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2,185 results for “integrated taxonomy”

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FIGURE 1 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 1. Map showing both the localities of populations examined in morphology part and the possible distribution range for each taxa. Only the Turkish areas of the taxa are depicted. Numbers refer to population codes (Map ID) given in Appendix 1. Colors are lineage-specific which were identified in phylo-trees (see Figure 9).

opennotspecifiedDec 2022View details →
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FIGURE 3 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 3. The three-dimensional representation of MALE centroids (bidimensional of samples and centroids in Fig 2) shows the MST (Minimum Spanning Tree) superimposed on the three-dimensional representation of the position of the centroids. The three axes together explain 89.1 % of all the variability. This MST can be considered equivalent to an unrooted NJ and connects each centroid with its closest relative. See text for explanation.

opennotspecifiedDec 2022View details →
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FIGURE 6 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 6. The three-dimensional representation of FEMALE centroids (bidimensional of samples and centroids in Fig 5) shows the MST (Minimum Spanning Tree) superimposed on the three-dimensional representation of the position of the centroids. The three axes together explain 88.4 % of all the variability. This MST can be considered equivalent to an unrooted NJ and connects each centroid with its closest relative. See text for explanation.

opennotspecifiedDec 2022View details →
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FIGURE 8. A in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 8. A graphic display of the degree (number) of significant differences (p <0.01) among the different OTUs (MALES and FEMALES together). As can be seen, the overall representation is similar to the "old" (only morphological) taxonomy. See text for details.

opennotspecifiedDec 2022View details →
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FIGURE 5 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 5. Canonical Discriminant Analysis (CDA) plot for FEMALES. Specimens, sample centroids, and group perimeters are represented. Green circle: D. v. spitzenbergerae; Clear blue triangle: "Clade A" from Candan et al. 2021; Inverted violet triangle "Clade B" from Candan et al. 2021; Cross: D. v. valentini; Blade: D. v. lantzicyreni; Asterisk: D. b. bithynica; Diamond: D. b. tristis; Minute dot: D. r. rudis; Side inclined clear gray triangle: D. r. bischoffi; Side inclined dark gray triangle: D. r. obscura; Clear gray square: D. r. macromaculata; Gray circle: D. r. mirabilis; Yellow triangle: D. r. bolkardaghica. These two first axes explain together 79.8 % of the total variability.

opennotspecifiedDec 2022View details →
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FIGURE 7 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 7. UPGMA tree derived from the matrix of distances (Table 1) among FEMALE samples, as in the males one, shows three groups: a basal one, well different, with D. bithynica (inc. ssp. tristis), and two more closer groups that include the former rudis and valentini-complexes. See the text for an explanation of the results. The tree, derived from the calculation of ultrametric distances calculated in UPGMA, reflects very well the relationships in respect to the original distanced matrix (see Table 1). Its Cophenetic Correlation Index, r = 0.94, shows that the obtained dendrogram has a very good fit (r> 0.9; Rohlf 2000).

opennotspecifiedDec 2022View details →
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FIGURE 2 in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 2. Canonical Discriminant Analysis (CDA) plot for MALES. Specimens, sample centroids, and group perimeters are represented. Green circle: D. v. spitzenbergerae; Clear blue triangle: "Clade A" from Candan et al. 2021; Inverted violet triangle: "Clade B" from Candan et al. 2021; Cross: D. v. valentini; Blade: D. v. lantzicyreni; Asterisk: D. b. bithynica; Diamond: D. b. tristis; Minute dot: D. r. rudis; Side inclined clear gray triangle: D. r. bischoffi; Side inclined dark gray triangle: D. r. obscura; Clear gray square: D. r. macromaculata; Gray circle: D. r. mirabilis; Yellow triangle: D. r. bolkardaghica. These two first axes explain together 80.3 % of the total variability.

opennotspecifiedDec 2022View details →
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FIGURE 12. a in Revising the taxonomy of Darevskia valentini (Boettger, 1892) and Darevskia rudis (Bedriaga, 1886) (Squamata, Lacertidae): a Morpho-Phylogenetic integrated study in a complex Anatolian scenario

