polystachya</i></td></tr><tr><th></th><td><i>Aphanamixis sumatrana</i></td></tr><tr><th></th><td><i>Lansium domesticum</i></td></tr><tr><th></th><td><i>Lansium membranaceum</i></td></tr><tr><th></th><td><i>Reinwardtiodendron celebicum</i></td></tr><tr><th></th><td><i>Reinwardtiodendron humile</i></td></tr><tr><th></th><td><i>Reinwardtiodendron kinabaluense</i></td></tr><tr><th></th><td><i>Sphaerosacme decandra</i></td></tr><tr><th>4</th><td><i>Epicharis brevipanicula</i></td></tr><tr><th>(<i>Epicharis</i>)</th><td>Epicharis cumingiana</td></tr><tr><th></th><td>Epicharis cuneata</td></tr><tr><th></th><td>Epicharis densiflora</td></tr><tr><th></th><td><i>Epicharis gillespieana</i></td></tr></tbody></table>
Table 1 in One in, one out: Generic circumscription within subtribe Manilkarinae (Sapotaceae)
<p><b>Table 1.</b> Ingroup genera with distribution and described species included in this study.</p><table><tbody><tr><th>Genus, with number of accepted species</th><th>Distribution</th><th>Species included in this study</th></tr></tbody><tbody><tr><th><i>Faucherea</i> Lecomte 11 species</th><td>Madagascar</td><td><i>Faucherea ambrensis</i> Aubrév.</td></tr><tr><td><i>Faucherea glutinosa</i> Aubrév.</td></tr><tr><td><b><i>Faucherea hexandra</i> (Lecomte) Lecomte</b></td></tr><tr><td><i>Faucherea laciniata</i> Lecomte</td></tr><tr><td><i>Faucherea manongarivensis</i> Aubrév.</td></tr><tr><td><i>Faucherea parvifolia</i> Lecomte</td></tr><tr><td><i>Faucherea tampoloensis</i> Aubrév.</td></tr><tr><td><i>Faucherea thouvenotii</i> Lecomte</td></tr><tr><td><i>Faucherea urschii</i> Capuron ex Aubrév.</td></tr><tr><th><i>Labourdonnaisia</i> Bojer 6 species</th><td>Mascarenes Islands and Madagascar</td><td><b><i>Labourdonnaisia calophylloides</i> Bojer</b></td></tr><tr><td><i>Labourdonnaisia glauca</i> Bojer</td></tr><tr><td><i>Labourdonnaisia lecomtei</i> Aubrév.</td></tr><tr><td><i>Labourdonnaisia madagascariensis</i> Pierre ex Baill.</td></tr><tr><td><i>Labourdonnaisia revoluta</i> Bojer</td></tr><tr><th><i>Labramia</i> A.DC. 10 species</th><td>Madagascar and Comoros</td><td><i>Labramia ankaranaensis</i> Aubrév.</td></tr><tr><td><i>Labramia ankaranaensis</i> var. <i>antsingensis</i> Aubrév.</td></tr><tr><td><i>Labramia boivinii</i> (Pierre) Aubrév.</td></tr><tr><td><b><i>Labramia bojeri</i> A.DC.</b></td></tr><tr><td><i>Labramia capuronii</i> Aubrév.</td></tr><tr><td><i>Labramia costata</i> (M.M.Hartog ex Baill.) Aubrév.</td></tr><tr><td><i>Labramia louvelii</i> Aubrév.</td></tr><tr><td><i>Labramia mayottensis</i> Labat, Pignal & O.Pascal</td></tr><tr><td><i>Labramia platanoides</i> Capuron ex Aubrév.</td></tr><tr><td><i>Labramia sambiranensis</i> Aubrév.</td></tr><tr><th><i>Manilkara</i> Adans. s.str. 78 species</th><td>Pantropical (Africa, America, Asia, Pacific Asia)</td><td><i>Manilkara bidentata</i> (A.DC.) A.Chev.</td></tr><tr><td><i>Manilkara boivinii</i> Aubrév.</td></tr><tr><td><i>Manilkara cuneifolia</i> (Baker) Dubard</td></tr><tr><td><i>Manilkara dissecta</i> (L.f.) Dubard</td></tr><tr><td><i>Manilkara fasciculata</i> (Warb.) H.J.Lam & Maas Geest</td></tr><tr><td><b>(type species of the genus <i>Abebaia</i>)</b></td></tr><tr><td><i>Manilkara hexandra</i> (Roxb.) Kuntze</td></tr><tr><td><i>Manilkara lacera</i> (Baker) Dubard</td></tr><tr><td><i>Manilkara longifolia</i> (A.DC.) Dubard</td></tr><tr><td><i>Manilkara multinervis</i> (Baker) Dubard</td></tr><tr><td><i>Manilkara obovata</i> (Sabine & G.Don) J.H.Hemsl.</td></tr><tr><td><i>Manilkara sansibarensis</i> (Engl.) Dubard</td></tr><tr><td><i>Manilkara udoido</i> Kaneh.</td></tr><tr><td><i>Manilkara zapota</i> (L.) P.Royen</td></tr></tbody></table>