FIGURE 12. a) Darevskia spitzenbergerae wernermayeri ssp. nov. (Paratype; nº 12, Male; Başeğmez Village, Çaldıran, Turkey); b) Darevskia mirabilis stat. nov. (Paratype; nº 5, Female; Ovit Pass, Kaçkar Mountains, Rize, Turkey); c) Darevskia rudis bolkardaghica (Paratype; nº 1, Male; Karagöl, Ulukışla, Niğde, Central Anatolia, Turkey); d) Darevskia rudis lantzicyreni comb. nov. (nº 23, male; Kümbet Village, Zara, Turkey); e) Darevskia josefschmidtleri sp. nov. (Paratype; nº 20, Male; Yukarınarlıca Village, Çatak, Van, Turkey); f) Darevskia valentini (nº 9, Male; Tepeler Village, Ardahan, Turkey) and temporal area of an Armenian specimen (Karvansaray, Martuni District, Armenia); g) Darevskia spitzenbergerae spitzenbergerae stat. et comb. nov. (nº 1, Male; Cilo Sat Mountains, Hakkari, Turkey)- Also, temporal area of other specimen from the same locality. The new nomenclature proposed in the text is used.

opennotspecifiedDec 2022View details →
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FIGURE 3 in Integrative taxonomy of Imparfinis (Siluriformes, Heptapteridae) from the Upper Paraná River basin, Brazil, with description of a new species

FIGURE 3. Left column: Imparfinis lepturus, holotype, MZUSP 127602, 45.3 mm SL, from Rio Corrente, Upper Paraná basin, Aporé, Goiás. Right column: Imparfinis lepturus, paratypes, LBP 32018, from top to bottom: 51.8 mm SL; 44.2 mm SL; 33.3 mm SL.

opennotspecifiedMar 2023View details →
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FIGURE 6 in Integrative taxonomy of Imparfinis (Siluriformes, Heptapteridae) from the Upper Paraná River basin, Brazil, with description of a new species

FIGURE 6. Live specimens of a) Imparfinis lepturus, LBP 32018; b) Imparfinis sp.n. LBP32067; c) Imparfinis mirini, LBP32005. Photo: J. Crispim.

opennotspecifiedMar 2023View details →
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FIGURE 4 in Integrative taxonomy of Imparfinis (Siluriformes, Heptapteridae) from the Upper Paraná River basin, Brazil, with description of a new species

FIGURE 4. Type locality of Imparfinis lepturus, Rio Corrente, Goiás state, Brazil. Photo: J. Crispim.

opennotspecifiedMar 2023View details →
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FIGURE 5 in Integrative taxonomy of Imparfinis (Siluriformes, Heptapteridae) from the Upper Paraná River basin, Brazil, with description of a new species

FIGURE 5. Imparfinis schubarti: a-Mogi-Guaçu River; b-Tietê River; c-Paranaíba River; d-illustration from original description of I. schubarti Gomes 1956. Imparfinis mirini: e-Paranapanema River; f-Tietê River; g-Sucuriú River; H-holotype of I. mirini (FMNH 54335). Imparfinis piperatus: i-Paraíba do Sul River; j-Upper Tietê River; l-Ribeira do Iguape River; m-holotype of I. piperatus (CAS 63636).

opennotspecifiedMar 2023View details →
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FIGURE 1 in Integrative taxonomy of Imparfinis (Siluriformes, Heptapteridae) from the Upper Paraná River basin, Brazil, with description of a new species

FIGURE 1. Map of samples sites (a) and maximum likelihood three of COI data (b). Black bars represent the molecular criteria used to species delimitation. Black nodes indicate>90% bootstrap values from 1.000 pseudoreplicates; grey nodes indicate support between 70% and 90% bootstrap values. Colored symbols in the map and in the tree represent the species (Imparfinis lepturus—pink star; I. minutus—yellow diamond; Imparfinis mirini—blue circle; I. piperatus—light blue triangle; Imparfinis n.sp.—black hexagon and I. schubarti—red square). Topotype samples represented by asterisc. GR (Grande); IV (Ivinhema); PS (Paraíba do Sul); PN (Paranaíba); P (Paranapanema); RI (Ribeira do Iguape); SU (Sucuriú); T (Tietê); UT (Upper Tietê); V (Velhas).