Appendix 3 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Appendix 3.</b> Key morphological “spot” characters for the former <i>Dysoxylum</i> s.l. as well as the newly resurrected genera.</p><table><tbody><tr><th>Genus</th><th>Morphological characters</th></tr></tbody><tbody><tr><th><i>Dysoxylum</i> s.l.</th><td>Leaves pinnate; pseudogemmula 0</td></tr><tr><th></th><td>Flowers unisexual; calyx tubular or sepals discrete; petals free or adnate to staminal tube; staminal tube cylindrical to urceolate</td></tr><tr><th></th><td>Seeds anatropous</td></tr><tr><th><i>Dysoxylum</i> s.str.</th><td>Apical leaf-buds stiletto-like Inflorescence spiciform</td></tr><tr><th><i>Didymocheton</i></th><td>Petals adnate to staminal tube</td></tr><tr><th><i>Epicharis</i></th><td>Inflorescence racemose. ramiflorous/cauliflorous Calyx closed, later splitting into irregular lobes and basally circumscissile</td></tr><tr><th><i>Goniocheton</i></th><td>Leaves imparipinnate Fruits white to pink Seeds aril-less, pachychalazal</td></tr><tr><th><i>Prasoxylon</i></th><td>Seeds unitegmic Leaves and seeds with strong odour</td></tr><tr><th><i>Pseudocarapa</i></th><td>Leaves paripinnate Staminal tube cylindrical with appendages Disk annular or patelliform Pollen sheds in tetrads</td></tr></tbody></table>
Appendix 2 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Appendix 2.</b> Nucleotide substitution models used in the BI analyses for each marker in the alignment without and with applying Gblocks (Castresana, 2000).</p><table><tbody><tr><th></th><th>Nucleotide substitution model for alignment without Gblocks</th><th>Nucleotide substitution model for alignment using Gblocks</th></tr></tbody><tbody><tr><th>ITS</th><td>GTR+I+Γ (Tavaré, 1986)</td><td>GTR+I+Γ (Tavaré, 1986)</td></tr><tr><th>ETS</th><td>TVM+Γ (Posada, 2003)</td><td>TVM+Γ (Posada, 2003)</td></tr><tr><th><i>trnL-F</i></th><td>TVM+Γ (Posada, 2003)</td><td>HKY (Hasegawa & al., 1985)</td></tr><tr><th><i>rps15-ycf1</i> HKY+Γ (Hasegawa & al., 1985)</th><td>—*</td></tr></tbody></table>
Fig. 5 in Copelatus sibelaemontis sp. nov. (Coleoptera: Dytiscidae) from the Moluccas with generic assignment based on morphology and DNA sequence data
Fig. 5. Distribution of Copelatus sibelaemontis sp. nov.
Figures 1–2. Diolcus thomasi, habitus. 1 in A new species of Diolcus Mayr (Hemiptera: Heteroptera: Scutelleridae: Pachycorinae) with a reexamination of the subfamily and generic placement of Nesogenes boscii (Fabricius) (Hemiptera: Heteroptera: Scutelleridae: Elvisurinae or Pachycorinae)
Figures 1–2. Diolcus thomasi, habitus. 1) Dorsal view. 2) Ventral view. Scale line = 1.0 mm.
Figures 5–6. Nesogenes boscii, habitus. 5 in A new species of Diolcus Mayr (Hemiptera: Heteroptera: Scutelleridae: Pachycorinae) with a reexamination of the subfamily and generic placement of Nesogenes boscii (Fabricius) (Hemiptera: Heteroptera: Scutelleridae: Elvisurinae or Pachycorinae)
Figures 5–6. Nesogenes boscii, habitus. 5) Dorsal view. 6) Ventral view. Scale line = 1.0 mm.
Figures 3–4. Diolcus chrysorrhoeus, habitus. 3 in A new species of Diolcus Mayr (Hemiptera: Heteroptera: Scutelleridae: Pachycorinae) with a reexamination of the subfamily and generic placement of Nesogenes boscii (Fabricius) (Hemiptera: Heteroptera: Scutelleridae: Elvisurinae or Pachycorinae)
Figures 3–4. Diolcus chrysorrhoeus, habitus. 3) Dorsal view. 4) Ventral view. Scale line = 1.0 mm.
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