opennotspecifiedMar 2023View details →
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Figure 7 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 7. Three-dimensional reconstruction of the lateroventral region of the skull in Amerotyphlops species based on HRXCT data. A, Amerotyphlops caetanoi sp. nov. (MZUSP S-023380); B, Amerotyphlops brongersmianus (MZUSP 14674). Insert shows a lateral profile of the skull of A. brongersmianus presenting in red the position of the detailed region. Scales bars equal to 5 mm. Abbreviations: mx, maxilla; palmx, palatine maxillary process; palptv, palatine pterygoid ventral process; pt, pterygoid.

opennotspecifiedNov 2022View details →
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Figure 5 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 5. Three-dimensional cutaway views along the sagittal axis of the nasal cavity in Amerotyphlops species based on HRXCT data. A, Amerotyphlops brongersmianus (MZUSP 14689); B, Amerotyphlops caetanoi sp. nov. (MZUSP S-023380). Insert show a lateral profile of the skull of A. brongersmianus presenting in red the position of the detailed region. Scales bars equal to 5 mm. Abbreviations: pmx, premaxilla; smx, septomaxilla; vm, vomer; na, nasal.

opennotspecifiedNov 2022View details →
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Figure 6 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 6. Three-dimensional reconstruction of the lateral region of the skull in Amerotyphlops species based on HRXCT data. A, Amerotyphlops caetanoi sp. nov. (MZUSP S-023380); B, Amerotyphlops montanum sp. nov. (MZUSP 20065); C, Amerotyphlops brongersmianus (MZUSP 14674). Insert shows a lateral profile of the skull of A. brongersmianus presenting in red the position of the detailed region. Scales bars equal to 5 mm. Abbreviations: mx, maxilla; mxpalf, palatine articulation fossa of the maxilla.

opennotspecifiedNov 2022View details →
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Figure 13 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 13. Hemipenis of Amerotyphlops martis sp. nov. (MNRJ 18744), detail of the apical region on the sulcate (A) and asulcate views (B), sulcate (C) and asulcate sides (D). Scale bar equal to 1 mm.

opennotspecifiedNov 2022View details →
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Figure 3 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 3. Results of partial least square discriminant analysis (PLS-DA) and linear discriminant analysis (LDA). A, PLS-DA of the simulated dataset based on seven discrete (pholidosis) and 14 rates characters for five OTUs (Group 1). B, PLS-DA of the simulated dataset based on seven discrete (pholidosis) and 14 rates characters for four OTUs (Group 2). C, LDA of the simulated dataset based on 15 continuous (linear morphometrics) characters for five OTUs (Group 1). D, LDA of the simulated dataset based on 15 continuous (linear morphometrics) characters for four OTUs (Group 2). Species are colour-coded according to OTUs (see Key-colour OTUs, on the bottom).

opennotspecifiedNov 2022View details →
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Figure 2 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 2. Results of principal component analysis (PCA) using the raw dataset based on 36 characters for nine OTUs. A, PCA of females. B, PCA of males. Species are colour-coded according to OTUs (see Key-colour OTUs, on the bottom).

opennotspecifiedNov 2022View details →
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Figure 8 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy

Figure 8. Three-dimensional reconstruction of the posterior region of the left mandible in Amerotyphlops species based on HRXCT data. A, Amerotyphlops caetanoi sp. nov. (MZUSP S-023380); B, Amerotyphlops brongersmianus (MZUSP 14674). Insert shows a lateral profile of the skull of A. brongersmianus presenting in red the position of the detailed region. Scales bars equal to 5 mm. Abbreviations: cb, compound bone; q, quadrate; rp, retroarticular process.

opennotspecifiedNov 2022View details →

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Allen Brain Atlas

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DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

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International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

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OpenNeuro

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openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record